CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 107676 187343 36.50 295019 2 99191 202921 32.83 302112 3 98571 187451 34.46 286022 4 105392 165164 38.95 270556 5 102915 145781 41.38 248696 6 100914 124244 44.82 225158 7 110738 123792 47.22 234530 8 56435 140079 28.72 196514 9 50457 131635 27.71 182092 10 50381 128673 28.14 179054 11 53603 132390 28.82 185993 12 51717 131432 28.24 183149 13 51034 134500 27.51 185534 14 48764 134958 26.54 183722 15 47484 135472 25.95 182956 16 44422 135215 24.73 179637 17 42298 131627 24.32 173925 18 44319 136129 24.56 180448 19 43199 134864 24.26 178063 20 43729 136588 24.25 180317 21 43426 137953 23.94 181379 22 42728 135932 23.92 178660 23 42659 135007 24.01 177666 24 41977 136080 23.58 178057 25 41651 134080 23.70 175731 26 41476 133114 23.76 174590 27 41106 135705 23.25 176811 28 42566 135968 23.84 178534 29 41122 135620 23.27 176742 30 40689 135788 23.06 176477 31 41533 134665 23.57 176198 32 40441 133040 23.31 173481 33 40786 134491 23.27 175277 34 41491 133783 23.67 175274 35 40933 134577 23.32 175510 36 40620 135888 23.01 176508 37 39876 132341 23.15 172217 38 39659 132389 23.05 172048 39 40516 133808 23.24 174324 40 39988 132005 23.25 171993 41 40140 132192 23.29 172332 42 40596 133422 23.33 174018 43 39983 133571 23.04 173554 44 39566 132220 23.03 171786 45 39759 132309 23.11 172068 46 40507 132493 23.41 173000 47 39562 130265 23.30 169827 48 39530 131465 23.12 170995 49 40780 131444 23.68 172224 50 39067 132810 22.73 171877 51 39773 131627 23.20 171400 52 40025 133417 23.08 173442 53 39245 128793 23.35 168038 54 38736 128719 23.13 167455 55 38848 127765 23.32 166613 56 38408 126500 23.29 164908 57 39465 128634 23.48 168099 58 39804 128960 23.59 168764 59 40306 127608 24.00 167914 60 39685 128354 23.62 168039 61 39853 125883 24.05 165736 62 39336 126121 23.77 165457 63 38619 125282 23.56 163901 64 38126 124239 23.48 162365 65 38186 122875 23.71 161061 66 38577 121935 24.03 160512 67 38106 119047 24.25 157153 68 37348 119226 23.85 156574 69 36738 117711 23.79 154449 70 36258 117259 23.62 153517 71 35717 114690 23.75 150407 72 35327 114165 23.63 149492 73 34859 112192 23.71 147051 74 34625 112308 23.57 146933 75 33643 111157 23.23 144800 76 33330 110222 23.22 143552 77 33408 108802 23.49 142210 78 33201 107916 23.53 141117 79 32403 106526 23.32 138929 80 32138 105715 23.31 137853 81 31631 104363 23.26 135994 82 30786 103630 22.90 134416 83 31245 103667 23.16 134912 84 30763 102811 23.03 133574 85 30260 100950 23.06 131210 86 29532 98441 23.08 127973 87 28863 98567 22.65 127430 88 29096 97988 22.90 127084 89 28452 96015 22.86 124467 90 27842 95840 22.51 123682 91 27797 93998 22.82 121795 92 27222 93197 22.61 120419 93 27131 92497 22.68 119628 94 26660 92004 22.47 118664 95 26348 90670 22.52 117018 96 26384 90109 22.65 116493 97 25564 86535 22.80 112099 98 23621 82143 22.33 105764 99 19095 65031 22.70 84126 100 24232 81621 22.89 105853 101 22624 81287 21.77 103911 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 138337 278200 33.21 416537 2 80810 264121 23.43 344931 3 40269 255351 13.62 295620 4 24388 259300 8.60 283688 5 15764 234488 6.30 250252 6 13646 225089 5.72 238735 7 9600 271617 3.41 281217 8 5323 290163 1.80 295486 9 4357 276899 1.55 281256 10 4409 268118 1.62 272527 11 4827 268379 1.77 273206 12 4677 271660 1.69 