EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10509482 lines in total Total number of methylation call strings processed: 21018964 Final Cytosine Methylation Report ================================= Total number of C's analysed: 239595329 Total methylated C's in CpG context: 8422219 Total methylated C's in CHG context: 1686608 Total methylated C's in CHH context: 7882265 Total C to T conversions in CpG context: 23743599 Total C to T conversions in CHG context: 49285780 Total C to T conversions in CHH context: 148574858 C methylated in CpG context: 26.2% C methylated in CHG context: 3.3% C methylated in CHH context: 5.0%