CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 132296 206041 39.10 338337 2 121020 226056 34.87 347076 3 125048 219810 36.26 344858 4 133162 205792 39.29 338954 5 129898 183087 41.50 312985 6 127727 157056 44.85 284783 7 141843 153236 48.07 295079 8 73690 176395 29.47 250085 9 67202 165653 28.86 232855 10 67928 161506 29.61 229434 11 72406 166020 30.37 238426 12 69490 163841 29.78 233331 13 68869 165607 29.37 234476 14 66470 168699 28.26 235169 15 64931 168764 27.78 233695 16 61238 169154 26.58 230392 17 57930 164301 26.07 222231 18 60528 169187 26.35 229715 19 58805 168248 25.90 227053 20 59392 169380 25.96 228772 21 59462 170435 25.86 229897 22 58144 168021 25.71 226165 23 58198 167601 25.77 225799 24 57504 167999 25.50 225503 25 56446 167114 25.25 223560 26 56425 166135 25.35 222560 27 56591 168939 25.09 225530 28 57231 170427 25.14 227658 29 55840 168656 24.87 224496 30 55109 170059 24.47 225168 31 56101 168486 24.98 224587 32 56293 165909 25.33 222202 33 56010 169228 24.87 225238 34 56707 168511 25.18 225218 35 56097 168767 24.95 224864 36 55579 171063 24.52 226642 37 54689 166614 24.71 221303 38 54038 166401 24.51 220439 39 55218 167432 24.80 222650 40 54400 164796 24.82 219196 41 54619 165693 24.79 220312 42 55896 168535 24.91 224431 43 55354 167508 24.84 222862 44 54425 166640 24.62 221065 45 55107 167349 24.77 222456 46 55338 166502 24.95 221840 47 54600 164785 24.89 219385 48 54578 166317 24.71 220895 49 55832 166476 25.11 222308 50 54336 166834 24.57 221170 51 54662 166363 24.73 221025 52 55397 168490 24.74 223887 53 54234 163449 24.91 217683 54 53306 164117 24.52 217423 55 53341 162860 24.67 216201 56 53327 162762 24.68 216089 57 53486 164464 24.54 217950 58 54492 164487 24.88 218979 59 55154 163137 25.27 218291 60 53834 164602 24.65 218436 61 54833 163020 25.17 217853 62 53315 161719 24.79 215034 63 53291 162214 24.73 215505 64 52497 161621 24.52 214118 65 52972 160419 24.82 213391 66 53998 159800 25.26 213798 67 52732 157759 25.05 210491 68 52642 157693 25.03 210335 69 51886 156599 24.89 208485 70 51659 156413 24.83 208072 71 50551 153149 24.82 203700 72 50393 153141 24.76 203534 73 50006 151774 24.78 201780 74 49247 152045 24.47 201292 75 48747 150886 24.42 199633 76 48587 150681 24.38 199268 77 48938 149190 24.70 198128 78 48684 149227 24.60 197911 79 48300 147575 24.66 195875 80 47070 146816 24.28 193886 81 46676 145247 24.32 191923 82 45386 143534 24.02 188920 83 46814 144662 24.45 191476 84 45897 143446 24.24 189343 85 46017 141358 24.56 187375 86 44343 138915 24.20 183258 87 43641 139428 23.84 183069 88 44240 138545 24.20 182785 89 43633 136029 24.29 179662 90 42999 136798 23.92 179797 91 42227 133734 24.00 175961 92 41965 134164 23.83 176129 93 41671 133445 23.80 175116 94 41596 132480 23.90 174076 95 40590 130169 23.77 170759 96 40065 129101 23.68 169166 97 39280 125666 23.81 164946 98 36908 119621 23.58 156529 99 29074 94162 23.59 123236 100 37598 118584 24.07 156182 101 34951 119354 22.65 154305 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 173650 364250 32.28 537900 2 104507 345216 23.24 449723 3 59465 330156 15.26 389621 4 42470 332929 11.31 375399 5 29942 300965 9.05 330907 6 22967 290008 7.34 312975 7 20721 350988 5.57 371709 8 11463 373441 2.98 384904 9 9675 356060 2.65 365735 10 10004 346430 2.81 356434 11 10333 346357 2.90 356690 12 9719 346164 2.73 355883 13 9250 338577 2.66 347827 14 9050 337326 2.61 