Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-168_S11_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-168_S11_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 22688467
Paired-end alignments with a unique best hit 13218273
Pairs without alignments under any condition 5593168
Pairs that did not map uniquely 3877026
Genomic sequence context not extractable (edges of chromosomes) 81008

Cytosine Methylation

Total C's analysed 422834483
Methylated C's in CpG context 13141284
Methylated C's in CHG context 1973342
Methylated C's in CHH context 8256665
Methylated C's in Unknown context 249152
Unmethylated C's in CpG context 51222082
Unmethylated C's in CHG context 92676562
Unmethylated C's in CHH context 255564548
Unmethylated C's in Unknown context 2150153
Percentage methylation (CpG context) 20.4%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 3.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6449102 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6688163 original bottom strand