CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118054 189792 38.35 307846 2 111940 210102 34.76 322042 3 112182 196725 36.32 308907 4 119146 175066 40.50 294212 5 116601 154957 42.94 271558 6 114764 132460 46.42 247224 7 126055 132358 48.78 258413 8 65402 148824 30.53 214226 9 58413 140504 29.37 198917 10 59027 139235 29.77 198262 11 61988 144135 30.07 206123 12 60275 142920 29.66 203195 13 59502 146252 28.92 205754 14 57651 147221 28.14 204872 15 55497 147887 27.29 203384 16 52283 146851 26.26 199134 17 50631 145494 25.82 196125 18 51649 148551 25.80 200200 19 50098 148564 25.22 198662 20 51162 149898 25.45 201060 21 50576 151715 25.00 202291 22 49344 150988 24.63 200332 23 49030 149600 24.68 198630 24 48755 149890 24.54 198645 25 48076 149236 24.37 197312 26 48141 147480 24.61 195621 27 48106 150654 24.20 198760 28 48799 151099 24.41 199898 29 47944 150479 24.16 198423 30 47323 152695 23.66 200018 31 48070 150150 24.25 198220 32 47665 147608 24.41 195273 33 47828 150124 24.16 197952 34 48911 150279 24.55 199190 35 48045 149327 24.34 197372 36 47338 151642 23.79 198980 37 46552 148814 23.83 195366 38 46179 148860 23.68 195039 39 46897 150010 23.82 196907 40 46581 148121 23.92 194702 41 46953 147561 24.14 194514 42 47623 150092 24.09 197715 43 47048 149075 23.99 196123 44 46434 147922 23.89 194356 45 47486 148575 24.22 196061 46 47284 149609 24.02 196893 47 46471 147244 23.99 193715 48 46146 148150 23.75 194296 49 48206 147793 24.60 195999 50 46885 149493 23.87 196378 51 46744 148146 23.98 194890 52 47362 151319 23.84 198681 53 47221 146892 24.33 194113 54 46147 146457 23.96 192604 55 45556 144915 23.92 190471 56 45993 144211 24.18 190204 57 46478 145057 24.27 191535 58 46934 146170 24.31 193104 59 46883 144249 24.53 191132 60 46387 145132 24.22 191519 61 46813 143613 24.58 190426 62 46109 143948 24.26 190057 63 45497 143747 24.04 189244 64 45073 143140 23.95 188213 65 45683 141235 24.44 186918 66 46008 142022 24.47 188030 67 45563 139324 24.64 184887 68 45018 139617 24.38 184635 69 44624 138072 24.43 182696 70 44479 138054 24.37 182533 71 43510 134742 24.41 178252 72 43152 136134 24.07 179286 73 42840 134651 24.14 177491 74 42868 134455 24.18 177323 75 41729 132985 23.88 174714 76 41356 133475 23.65 174831 77 41619 131245 24.08 172864 78 41912 131489 24.17 173401 79 41113 129394 24.11 170507 80 40140 129512 23.66 169652 81 39967 128273 23.76 168240 82 39077 127402 23.47 166479 83 39513 127377 23.68 166890 84 39707 126474 23.89 166181 85 38931 123818 23.92 162749 86 37928 122971 23.57 160899 87 37237 122082 23.37 159319 88 37097 121876 23.34 158973 89 36612 119567 23.44 156179 90 36809 119514 23.55 156323 91 36384 117655 23.62 154039 92 35831 116458 23.53 152289 93 35531 117136 23.27 152667 94 34916 116149 23.11 151065 95 34797 115082 23.22 149879 96 34430 113757 23.23 148187 97 34012 110590 23.52 144602 98 31324 103375 23.25 134699 99 25056 82918 23.21 107974 100 32138 103974 23.61 136112 101 29971 103770 22.41 133741 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 150640 304282 33.11 454922 2 88153 292427 23.16 380580 3 43668 280316 13.48 323984 4 25741 282680 8.35 308421 5 17042 255643 6.25 272685 6 14473 248323 5.51 262796 7 10963 297178 3.56 308141 8 6060 315727 1.88 321787 9 4865 302992 1.58 307857 10 5043 296738 1.67 301781 11 5462 298970 1.79 304432 12 5096 303050 1.65 308146 13 