346376 15 8642 345152 2.44 353794 16 8120 343781 2.31 351901 17 8991 337519 2.59 346510 18 8140 336853 2.36 344993 19 7603 337459 2.20 345062 20 8035 351709 2.23 359744 21 7727 354509 2.13 362236 22 7942 349058 2.22 357000 23 7902 355943 2.17 363845 24 7597 359986 2.07 367583 25 7494 350883 2.09 358377 26 9013 351860 2.50 360873 27 7196 358626 1.97 365822 28 7338 355502 2.02 362840 29 8230 360165 2.23 368395 30 6994 359717 1.91 366711 31 7093 353804 1.97 360897 32 7086 358801 1.94 365887 33 7335 359248 2.00 366583 34 7403 354088 2.05 361491 35 8237 355585 2.26 363822 36 7369 359454 2.01 366823 37 7473 348507 2.10 355980 38 8459 355521 2.32 363980 39 6951 353657 1.93 360608 40 7163 352458 1.99 359621 41 7218 352570 2.01 359788 42 6947 355702 1.92 362649 43 6930 349924 1.94 356854 44 7207 355820 1.99 363027 45 7265 353736 2.01 361001 46 7229 351111 2.02 358340 47 7698 353148 2.13 360846 48 7195 358883 1.97 366078 49 7233 350950 2.02 358183 50 7621 350336 2.13 357957 51 7322 355064 2.02 362386 52 7444 354461 2.06 361905 53 7533 351552 2.10 359085 54 7820 357085 2.14 364905 55 7496 352148 2.08 359644 56 7783 355288 2.14 363071 57 7824 354144 2.16 361968 58 7689 350223 2.15 357912 59 8154 352734 2.26 360888 60 7966 355878 2.19 363844 61 7824 348923 2.19 356747 62 7989 349409 2.24 357398 63 8143 349393 2.28 357536 64 8140 345724 2.30 353864 65 9458 346174 2.66 355632 66 8019 341734 2.29 349753 67 8133 337331 2.35 345464 68 8608 337162 2.49 345770 69 7656 336340 2.23 343996 70 7682 329836 2.28 337518 71 7688 330837 2.27 338525 72 7793 331148 2.30 338941 73 7890 326124 2.36 334014 74 8269 324790 2.48 333059 75 7647 325097 2.30 332744 76 7466 316089 2.31 323555 77 8491 316475 2.61 324966 78 7356 314082 2.29 321438 79 7440 308145 2.36 315585 80 7453 306735 2.37 314188 81 7570 305076 2.42 312646 82 7374 299933 2.40 307307 83 7644 302990 2.46 310634 84 7676 303854 2.46 311530 85 7845 296665 2.58 304510 86 7795 295159 2.57 302954 87 7588 298473 2.48 306061 88 7565 291439 2.53 299004 89 7628 289844 2.56 297472 90 7239 289182 2.44 296421 91 7341 285035 2.51 292376 92 7482 284614 2.56 292096 93 7733 282433 2.67 290166 94 7317 276267 2.58 283584 95 7473 274732 2.65 282205 96 7400 274187 2.63 281587 97 7341 250635 2.85 257976 98 6662 230049 2.81 236711 99 3728 150656 2.41 154384 100 4431 153349 2.81 157780 101 9082 249619 3.51 258701 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 295993 540865 35.37 836858 2 188235 565438 24.98 753673 3 126681 597051 17.50 723732 4 118935 644179 15.59 763114 5 113601 725812 13.53 839413 6 95132 790638 10.74 885770 7 77711 953389 7.54 1031100 8 59713 1018418 5.54 1078131 9 45870 948084 4.61 993954 10 45691 921397 4.72 967088 11 56924 925697 5.79 982621 12 48490 928090 4.97 976580 13 52609 939057 5.31 991666 14 58550 964827 5.72 1023377 15 49470 985555 4.78 1035025 16 49297 997495 4.71 1046792 17 57543 1006129 5.41 1063672 18 48220 1040959 4.43 1089179 19 48288 1056423 4.37 1104711 20 56755 1091266 4.94 1148021 21 48628 1094562 4.25 1143190 22 52627 1099891 4.57 1152518 23 57032 1103560 4.91 1160592 24 49191 1105514 4.26 1154705 25 52451 1106758 4.52 1159209 26 57747 1121124 4.90 1178871 27 48765 1125287 4.15 1174052 28 49083 1132557 4.15 1181640 29 57091 1132506 4.80 1189597 30 48348 1125080 4.12 1173428 31 49840 1116272 4.27 1166112 32 54823 1116803 4.68 1171626 33 48502 1121782 4.14 1170284 34 54246 1126783 4.59 1181029 35 56875 