Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-167_S10_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-167_S10_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 24481250
Paired-end alignments with a unique best hit 14982967
Pairs without alignments under any condition 5375378
Pairs that did not map uniquely 4122905
Genomic sequence context not extractable (edges of chromosomes) 86530

Cytosine Methylation

Total C's analysed 477732150
Methylated C's in CpG context 15227514
Methylated C's in CHG context 3152693
Methylated C's in CHH context 13285449
Methylated C's in Unknown context 314267
Unmethylated C's in CpG context 50861577
Unmethylated C's in CHG context 101768024
Unmethylated C's in CHH context 293436893
Unmethylated C's in Unknown context 2449552
Percentage methylation (CpG context) 23.0%
Percentage methylation (CHG context) 3.0%
Percentage methylation (CHH context) 4.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7423408 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7473029 original bottom strand