276337 13 4469 263459 1.67 267928 14 4202 263334 1.57 267536 15 3978 268805 1.46 272783 16 3658 269487 1.34 273145 17 4450 264763 1.65 269213 18 3792 265032 1.41 268824 19 3248 264439 1.21 267687 20 3810 276536 1.36 280346 21 3636 280126 1.28 283762 22 3829 275146 1.37 278975 23 3834 278923 1.36 282757 24 3596 284556 1.25 288152 25 3638 276148 1.30 279786 26 4645 277040 1.65 281685 27 3525 282039 1.23 285564 28 3494 280793 1.23 284287 29 4429 282534 1.54 286963 30 3473 284047 1.21 287520 31 3389 277728 1.21 281117 32 3592 282696 1.25 286288 33 3574 281840 1.25 285414 34 3651 277538 1.30 281189 35 4215 278534 1.49 282749 36 3711 281674 1.30 285385 37 3890 272048 1.41 275938 38 4198 277510 1.49 281708 39 3463 276736 1.24 280199 40 3611 275583 1.29 279194 41 3590 273890 1.29 277480 42 3346 277654 1.19 281000 43 3444 271898 1.25 275342 44 3435 274836 1.23 278271 45 3404 274466 1.23 277870 46 3605 271443 1.31 275048 47 3909 272754 1.41 276663 48 3574 278385 1.27 281959 49 3741 271163 1.36 274904 50 3903 271068 1.42 274971 51 3652 275033 1.31 278685 52 3872 272890 1.40 276762 53 3764 269731 1.38 273495 54 4012 275660 1.43 279672 55 3825 270188 1.40 274013 56 3972 272562 1.44 276534 57 4089 271733 1.48 275822 58 4092 269094 1.50 273186 59 4309 270182 1.57 274491 60 4314 270495 1.57 274809 61 4322 264294 1.61 268616 62 4494 265684 1.66 270178 63 4603 263464 1.72 268067 64 4588 259414 1.74 264002 65 5248 259062 1.99 264310 66 4433 254362 1.71 258795 67 4535 249432 1.79 253967 68 4901 249699 1.92 254600 69 4246 247356 1.69 251602 70 4052 241877 1.65 245929 71 4111 241283 1.68 245394 72 4036 240693 1.65 244729 73 4165 235879 1.74 240044 74 4533 234442 1.90 238975 75 3953 234318 1.66 238271 76 3921 225961 1.71 229882 77 4559 225704 1.98 230263 78 3909 223355 1.72 227264 79 3910 217509 1.77 221419 80 3921 217094 1.77 221015 81 3791 214674 1.74 218465 82 3786 211155 1.76 214941 83 4002 212666 1.85 216668 84 3867 211556 1.80 215423 85 4006 206559 1.90 210565 86 3917 206115 1.86 210032 87 3741 206570 1.78 210311 88 3955 201252 1.93 205207 89 3969 200093 1.94 204062 90 3658 199214 1.80 202872 91 3651 194734 1.84 198385 92 3847 194810 1.94 198657 93 3951 192336 2.01 196287 94 3886 189100 2.01 192986 95 3870 185907 2.04 189777 96 3830 184981 2.03 188811 97 3802 169212 2.20 173014 98 3543 154829 2.24 158372 99 2048 101223 1.98 103271 100 2606 102534 2.48 105140 101 4904 167200 2.85 172104 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 210714 394769 34.80 605483 2 128030 415203 23.57 543233 3 78178 449474 14.82 527652 4 70844 486128 12.72 556972 5 68086 550151 11.01 618237 6 56213 598545 8.59 654758 7 41912 733702 5.40 775614 8 36785 785521 4.47 822306 9 27844 734084 3.65 761928 10 28085 714785 3.78 742870 11 36631 717785 4.86 754416 12 30929 723067 4.10 753996 13 33674 737734 4.37 771408 14 38438 753516 4.85 791954 15 31388 774030 3.90 805418 16 31823 781025 3.92 812848 17 37692 789881 4.55 827573 18 31131 815271 3.68 846402 19 31346 831376 3.63 862722 20 37475 856414 4.19 893889 21 31535 860487 3.54 892022 22 34361 861121 3.84 895482 23 37703 862542 4.19 900245 24 31548 862506 3.53 894054 25 34254 868260 3.80 902514 26 38613 875700 4.22 914313 27 31816 878940 3.49 910756 28 31760 884008 3.47 915768 29 37405 882050 4.07 919455 30 32156 876945 3.54 909101 31 32416 867238 3.60 899654 32 35713 