4942 294573 1.65 299515 14 4556 294074 1.53 298630 15 4808 301012 1.57 305820 16 4082 301123 1.34 305205 17 5021 295983 1.67 301004 18 4370 297691 1.45 302061 19 3789 295669 1.27 299458 20 4215 309538 1.34 313753 21 3899 313313 1.23 317212 22 3999 308104 1.28 312103 23 4277 313132 1.35 317409 24 4069 317792 1.26 321861 25 3785 307936 1.21 311721 26 5087 310547 1.61 315634 27 3846 316132 1.20 319978 28 3750 314096 1.18 317846 29 4619 317654 1.43 322273 30 3624 318618 1.12 322242 31 3615 311700 1.15 315315 32 3642 317554 1.13 321196 33 3759 318709 1.17 322468 34 3827 311465 1.21 315292 35 4638 314055 1.46 318693 36 3817 318466 1.18 322283 37 3875 308056 1.24 311931 38 4428 312715 1.40 317143 39 3687 313769 1.16 317456 40 3813 312623 1.20 316436 41 3759 311508 1.19 315267 42 3620 315022 1.14 318642 43 3547 308821 1.14 312368 44 3705 312466 1.17 316171 45 3759 311995 1.19 315754 46 3742 310227 1.19 313969 47 3980 310999 1.26 314979 48 3639 317267 1.13 320906 49 3840 308037 1.23 311877 50 4031 308056 1.29 312087 51 3722 312061 1.18 315783 52 3819 312272 1.21 316091 53 3913 307252 1.26 311165 54 4062 315150 1.27 319212 55 4050 308410 1.30 312460 56 4052 311670 1.28 315722 57 3979 311208 1.26 315187 58 4147 306677 1.33 310824 59 4329 310649 1.37 314978 60 4145 312848 1.31 316993 61 4183 305429 1.35 309612 62 4528 307129 1.45 311657 63 4445 306120 1.43 310565 64 4460 302932 1.45 307392 65 5277 301528 1.72 306805 66 4385 299231 1.44 303616 67 4494 291894 1.52 296388 68 5192 294980 1.73 300172 69 4318 293925 1.45 298243 70 4185 287788 1.43 291973 71 4327 287711 1.48 292038 72 4293 288289 1.47 292582 73 4302 285384 1.49 289686 74 4850 282923 1.69 287773 75 4194 282702 1.46 286896 76 4160 276577 1.48 280737 77 4992 275828 1.78 280820 78 4152 273618 1.49 277770 79 4168 267095 1.54 271263 80 4177 268546 1.53 272723 81 4126 265879 1.53 270005 82 4078 260113 1.54 264191 83 4347 263562 1.62 267909 84 4324 264399 1.61 268723 85 4354 258519 1.66 262873 86 4293 257580 1.64 261873 87 4210 259738 1.60 263948 88 4348 253134 1.69 257482 89 4351 251010 1.70 255361 90 4044 250656 1.59 254700 91 4103 246285 1.64 250388 92 4304 246757 1.71 251061 93 4500 244209 1.81 248709 94 4145 238700 1.71 242845 95 4436 237133 1.84 241569 96 4370 237033 1.81 241403 97 4438 215720 2.02 220158 98 4080 199095 2.01 203175 99 2392 128567 1.83 130959 100 3022 131523 2.25 134545 101 5581 213728 2.54 219309 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 235868 459498 33.92 695366 2 139796 485237 22.37 625033 3 81875 511779 13.79 593654 4 72199 553516 11.54 625715 5 68213 626697 9.82 694910 6 56757 673528 7.77 730285 7 43515 814768 5.07 858283 8 37399 865600 4.14 902999 9 27536 809277 3.29 836813 10 27852 788087 3.41 815939 11 36843 792591 4.44 829434 12 30358 793856 3.68 824214 13 34101 802141 4.08 836242 14 38169 822762 4.43 860931 15 31515 842374 3.61 873889 16 31091 851067 3.52 882158 17 36693 858566 4.10 895259 18 29996 886143 3.27 916139 19 29717 898045 3.20 927762 20 36340 927294 3.77 963634 21 30167 928908 3.15 959075 22 33364 933053 3.45 966417 23 36943 934304 3.80 971247 24 30326 936694 3.14 967020 25 32874 938944 3.38 971818 26 37292 946091 3.79 983383 27 30615 951910 3.12 982525 28 30406 957818 3.08 988224 29 36429 957151 3.67 993580 30 30233 951781 3.08 982014 31 31004 943026 3.18 974030 32 34448 946637 3.51 981085 33 30334 950352 3.09 