1119370 4.84 1176245 36 48758 1131333 4.13 1180091 37 48882 1120470 4.18 1169352 38 57614 1128343 4.86 1185957 39 48309 1122220 4.13 1170529 40 49473 1114806 4.25 1164279 41 57190 1122344 4.85 1179534 42 50321 1125784 4.28 1176105 43 53606 1119920 4.57 1173526 44 56164 1128137 4.74 1184301 45 50790 1122156 4.33 1172946 46 50415 1123948 4.29 1174363 47 55141 1124830 4.67 1179971 48 47229 1127530 4.02 1174759 49 48543 1117828 4.16 1166371 50 54740 1117324 4.67 1172064 51 47040 1110523 4.06 1157563 52 50676 1106332 4.38 1157008 53 54622 1104189 4.71 1158811 54 47780 1103968 4.15 1151748 55 49235 1094526 4.30 1143761 56 54753 1096628 4.76 1151381 57 46766 1098752 4.08 1145518 58 48057 1099173 4.19 1147230 59 54695 1098909 4.74 1153604 60 46521 1092657 4.08 1139178 61 50159 1083583 4.42 1133742 62 53609 1075739 4.75 1129348 63 46628 1069012 4.18 1115640 64 49642 1062368 4.46 1112010 65 52215 1057197 4.71 1109412 66 46563 1050198 4.25 1096761 67 46355 1044474 4.25 1090829 68 51296 1040745 4.70 1092041 69 45441 1037636 4.20 1083077 70 46229 1029550 4.30 1075779 71 51870 1026404 4.81 1078274 72 45803 1026846 4.27 1072649 73 49438 1010122 4.67 1059560 74 51153 1008804 4.83 1059957 75 45201 998475 4.33 1043676 76 45450 995178 4.37 1040628 77 51346 986680 4.95 1038026 78 43125 981055 4.21 1024180 79 44119 971906 4.34 1016025 80 49770 968915 4.89 1018685 81 45058 956648 4.50 1001706 82 46732 949849 4.69 996581 83 49581 948843 4.97 998424 84 44532 935670 4.54 980202 85 44199 922031 4.57 966230 86 47332 915219 4.92 962551 87 41197 908779 4.34 949976 88 42172 899318 4.48 941490 89 46694 892541 4.97 939235 90 41294 886384 4.45 927678 91 42643 876864 4.64 919507 92 45409 873455 4.94 918864 93 40545 865610 4.47 906155 94 41140 855018 4.59 896158 95 45036 847582 5.05 892618 96 38814 833466 4.45 872280 97 38299 811513 4.51 849812 98 41257 756778 5.17 798035 99 23373 526560 4.25 549933 100 24215 471509 4.88 495724 101 39416 766269 4.89 805685 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 126535 158124 44.45 284659 2 112992 142325 44.26 255317 3 123426 160025 43.54 283451 4 115841 183381 38.71 299222 5 50129 238957 17.34 289086 6 30325 129008 19.03 159333 7 27044 136072 16.58 163116 8 28500 128139 18.19 156639 9 25286 111785 18.45 137071 10 27868 123261 18.44 151129 11 29403 120062 19.67 149465 12 28667 114096 20.08 142763 13 29054 112810 20.48 141864 14 30756 116245 20.92 147001 15 29804 105753 21.99 135557 16 28416 101795 21.82 130211 17 33390 108489 23.53 141879 18 32149 105353 23.38 137502 19 30869 103522 22.97 134391 20 29102 100116 22.52 129218 21 30031 98031 23.45 128062 22 29790 101678 22.66 131468 23 28280 97207 22.54 125487 24 27118 94282 22.34 121400 25 29215 96147 23.30 125362 26 27321 91970 22.90 119291 27 29594 93704 24.00 123298 28 27013 88264 23.43 115277 29 27559 92776 22.90 120335 30 26766 85946 23.75 112712 31 25702 88598 22.49 114300 32 25236 83028 23.31 108264 33 27904 85501 24.61 113405 34 26625 88308 23.17 114933 35 31533 92282 25.47 123815 36 26712 83604 24.21 110316 37 27670 85601 24.43 113271 38 25024 83193 23.12 108217 39 25766 81262 24.07 107028 40 27644 81873 25.24 109517 41 24644 80878 23.35 105522 42 24683 82056 23.12 106739 43 24657 80102 23.54 104759 44 23636 76387 23.63 100023 45 27537 82415 25.04 109952 46 22919 73777 23.70 96696 47 23445 76002 23.58 99447 48 23246 75615 23.51 98861 49 22691 77939 22.55 100630 50 21665 69474 23.77 