868572 3.95 904285 33 31790 870001 3.53 901791 34 35444 873569 3.90 909013 35 37659 867851 4.16 905510 36 31986 875343 3.53 907329 37 31629 868396 3.51 900025 38 37910 874236 4.16 912146 39 30964 868746 3.44 899710 40 32226 863926 3.60 896152 41 37029 868174 4.09 905203 42 32335 872018 3.58 904353 43 34279 864687 3.81 898966 44 36500 869574 4.03 906074 45 32801 861213 3.67 894014 46 31972 863970 3.57 895942 47 35258 861824 3.93 897082 48 29855 861148 3.35 891003 49 30799 854048 3.48 884847 50 35177 851504 3.97 886681 51 29608 843744 3.39 873352 52 31867 841667 3.65 873534 53 35069 835759 4.03 870828 54 30142 836387 3.48 866529 55 30815 827009 3.59 857824 56 35361 827378 4.10 862739 57 29269 829634 3.41 858903 58 30110 826804 3.51 856914 59 34803 821167 4.07 855970 60 28761 814198 3.41 842959 61 31614 804251 3.78 835865 62 33520 791263 4.06 824783 63 28682 786447 3.52 815129 64 30721 779007 3.79 809728 65 32465 772467 4.03 804932 66 27970 762319 3.54 790289 67 27940 756541 3.56 784481 68 31198 751387 3.99 782585 69 27046 745034 3.50 772080 70 27481 737213 3.59 764694 71 31102 733066 4.07 764168 72 26841 729147 3.55 755988 73 29653 716548 3.97 746201 74 30582 712220 4.12 742802 75 26394 704725 3.61 731119 76 26365 697438 3.64 723803 77 30492 689825 4.23 720317 78 24334 683756 3.44 708090 79 25750 676340 3.67 702090 80 29218 669737 4.18 698955 81 25763 659642 3.76 685405 82 26893 653429 3.95 680322 83 28736 649935 4.23 678671 84 25355 641289 3.80 666644 85 25398 629877 3.88 655275 86 27417 625279 4.20 652696 87 23337 617293 3.64 640630 88 23824 609823 3.76 633647 89 26782 603058 4.25 629840 90 23026 600672 3.69 623698 91 23765 590345 3.87 614110 92 25522 587862 4.16 613384 93 22583 579564 3.75 602147 94 22867 573657 3.83 596524 95 25673 566147 4.34 591820 96 21617 554503 3.75 576120 97 21261 540010 3.79 561271 98 23522 501537 4.48 525059 99 12991 351334 3.57 364325 100 14234 312620 4.35 326854 101 22230 505824 4.21 528054 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 86665 114761 43.03 201426 2 76602 103374 42.56 179976 3 82328 114497 41.83 196825 4 76420 130672 36.90 207092 5 32772 169776 16.18 202548 6 19724 91993 17.66 111717 7 17588 99101 15.07 116689 8 18505 93086 16.58 111591 9 16127 80368 16.71 96495 10 17949 88720 16.83 106669 11 19220 86702 18.15 105922 12 18333 82330 18.21 100663 13 19106 80726 19.14 99832 14 19438 82536 19.06 101974 15 18842 75425 19.99 94267 16 18076 72879 19.87 90955 17 21889 77563 22.01 99452 18 20738 74743 21.72 95481 19 19972 73666 21.33 93638 20 18688 71455 20.73 90143 21 19663 69271 22.11 88934 22 18954 72850 20.65 91804 23 17823 68930 20.54 86753 24 17263 66719 20.56 83982 25 18846 67974 21.71 86820 26 17501 64904 21.24 82405 27 18832 66600 22.04 85432 28 17289 61932 21.82 79221 29 17670 64799 21.43 82469 30 17146 60385 22.12 77531 31 16758 63068 20.99 79826 32 16091 58318 21.63 74409 33 17679 59081 23.03 76760 34 17302 61778 21.88 79080 35 20194 65079 23.68 85273 36 16945 57697 22.70 74642 37 17109 59155 22.43 76264 38 15928 58275 21.47 74203 39 16248 56040 22.48 72288 40 17230 56266 23.44 73496 41 15686 55359 22.08 71045 42 15580 56253 21.69 71833 43 15584 54568 22.21 70152 44 14762 52585 21.92 67347 45 17412 56454 23.57 73866 46 14510 50113 22.45 64623 47 14587 51429 22.10 66016 48 14396 49992 22.36 64388 49 13903 52554 20.92 