980686 34 34831 954268 3.52 989099 35 36815 945061 3.75 981876 36 30726 957588 3.11 988314 37 30794 948076 3.15 978870 38 36982 955717 3.73 992699 39 30413 949825 3.10 980238 40 30975 947247 3.17 978222 41 36486 951468 3.69 987954 42 31644 956623 3.20 988267 43 33836 950072 3.44 983908 44 35714 955072 3.60 990786 45 32368 949569 3.30 981937 46 31624 950689 3.22 982313 47 35366 949316 3.59 984682 48 29227 951076 2.98 980303 49 30198 943563 3.10 973761 50 34750 941940 3.56 976690 51 29236 937721 3.02 966957 52 32084 935320 3.32 967404 53 35159 930049 3.64 965208 54 30168 930555 3.14 960723 55 30979 922458 3.25 953437 56 35412 923490 3.69 958902 57 28920 929606 3.02 958526 58 30405 928229 3.17 958634 59 35295 927400 3.67 962695 60 29099 920855 3.06 949954 61 31969 911470 3.39 943439 62 34275 903855 3.65 938130 63 29469 898454 3.18 927923 64 31629 891232 3.43 922861 65 33538 887041 3.64 920579 66 28827 881759 3.17 910586 67 28821 875541 3.19 904362 68 32585 872234 3.60 904819 69 28036 868953 3.13 896989 70 28890 863526 3.24 892416 71 32473 860838 3.64 893311 72 28019 860460 3.15 888479 73 31306 846213 3.57 877519 74 32587 843298 3.72 875885 75 27965 835014 3.24 862979 76 28131 831797 3.27 859928 77 32724 825208 3.81 857932 78 26318 819449 3.11 845767 79 27551 812509 3.28 840060 80 31695 809484 3.77 841179 81 28022 796706 3.40 824728 82 29182 790637 3.56 819819 83 31959 788244 3.90 820203 84 27608 782778 3.41 810386 85 27777 768855 3.49 796632 86 30122 761728 3.80 791850 87 25395 758833 3.24 784228 88 26340 749166 3.40 775506 89 29956 742211 3.88 772167 90 25587 740769 3.34 766356 91 26586 730728 3.51 757314 92 29214 726149 3.87 755363 93 25258 720458 3.39 745716 94 25740 711597 3.49 737337 95 28880 702501 3.95 731381 96 23730 692047 3.32 715777 97 24145 671745 3.47 695890 98 26270 626234 4.03 652504 99 14645 439394 3.23 454039 100 16439 391491 4.03 407930 101 25158 631845 3.83 657003 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 120212 147434 44.91 267646 2 102407 127971 44.45 230378 3 109496 140190 43.85 249686 4 101495 158837 38.99 260332 5 43381 205132 17.46 248513 6 26946 112451 19.33 139397 7 22774 118791 16.09 141565 8 24485 111837 17.96 136322 9 21519 96173 18.28 117692 10 23439 106070 18.10 129509 11 24692 104011 19.19 128703 12 24250 99820 19.55 124070 13 24791 97185 20.32 121976 14 25340 100045 20.21 125385 15 24714 89946 21.55 114660 16 23389 87465 21.10 110854 17 28452 93988 23.24 122440 18 26889 89210 23.16 116099 19 25818 88725 22.54 114543 20 23959 86371 21.72 110330 21 24839 82800 23.08 107639 22 24641 87397 21.99 112038 23 23683 83051 22.19 106734 24 22534 80725 21.82 103259 25 24625 82538 22.98 107163 26 22859 79220 22.39 102079 27 24532 80335 23.39 104867 28 22212 75934 22.63 98146 29 23470 79303 22.84 102773 30 22316 74769 22.99 97085 31 21085 77221 21.45 98306 32 20843 72367 22.36 93210 33 23327 72837 24.26 96164 34 22552 76302 22.81 98854 35 27166 80763 25.17 107929 36 22442 72829 23.56 95271 37 23151 75115 23.56 98266 38 21144 72167 22.66 93311 39 21452 70427 23.35 91879 40 23269 70822 24.73 94091 41 20590 68813 23.03 89403 42 20829 70828 22.72 91657 43 20749 69485 22.99 90234 44 19537 66710 22.65 86247 45 23601 72513 24.56 96114 46 18959 63160 23.09 82119 47 19464 65584 22.89 85048 48 19233 64706 22.91 83939 49 18703 66541 21.94 85244 50 17843 61083 22.61 78926 51 17649 