91139 51 21597 68577 23.95 90174 52 21654 71121 23.34 92775 53 21511 69332 23.68 90843 54 21666 69328 23.81 90994 55 21238 67061 24.05 88299 56 20054 66327 23.22 86381 57 21146 66063 24.25 87209 58 20405 66393 23.51 86798 59 19554 61901 24.01 81455 60 19763 62378 24.06 82141 61 18241 60330 23.22 78571 62 17842 58550 23.36 76392 63 19001 58003 24.68 77004 64 18304 58882 23.71 77186 65 17491 55258 24.04 72749 66 18438 57563 24.26 76001 67 17508 58050 23.17 75558 68 18224 58727 23.68 76951 69 17081 55222 23.62 72303 70 16488 54342 23.28 70830 71 16912 51054 24.88 67966 72 16074 50342 24.20 66416 73 16344 51234 24.19 67578 74 15012 50072 23.07 65084 75 15139 50371 23.11 65510 76 15192 48513 23.85 63705 77 14979 48602 23.56 63581 78 14991 48390 23.65 63381 79 14257 46777 23.36 61034 80 14123 46316 23.37 60439 81 13976 46065 23.28 60041 82 14187 45379 23.82 59566 83 14290 43593 24.69 57883 84 15036 46484 24.44 61520 85 13494 44073 23.44 57567 86 13222 43411 23.35 56633 87 13147 42540 23.61 55687 88 13289 42453 23.84 55742 89 13826 43075 24.30 56901 90 13664 42479 24.34 56143 91 12816 41097 23.77 53913 92 12220 40611 23.13 52831 93 12389 40969 23.22 53358 94 12789 40469 24.01 53258 95 12324 39450 23.80 51774 96 11942 39009 23.44 50951 97 12977 40710 24.17 53687 98 11642 37456 23.71 49098 99 10386 0 100.00 10386 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 45940 206544 18.20 252484 2 50146 219040 18.63 269186 3 46962 222668 17.42 269630 4 49874 233530 17.60 283404 5 8876 427989 2.03 436865 6 7120 518475 1.35 525595 7 4439 285110 1.53 289549 8 4720 306270 1.52 310990 9 4326 257147 1.65 261473 10 4333 244604 1.74 248937 11 5974 314578 1.86 320552 12 4607 256216 1.77 260823 13 4632 256507 1.77 261139 14 4602 247853 1.82 252455 15 4495 240601 1.83 245096 16 4157 223065 1.83 227222 17 4707 238362 1.94 243069 18 4891 211035 2.27 215926 19 4115 209744 1.92 213859 20 4003 209851 1.87 213854 21 4820 200226 2.35 205046 22 4476 217334 2.02 221810 23 4129 213779 1.89 217908 24 3745 195006 1.88 198751 25 3919 197380 1.95 201299 26 4052 208963 1.90 213015 27 4005 192883 2.03 196888 28 3736 186905 1.96 190641 29 4069 198439 2.01 202508 30 3875 187963 2.02 191838 31 3669 183694 1.96 187363 32 3700 187509 1.94 191209 33 4091 210011 1.91 214102 34 3744 182983 2.01 186727 35 3866 185696 2.04 189562 36 3637 182096 1.96 185733 37 3562 172035 2.03 175597 38 3864 182034 2.08 185898 39 3622 173630 2.04 177252 40 3669 167965 2.14 171634 41 3608 164873 2.14 168481 42 3496 154301 2.22 157797 43 3593 161390 2.18 164983 44 3457 161153 2.10 164610 45 3219 147864 2.13 151083 46 3281 149086 2.15 152367 47 3458 153412 2.20 156870 48 3340 146712 2.23 150052 49 3393 151484 2.19 154877 50 3599 147892 2.38 151491 51 3162 137128 2.25 140290 52 3166 135709 2.28 138875 53 3588 150248 2.33 153836 54 3321 136959 2.37 140280 55 3321 138389 2.34 141710 56 3111 135900 2.24 139011 57 3670 129850 2.75 133520 58 3148 130936 2.35 134084 59 2839 131291 2.12 134130 60 2887 125802 2.24 128689 61 2686 124780 2.11 127466 62 2700 128981 2.05 131681 63 2667 130771 2.00 133438 64 2441 118466 2.02 120907 65 2579 124763 2.03 127342 66 2422 115250 2.06 117672 67 2548 122499 2.04 125047 68 2406 121157 1.95 123563 69 2448 116710 2.05 119158 70 2354 116185 1.99 118539 71 2418 118876 1.99 121294 72 2168 109718 1.94 111886 73 2287 109777 2.04 112064 74 2185 110889 1.93 113074 75 2175 106350 2.00 108525 76 2121 