CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 113323 196193 36.61 309516 2 104032 214595 32.65 318627 3 100976 192907 34.36 293883 4 108728 165304 39.68 274032 5 106283 146432 42.06 252715 6 105194 124497 45.80 229691 7 117057 124253 48.51 241310 8 58169 139641 29.41 197810 9 51989 131511 28.33 183500 10 52067 129685 28.65 181752 11 54875 132442 29.30 187317 12 52905 132274 28.57 185179 13 51923 135041 27.77 186964 14 49707 135758 26.80 185465 15 48587 136225 26.29 184812 16 44870 134962 24.95 179832 17 43529 132009 24.80 175538 18 44612 135015 24.84 179627 19 43323 134934 24.30 178257 20 44058 137455 24.27 181513 21 44242 138067 24.27 182309 22 42745 136525 23.84 179270 23 42724 135454 23.98 178178 24 42474 136209 23.77 178683 25 41986 135077 23.71 177063 26 42419 134080 24.03 176499 27 41815 135788 23.54 177603 28 42786 135312 24.02 178098 29 41121 136604 23.14 177725 30 40785 137079 22.93 177864 31 41229 135189 23.37 176418 32 40510 133459 23.29 173969 33 41214 134555 23.45 175769 34 41810 133196 23.89 175006 35 41106 133578 23.53 174684 36 41177 135969 23.24 177146 37 40002 132448 23.20 172450 38 39396 132005 22.98 171401 39 40640 134107 23.26 174747 40 39970 132373 23.19 172343 41 40127 131951 23.32 172078 42 40903 134454 23.33 175357 43 40608 133005 23.39 173613 44 40029 131368 23.35 171397 45 40473 131482 23.54 171955 46 40516 133161 23.33 173677 47 40080 130581 23.49 170661 48 39735 131569 23.20 171304 49 41278 131860 23.84 173138 50 39804 132203 23.14 172007 51 40203 132970 23.22 173173 52 40578 135141 23.09 175719 53 40090 130060 23.56 170150 54 38768 130036 22.97 168804 55 39111 127389 23.49 166500 56 38598 127127 23.29 165725 57 39456 128584 23.48 168040 58 39905 127842 23.79 167747 59 40955 127057 24.38 168012 60 40174 128572 23.81 168746 61 40084 125271 24.24 165355 62 39674 126274 23.91 165948 63 38910 125364 23.69 164274 64 38192 124986 23.41 163178 65 38399 122951 23.80 161350 66 39061 123833 23.98 162894 67 38416 120316 24.20 158732 68 37283 120114 23.69 157397 69 36993 118517 23.79 155510 70 36795 117462 23.85 154257 71 35994 115215 23.80 151209 72 35646 115641 23.56 151287 73 35330 113931 23.67 149261 74 34861 112703 23.62 147564 75 34150 111359 23.47 145509 76 33628 111014 23.25 144642 77 33810 109071 23.66 142881 78 33434 109604 23.37 143038 79 33129 107749 23.52 140878 80 32547 106510 23.41 139057 81 31884 105690 23.18 137574 82 31105 103825 23.05 134930 83 31665 105181 23.14 136846 84 31179 104314 23.01 135493 85 30950 101963 23.29 132913 86 30129 100513 23.06 130642 87 29492 99622 22.84 129114 88 29436 99037 22.91 128473 89 29118 96852 23.12 125970 90 28624 97190 22.75 125814 91 28395 95476 22.92 123871 92 27777 94904 22.64 122681 93 27644 94212 22.69 121856 94 27308 93323 22.64 120631 95 27130 92397 22.70 119527 96 26949 91547 22.74 118496 97 26244 88363 22.90 114607 98 24574 83440 22.75 108014 99 19399 65212 22.93 84611 100 24918 83263 23.03 108181 101 23465 82542 22.14 106007 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 147421 272332 35.12 419753 2 86996 255144 25.43 342140 3 42980 245450 14.90 288430 4 26386 251676 9.49 278062 5 16950 229760 6.87 246710 6 15101 220690 6.40 235791 7 10010 266716 3.62 276726 8 5060 287998 1.73 293058 9 4209 274546 1.51 278755 10 4218 265442 1.56 269660 11 4803 265314 1.78 270117 12 4390 270052 1.60 274442 13 4213 262161 1.58 266374 14 4154 263463 1.55 267617 15 4065 268987 1.49 273052 16 3487 267682 1.29 271169 17 4370 263001 1.63 267371 18 3772 263959 1.41 267731 19 3182 262786 1.20 265968 20 3574 275978 1.28 279552 21 3410 277964 1.21 281374 22 3608 274696 1.30 278304 23 3683 277839 1.31 281522 24 3486 282431 1.22 285917 25 3516 273723 1.27 277239 26 4503 276338 1.60 280841 27 3434 280905 1.21 