59926 22.75 77575 52 17795 61615 22.41 79410 53 18117 59878 23.23 77995 54 18060 59923 23.16 77983 55 18073 57230 24.00 75303 56 16441 56898 22.42 73339 57 16929 57000 22.90 73929 58 16682 57079 22.62 73761 59 15545 52248 22.93 67793 60 16380 53002 23.61 69382 61 14588 52644 21.70 67232 62 14965 50321 22.92 65286 63 15612 49526 23.97 65138 64 15098 50565 22.99 65663 65 14676 47171 23.73 61847 66 15340 49217 23.76 64557 67 14227 49892 22.19 64119 68 15627 50841 23.51 66468 69 14151 48058 22.75 62209 70 13789 46902 22.72 60691 71 13973 43375 24.37 57348 72 13298 42161 23.98 55459 73 13192 43994 23.07 57186 74 12117 42618 22.14 54735 75 12479 43438 22.32 55917 76 12632 41273 23.43 53905 77 12383 41950 22.79 54333 78 12266 41731 22.72 53997 79 11646 39785 22.64 51431 80 11406 38785 22.73 50191 81 11380 39571 22.34 50951 82 11614 39295 22.81 50909 83 11619 36860 23.97 48479 84 12403 40804 23.31 53207 85 11149 37891 22.73 49040 86 10753 37290 22.38 48043 87 10786 36889 22.62 47675 88 10664 36152 22.78 46816 89 11368 37133 23.44 48501 90 11224 36388 23.57 47612 91 10401 35264 22.78 45665 92 10142 34883 22.53 45025 93 10158 34815 22.59 44973 94 10434 34234 23.36 44668 95 10327 33340 23.65 43667 96 9664 33171 22.56 42835 97 10893 35654 23.40 46547 98 9588 31951 23.08 41539 99 8525 0 100.00 8525 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35754 177082 16.80 212836 2 37117 183696 16.81 220813 3 34824 185698 15.79 220522 4 37138 196115 15.92 233253 5 4840 357474 1.34 362314 6 3542 431098 0.81 434640 7 2265 244503 0.92 246768 8 2389 264726 0.89 267115 9 2180 218763 0.99 220943 10 2144 208259 1.02 210403 11 3072 280207 1.08 283279 12 2304 221125 1.03 223429 13 2275 218788 1.03 221063 14 2321 212500 1.08 214821 15 2245 206360 1.08 208605 16 2096 193203 1.07 195299 17 2325 205227 1.12 207552 18 2583 180423 1.41 183006 19 2121 181450 1.16 183571 20 2190 180102 1.20 182292 21 2522 169229 1.47 171751 22 2222 187367 1.17 189589 23 2040 185116 1.09 187156 24 1884 166752 1.12 168636 25 1993 169699 1.16 171692 26 2083 178181 1.16 180264 27 1998 166292 1.19 168290 28 1932 159533 1.20 161465 29 1978 171950 1.14 173928 30 1895 159782 1.17 161677 31 1925 156608 1.21 158533 32 1892 160810 1.16 162702 33 2008 184308 1.08 186316 34 1880 154509 1.20 156389 35 1987 160610 1.22 162597 36 1905 157097 1.20 159002 37 1841 146772 1.24 148613 38 1948 157558 1.22 159506 39 1942 149817 1.28 151759 40 1990 143127 1.37 145117 41 2002 140668 1.40 142670 42 1930 131600 1.45 133530 43 2030 139391 1.44 141421 44 1769 137054 1.27 138823 45 1782 124708 1.41 126490 46 1742 125154 1.37 126896 47 1914 129452 1.46 131366 48 1781 123523 1.42 125304 49 1898 130100 1.44 131998 50 2024 124786 1.60 126810 51 1828 117120 1.54 118948 52 1853 115525 1.58 117378 53 2087 127056 1.62 129143 54 1847 115027 1.58 116874 55 1815 117443 1.52 119258 56 1718 115228 1.47 116946 57 2052 110956 1.82 113008 58 1776 112372 1.56 114148 59 1464 111606 1.29 113070 60 1508 105915 1.40 107423 61 1334 105051 1.25 106385 62 1363 110485 1.22 111848 63 1279 111531 1.13 112810 64 1218 99019 1.22 100237 65 1280 106691 1.19 107971 66 1114 95789 1.15 96903 67 1223 104872 1.15 106095 68 1208 102480 1.17 103688 69 1170 98334 1.18 99504 70 1105 98160 1.11 99265 71 1095 101291 1.07 102386 72 1054 92079 1.13 93133 73 1053 91745 1.13 92798 74 991 95100 1.03 96091 75 1011 89684 1.11 90695 