EPI-161_S8_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8313985 lines in total Total number of methylation call strings processed: 16627970 Final Cytosine Methylation Report ================================= Total number of C's analysed: 173661827 Total methylated C's in CpG context: 5988422 Total methylated C's in CHG context: 957457 Total methylated C's in CHH context: 4610416 Total C to T conversions in CpG context: 17801995 Total C to T conversions in CHG context: 35915413 Total C to T conversions in CHH context: 108388124 C methylated in CpG context: 25.2% C methylated in CHG context: 2.6% C methylated in CHH context: 4.1%