Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-162_S9_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-162_S9_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 22769546
Paired-end alignments with a unique best hit 11176142
Pairs without alignments under any condition 8105839
Pairs that did not map uniquely 3487565
Genomic sequence context not extractable (edges of chromosomes) 63357

Cytosine Methylation

Total C's analysed 336765537
Methylated C's in CpG context 10268810
Methylated C's in CHG context 1728174
Methylated C's in CHH context 7753782
Methylated C's in Unknown context 258944
Unmethylated C's in CpG context 37933764
Unmethylated C's in CHG context 72972330
Unmethylated C's in CHH context 206108677
Unmethylated C's in Unknown context 1762706
Percentage methylation (CpG context) 21.3%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 3.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5530376 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5582409 original bottom strand