76 1065 88134 1.19 89199 77 1092 93061 1.16 94153 78 1062 88830 1.18 89892 79 1034 88349 1.16 89383 80 960 84937 1.12 85897 81 1059 81299 1.29 82358 82 1018 80593 1.25 81611 83 944 83251 1.12 84195 84 925 78831 1.16 79756 85 1052 87409 1.19 88461 86 1044 79752 1.29 80796 87 962 79629 1.19 80591 88 950 74908 1.25 75858 89 1036 80279 1.27 81315 90 975 77954 1.24 78929 91 1061 80394 1.30 81455 92 906 77491 1.16 78397 93 898 73295 1.21 74193 94 871 72038 1.19 72909 95 947 73609 1.27 74556 96 1050 69926 1.48 70976 97 920 69923 1.30 70843 98 804 67977 1.17 68781 99 654 0 100.00 654 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 61661 235425 20.76 297086 2 53494 194928 21.53 248422 3 54383 197636 21.58 252019 4 55487 191044 22.51 246531 5 19352 380422 4.84 399774 6 17724 526013 3.26 543737 7 19501 703412 2.70 722913 8 17881 696946 2.50 714827 9 19774 655165 2.93 674939 10 18948 670404 2.75 689352 11 18550 656178 2.75 674728 12 16909 614986 2.68 631895 13 17342 633342 2.67 650684 14 17775 636333 2.72 654108 15 16780 652977 2.51 669757 16 16078 624794 2.51 640872 17 17098 627313 2.65 644411 18 15878 624820 2.48 640698 19 15361 581120 2.58 596481 20 16958 615810 2.68 632768 21 15814 573234 2.68 589048 22 17054 556631 2.97 573685 23 16529 547863 2.93 564392 24 14818 524075 2.75 538893 25 16514 524648 3.05 541162 26 15736 521660 2.93 537396 27 15599 550804 2.75 566403 28 15439 530880 2.83 546319 29 15596 522719 2.90 538315 30 15928 503706 3.07 519634 31 15754 489667 3.12 505421 32 14974 475348 3.05 490322 33 15719 468151 3.25 483870 34 15585 468099 3.22 483684 35 15751 483089 3.16 498840 36 14256 482348 2.87 496604 37 14590 472199 3.00 486789 38 15529 488826 3.08 504355 39 14779 452915 3.16 467694 40 15017 471378 3.09 486395 41 15043 447274 3.25 462317 42 14660 455202 3.12 469862 43 14983 430331 3.36 445314 44 13841 430423 3.12 444264 45 14135 428088 3.20 442223 46 13834 430831 3.11 444665 47 13308 420814 3.07 434122 48 13503 410174 3.19 423677 49 13375 413772 3.13 427147 50 13173 407622 3.13 420795 51 12937 395774 3.17 408711 52 12682 375469 3.27 388151 53 12464 379574 3.18 392038 54 11725 369320 3.08 381045 55 11945 378829 3.06 390774 56 11790 369229 3.09 381019 57 11430 373620 2.97 385050 58 11076 363526 2.96 374602 59 11361 351138 3.13 362499 60 10723 357253 2.91 367976 61 11233 339589 3.20 350822 62 10741 335909 3.10 346650 63 10255 338652 2.94 348907 64 10900 327159 3.22 338059 65 10164 332293 2.97 342457 66 9983 321956 3.01 331939 67 9918 319665 3.01 329583 68 9940 331748 2.91 341688 69 10031 322541 3.02 332572 70 9803 312050 3.05 321853 71 9542 305294 3.03 314836 72 9894 303659 3.16 313553 73 9744 298662 3.16 308406 74 9221 297583 3.01 306804 75 9149 298750 2.97 307899 76 8788 286963 2.97 295751 77 9623 286672 3.25 296295 78 9061 288398 3.05 297459 79 9181 291820 3.05 301001 80 9349 282477 3.20 291826 81 9103 284796 3.10 293899 82 9046 277039 3.16 286085 83 8694 276577 3.05 285271 84 8750 275801 3.08 284551 85 8541 268542 3.08 277083 86 8326 266714 3.03 275040 87 8027 264747 2.94 272774 88 8221 257558 3.09 265779 89 8146 253928 3.11 262074 90 7947 256122 3.01 264069 91 7949 251352 3.07 259301 92 7635 248705 2.98 256340 93 7426 245552 2.94 252978 94 7426 242557 2.97 249983 95 7400 237462 3.02 244862 96 6974 234908 2.88 241882 97 7040 234625 2.91 241665 98 6422 224615 2.78 231037 99 4378 0 100.00 4378