66457 50 13292 46665 22.17 59957 51 13114 46010 22.18 59124 52 13450 47424 22.09 60874 53 13407 45523 22.75 58930 54 12816 46033 21.78 58849 55 13162 43238 23.34 56400 56 12379 42677 22.48 55056 57 12428 42861 22.48 55289 58 12169 42362 22.32 54531 59 11316 39348 22.34 50664 60 11846 39141 23.23 50987 61 10463 39237 21.05 49700 62 10427 37272 21.86 47699 63 11091 36887 23.12 47978 64 10558 37218 22.10 47776 65 10399 34906 22.95 45305 66 10873 36526 22.94 47399 67 10172 36778 21.67 46950 68 10926 37044 22.78 47970 69 9998 34963 22.24 44961 70 9647 34277 21.96 43924 71 9843 31698 23.69 41541 72 9435 31111 23.27 40546 73 9277 32140 22.40 41417 74 8712 31450 21.69 40162 75 8836 31346 21.99 40182 76 8896 29849 22.96 38745 77 8655 30186 22.28 38841 78 8488 30055 22.02 38543 79 8176 29081 21.94 37257 80 8398 28370 22.84 36768 81 8021 28604 21.90 36625 82 8140 28075 22.48 36215 83 8136 26885 23.23 35021 84 8620 28674 23.11 37294 85 7784 27236 22.23 35020 86 7679 26889 22.21 34568 87 7581 26262 22.40 33843 88 7439 25959 22.27 33398 89 8081 26255 23.54 34336 90 7763 26082 22.94 33845 91 7449 25186 22.83 32635 92 7093 24772 22.26 31865 93 7155 25080 22.20 32235 94 7352 24855 22.83 32207 95 7091 24204 22.66 31295 96 6992 24273 22.36 31265 97 7551 24912 23.26 32463 98 6591 22616 22.57 29207 99 6104 0 100.00 6104 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30563 147158 17.20 177721 2 32703 156640 17.27 189343 3 30279 156575 16.20 186854 4 32859 163457 16.74 196316 5 4385 300378 1.44 304763 6 3013 366462 0.82 369475 7 1899 203737 0.92 205636 8 1916 218302 0.87 220218 9 1832 183195 0.99 185027 10 1818 174184 1.03 176002 11 2529 227766 1.10 230295 12 1905 182226 1.03 184131 13 1914 181146 1.05 183060 14 2086 177631 1.16 179717 15 1819 170402 1.06 172221 16 1740 156672 1.10 158412 17 1984 169355 1.16 171339 18 2192 149337 1.45 151529 19 1930 149054 1.28 150984 20 2024 148927 1.34 150951 21 2287 140253 1.60 142540 22 2100 153865 1.35 155965 23 1872 149498 1.24 151370 24 1733 136042 1.26 137775 25 1804 138027 1.29 139831 26 1918 146800 1.29 148718 27 1881 135784 1.37 137665 28 1715 130533 1.30 132248 29 1826 139713 1.29 141539 30 1879 129461 1.43 131340 31 1810 127427 1.40 129237 32 1786 129999 1.36 131785 33 1898 147511 1.27 149409 34 1826 125109 1.44 126935 35 1936 128977 1.48 130913 36 1779 125566 1.40 127345 37 1780 118940 1.47 120720 38 2040 124964 1.61 127004 39 1964 120361 1.61 122325 40 1809 115116 1.55 116925 41 1929 110998 1.71 112927 42 1924 103581 1.82 105505 43 1995 108503 1.81 110498 44 1800 108116 1.64 109916 45 1716 98736 1.71 100452 46 1730 98420 1.73 100150 47 1942 101769 1.87 103711 48 1750 95918 1.79 97668 49 1887 99310 1.86 101197 50 2034 96443 2.07 98477 51 1759 90222 1.91 91981 52 1762 88739 1.95 90501 53 2037 98066 2.03 100103 54 1775 88424 1.97 90199 55 1768 89675 1.93 91443 56 1663 87768 1.86 89431 57 1876 83450 2.20 85326 58 1578 84731 1.83 86309 59 1332 82693 1.59 84025 60 1186 78863 1.48 80049 61 1050 78429 1.32 79479 62 977 81100 1.19 82077 63 997 82485 1.19 83482 64 906 73679 1.21 74585 65 960 78585 1.21 79545 66 891 71288 1.23 72179 67 1005 77225 1.28 78230 68 926 76623 1.19 77549 69 977 72444 1.33 73421 70 869 72143 1.19 73012 71 931 73923 1.24 74854 72 827 67475 1.21 68302 73 830 67656 1.21 68486 74 845 69291 1.20 70136 75 741 65846 1.11 66587 76 754 64214 