284339 28 3313 278075 1.18 281388 29 4067 279770 1.43 283837 30 3213 282224 1.13 285437 31 3301 276572 1.18 279873 32 3390 280293 1.19 283683 33 3483 280131 1.23 283614 34 3368 275944 1.21 279312 35 3917 277657 1.39 281574 36 3521 281705 1.23 285226 37 3666 271912 1.33 275578 38 3948 275583 1.41 279531 39 3208 275787 1.15 278995 40 3360 274182 1.21 277542 41 3361 272974 1.22 276335 42 3265 277273 1.16 280538 43 3143 270462 1.15 273605 44 3292 272671 1.19 275963 45 3371 273691 1.22 277062 46 3332 271909 1.21 275241 47 3637 272689 1.32 276326 48 3318 278415 1.18 281733 49 3449 269888 1.26 273337 50 3649 270317 1.33 273966 51 3417 273573 1.23 276990 52 3456 272847 1.25 276303 53 3521 269260 1.29 272781 54 3689 274624 1.33 278313 55 3600 269675 1.32 273275 56 3786 271894 1.37 275680 57 3714 271842 1.35 275556 58 3786 269080 1.39 272866 59 3964 268531 1.45 272495 60 4075 271048 1.48 275123 61 4129 265934 1.53 270063 62 4174 265072 1.55 269246 63 4247 263736 1.58 267983 64 4309 260873 1.62 265182 65 5013 259010 1.90 264023 66 4257 256368 1.63 260625 67 4298 249097 1.70 253395 68 4558 249836 1.79 254394 69 3982 249238 1.57 253220 70 3835 243010 1.55 246845 71 3882 242223 1.58 246105 72 3987 242056 1.62 246043 73 3817 237304 1.58 241121 74 4210 235605 1.76 239815 75 3732 235651 1.56 239383 76 3807 228541 1.64 232348 77 4202 227956 1.81 232158 78 3864 225307 1.69 229171 79 3745 220133 1.67 223878 80 3780 219764 1.69 223544 81 3709 217063 1.68 220772 82 3570 213265 1.65 216835 83 3727 214765 1.71 218492 84 3650 213690 1.68 217340 85 3819 210101 1.79 213920 86 3917 209254 1.84 213171 87 3590 209478 1.68 213068 88 3931 204115 1.89 208046 89 3661 202795 1.77 206456 90 3581 202404 1.74 205985 91 3553 197397 1.77 200950 92 3754 198071 1.86 201825 93 3891 195754 1.95 199645 94 3759 191855 1.92 195614 95 3852 189372 1.99 193224 96 3728 188888 1.94 192616 97 3550 171342 2.03 174892 98 3351 157603 2.08 160954 99 1913 101706 1.85 103619 100 2534 104244 2.37 106778 101 4999 169960 2.86 174959 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 208561 385108 35.13 593669 2 127211 405066 23.90 532277 3 78217 439243 15.12 517460 4 70989 473662 13.03 544651 5 68042 544229 11.11 612271 6 56158 588706 8.71 644864 7 41309 730831 5.35 772140 8 35668 783319 4.36 818987 9 26712 731218 3.52 757930 10 27267 714640 3.68 741907 11 35494 718290 4.71 753784 12 29960 730643 3.94 760603 13 32915 746631 4.22 779546 14 37016 764932 4.62 801948 15 30151 783152 3.71 813303 16 30543 791110 3.72 821653 17 36273 796578 4.36 832851 18 29577 823699 3.47 853276 19 30210 837219 3.48 867429 20 36021 865129 4.00 901150 21 30010 865308 3.35 895318 22 32858 864854 3.66 897712 23 36224 867705 4.01 903929 24 30477 871135 3.38 901612 25 33060 872957 3.65 906017 26 36206 881841 3.94 918047 27 30588 885179 3.34 915767 28 30789 888505 3.35 919294 29 36008 889419 3.89 925427 30 30138 884717 3.29 914855 31 31316 875353 3.45 906669 32 34476 877369 3.78 911845 33 30016 877269 3.31 907285 34 33707 880881 3.69 914588 35 36156 873192 3.98 909348 36 30419 880951 3.34 911370 37 30412 875817 3.36 906229 38 35706 881547 3.89 917253 39 29245 876610 3.23 905855 40 30586 872330 3.39 902916 41 35491 876536 3.89 912027 42 30790 881674 3.37 912464 43 32826 871305 3.63 904131 44 34286 876756 3.76 911042 45 30991 870317 3.44 901308 46 30309 870809 3.36 901118 47 33716 868953 3.74 902669 48 28212 868994 3.14 897206 49 29023 860919 3.26 889942 50 32916 858384 3.69 891300 51 27925 852718 3.17 880643 52 30378 849106 3.45 879484 53 33150 845272 3.77 878422 54 28276 845289 3.24 873565 55 29340 841478 3.37 870818 56 32825 839430 3.76 872255 57 27620 843259 3.17 870879 58 28515 839054 3.29 867569 59 32904 836951 3.78 869855 60 27221 827828 3.18 855049 61 29627 