104367 1.99 106488 77 2204 110584 1.95 112788 78 2109 104413 1.98 106522 79 2133 103362 2.02 105495 80 2091 101178 2.02 103269 81 2032 97765 2.04 99797 82 2081 96212 2.12 98293 83 2088 98395 2.08 100483 84 1939 93519 2.03 95458 85 2101 102974 2.00 105075 86 1999 94514 2.07 96513 87 2028 93944 2.11 95972 88 1896 88451 2.10 90347 89 2113 95458 2.17 97571 90 2111 91898 2.25 94009 91 2046 94437 2.12 96483 92 1902 91449 2.04 93351 93 1882 86827 2.12 88709 94 1789 85446 2.05 87235 95 1837 87354 2.06 89191 96 1923 84200 2.23 86123 97 1747 82985 2.06 84732 98 1523 79569 1.88 81092 99 1221 0 100.00 1221 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 87306 300496 22.51 387802 2 76286 253015 23.17 329301 3 77107 249171 23.63 326278 4 78246 238838 24.68 317084 5 29270 460904 5.97 490174 6 27574 637182 4.15 664756 7 31506 851784 3.57 883290 8 29727 845174 3.40 874901 9 31955 796315 3.86 828270 10 31044 812138 3.68 843182 11 30809 795686 3.73 826495 12 28640 742484 3.71 771124 13 28770 763335 3.63 792105 14 29492 766321 3.71 795813 15 28265 776053 3.51 804318 16 26912 743549 3.49 770461 17 28394 745486 3.67 773880 18 26700 747081 3.45 773781 19 25449 698736 3.51 724185 20 28433 732815 3.74 761248 21 26710 687491 3.74 714201 22 27595 670765 3.95 698360 23 27093 655865 3.97 682958 24 24765 629692 3.78 654457 25 26845 629529 4.09 656374 26 25478 623771 3.92 649249 27 25896 657361 3.79 683257 28 25169 637229 3.80 662398 29 25773 626553 3.95 652326 30 26198 607612 4.13 633810 31 25215 592983 4.08 618198 32 24656 576499 4.10 601155 33 25408 566668 4.29 592076 34 25026 563501 4.25 588527 35 25530 580399 4.21 605929 36 23538 577434 3.92 600972 37 23691 568071 4.00 591762 38 25356 583333 4.17 608689 39 24335 547842 4.25 572177 40 23893 565761 4.05 589654 41 24578 539990 4.35 564568 42 24023 545921 4.21 569944 43 24216 521644 4.44 545860 44 22707 522106 4.17 544813 45 23197 518689 4.28 541886 46 22591 522934 4.14 545525 47 21929 513623 4.09 535552 48 22544 500166 4.31 522710 49 21657 499990 4.15 521647 50 21715 495063 4.20 516778 51 21337 481677 4.24 503014 52 20512 460466 4.26 480978 53 20243 461982 4.20 482225 54 19420 451380 4.12 470800 55 19662 459719 4.10 479381 56 19484 451109 4.14 470593 57 19218 454051 4.06 473269 58 18440 444855 3.98 463295 59 18862 428740 4.21 447602 60 18276 436443 4.02 454719 61 18619 417905 4.27 436524 62 17769 414974 4.11 432743 63 17322 415586 4.00 432908 64 17792 404023 4.22 421815 65 16942 408363 3.98 425305 66 16828 395453 4.08 412281 67 16427 393552 4.01 409979 68 16527 404125 3.93 420652 69 16878 394191 4.11 411069 70 16366 384149 4.09 400515 71 16090 376321 4.10 392411 72 16515 372835 4.24 389350 73 16451 367726 4.28 384177 74 15713 367725 4.10 383438 75 15644 368401 4.07 384045 76 15031 353862 4.07 368893 77 15525 352023 4.22 367548 78 15517 353545 4.20 369062 79 15598 357560 4.18 373158 80 15377 345244 4.26 360621 81 15593 346738 4.30 362331 82 15274 341156 4.29 356430 83 14564 339647 4.11 354211 84 14691 337288 4.17 351979 85 14108 327841 4.13 341949 86 14097 327830 4.12 341927 87 13797 322436 4.10 336233 88 13593 316032 4.12 329625 89 13597 312795 4.17 326392 90 13685 312643 4.19 326328 91 13444 309358 4.16 322802 92 12711 306524 3.98 319235 93 12622 302122 4.01 314744 94 12492 298095 4.02 310587 95 12498 293796 4.08 306294 96 12069 289919 4.00 301988 97 11578 288250 3.86 299828 98 10436 273314 3.68 283750 99 7192 0 100.00 7192