1.16 64968 77 832 68003 1.21 68835 78 786 65904 1.18 66690 79 779 63841 1.21 64620 80 715 62508 1.13 63223 81 781 60483 1.27 61264 82 767 58810 1.29 59577 83 766 59999 1.26 60765 84 665 57582 1.14 58247 85 777 63407 1.21 64184 86 743 57634 1.27 58377 87 752 57665 1.29 58417 88 722 54648 1.30 55370 89 765 58525 1.29 59290 90 754 56687 1.31 57441 91 795 57493 1.36 58288 92 712 56053 1.25 56765 93 667 52309 1.26 52976 94 650 52008 1.23 52658 95 705 53611 1.30 54316 96 790 51108 1.52 51898 97 715 50594 1.39 51309 98 549 48918 1.11 49467 99 508 0 100.00 508 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 59260 214132 21.68 273392 2 50656 179913 21.97 230569 3 52614 176635 22.95 229249 4 54136 166933 24.49 221069 5 20091 324974 5.82 345065 6 18027 447740 3.87 465767 7 19865 600512 3.20 620377 8 17344 593750 2.84 611094 9 20222 557716 3.50 577938 10 19519 569170 3.32 588689 11 18262 558106 3.17 576368 12 16928 518542 3.16 535470 13 17216 535630 3.11 552846 14 17676 538192 3.18 555868 15 16981 544661 3.02 561642 16 16036 520371 2.99 536407 17 16831 522638 3.12 539469 18 15592 519284 2.92 534876 19 15390 487848 3.06 503238 20 17007 512540 3.21 529547 21 16032 478848 3.24 494880 22 16846 465756 3.49 482602 23 16513 456733 3.49 473246 24 15121 435919 3.35 451040 25 16494 433578 3.66 450072 26 15474 428785 3.48 444259 27 15785 452571 3.37 468356 28 15413 436420 3.41 451833 29 15368 432303 3.43 447671 30 15705 415946 3.64 431651 31 15521 403518 3.70 419039 32 14812 391997 3.64 406809 33 15647 384992 3.91 400639 34 15040 381356 3.79 396396 35 15503 390806 3.82 406309 36 14007 392284 3.45 406291 37 14495 381257 3.66 395752 38 14969 392964 3.67 407933 39 14700 366963 3.85 381663 40 14088 378412 3.59 392500 41 14605 359547 3.90 374152 42 14229 362052 3.78 376281 43 14553 343784 4.06 358337 44 13333 343555 3.74 356888 45 13501 339413 3.83 352914 46 13247 340222 3.75 353469 47 12647 334848 3.64 347495 48 12759 324826 3.78 337585 49 12557 323313 3.74 335870 50 12170 318284 3.68 330454 51 12295 309674 3.82 321969 52 11805 293662 3.86 305467 53 11636 295120 3.79 306756 54 10895 285291 3.68 296186 55 11050 291730 3.65 302780 56 10915 285437 3.68 296352 57 10483 287256 3.52 297739 58 10107 278894 3.50 289001 59 10219 270190 3.64 280409 60 9545 274382 3.36 283927 61 9920 261786 3.65 271706 62 9261 258592 3.46 267853 63 8914 259144 3.33 268058 64 9475 250443 3.65 259918 65 8853 253100 3.38 261953 66 8550 246454 3.35 255004 67 8616 243867 3.41 252483 68 8306 250384 3.21 258690 69 8769 244204 3.47 252973 70 8482 237409 3.45 245891 71 8288 233315 3.43 241603 72 8492 230469 3.55 238961 73 8484 227409 3.60 235893 74 8010 226751 3.41 234761 75 7811 227061 3.33 234872 76 7682 219016 3.39 226698 77 8154 216910 3.62 225064 78 7723 218743 3.41 226466 79 7728 220385 3.39 228113 80 7743 213024 3.51 220767 81 7775 212682 3.53 220457 82 7641 209826 3.51 217467 83 7208 208282 3.34 215490 84 7380 208033 3.43 215413 85 7188 202733 3.42 209921 86 6787 201729 3.25 208516 87 6810 197939 3.33 204749 88 6736 193980 3.36 200716 89 6673 191677 3.36 198350 90 6714 191815 3.38 198529 91 6612 190777 3.35 197389 92 6301 188269 3.24 194570 93 6310 184546 3.31 190856 94 6104 181315 3.26 187419 95 6140 177857 3.34 183997 96 5760 177487 3.14 183247 97 5719 175385 3.16 181104 98 5168 167605 2.99 172773 99 3651 0 100.00 3651