818133 3.49 847760 62 31297 806955 3.73 838252 63 27026 801769 3.26 828795 64 29145 795291 3.54 824436 65 30405 787412 3.72 817817 66 26350 780748 3.26 807098 67 26657 773483 3.33 800140 68 29183 768220 3.66 797403 69 25525 761884 3.24 787409 70 25751 754231 3.30 779982 71 29343 750991 3.76 780334 72 25390 748414 3.28 773804 73 27423 733694 3.60 761117 74 28345 730992 3.73 759337 75 24538 721684 3.29 746222 76 24823 716721 3.35 741544 77 28209 708525 3.83 736734 78 23215 704436 3.19 727651 79 24014 695389 3.34 719403 80 26963 689816 3.76 716779 81 23820 681219 3.38 705039 82 24949 672092 3.58 697041 83 26612 668337 3.83 694949 84 23514 661066 3.43 684580 85 23792 648438 3.54 672230 86 25490 641183 3.82 666673 87 21776 636886 3.31 658662 88 22193 629796 3.40 651989 89 25270 623020 3.90 648290 90 21745 617312 3.40 639057 91 22123 610303 3.50 632426 92 24045 607163 3.81 631208 93 21005 600459 3.38 621464 94 21469 592605 3.50 614074 95 23640 585076 3.88 608716 96 19846 572506 3.35 592352 97 20181 555655 3.50 575836 98 21433 518141 3.97 539574 99 12187 361168 3.26 373355 100 13271 320182 3.98 333453 101 20731 521034 3.83 541765 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 87681 115791 43.09 203472 2 77366 104709 42.49 182075 3 83131 115537 41.84 198668 4 77667 132477 36.96 210144 5 33463 171371 16.34 204834 6 20036 91504 17.96 111540 7 18084 98539 15.51 116623 8 18851 92799 16.88 111650 9 16583 80527 17.08 97110 10 18153 89219 16.91 107372 11 19746 87508 18.41 107254 12 18839 83612 18.39 102451 13 19468 81591 19.26 101059 14 20273 82801 19.67 103074 15 19522 74958 20.66 94480 16 18573 73380 20.20 91953 17 22808 78365 22.54 101173 18 21075 74415 22.07 95490 19 20175 73662 21.50 93837 20 19144 72092 20.98 91236 21 19966 69916 22.21 89882 22 19598 72387 21.31 91985 23 18353 69103 20.99 87456 24 17607 66504 20.93 84111 25 19614 69206 22.08 88820 26 17697 65816 21.19 83513 27 19457 66259 22.70 85716 28 17851 63276 22.00 81127 29 18098 65728 21.59 83826 30 17495 61491 22.15 78986 31 17056 63221 21.25 80277 32 16401 59560 21.59 75961 33 17890 59675 23.06 77565 34 17333 61339 22.03 78672 35 20555 63990 24.31 84545 36 17400 58630 22.89 76030 37 17604 59786 22.75 77390 38 16494 58918 21.87 75412 39 16766 56415 22.91 73181 40 17818 56132 24.09 73950 41 16291 55230 22.78 71521 42 15983 55713 22.29 71696 43 16384 54689 23.05 71073 44 15266 52784 22.43 68050 45 17604 56559 23.74 74163 46 14856 49851 22.96 64707 47 15095 51453 22.68 66548 48 14985 50472 22.89 65457 49 14541 52357 21.74 66898 50 13809 47001 22.71 60810 51 13654 46179 22.82 59833 52 13993 47637 22.70 61630 53 14076 46083 23.40 60159 54 13434 45489 22.80 58923 55 13562 44061 23.54 57623 56 12637 42712 22.83 55349 57 12869 43186 22.96 56055 58 12475 42996 22.49 55471 59 12148 39993 23.30 52141 60 12171 39770 23.43 51941 61 11085 39714 21.82 50799 62 11015 38015 22.47 49030 63 11761 37311 23.97 49072 64 10936 37853 22.41 48789 65 11002 35426 23.70 46428 66 11322 36668 23.59 47990 67 10652 36893 22.40 47545 68 11330 37365 23.27 48695 69 10317 35613 22.46 45930 70 10060 35001 22.33 45061 71 10350 32241 24.30 42591 72 9803 32013 23.44 41816 73 9781 32961 22.88 42742 74 8998 31286 22.34 40284 75 9188 31985 22.32 41173 76 9164 30542 23.08 39706 77 9076 30821 22.75 39897 78 9027 30979 22.56 40006 79 8595 29446 22.59 38041 80 8482 28544 22.91 37026 81 8355 28955 22.39 37310 82 8301 28810 22.37 37111 83 8417 27490 23.44 35907 84 9112 28879 23.98 37991 85 8053 28021 22.32 36074 86 7928 27688 22.26 35616 87 7955 26688 22.96 34643 88 7753 26283 22.78 34036 89 8149 26456 23.55 34605 90 7971 26372 23.21 34343 91 7810 25538 23.42 33348 92 7316 25278 22.45 32594 93 7268 25400 22.25 32668 94 7497 25072 23.02 32569 95 7381 24453 23.19 31834 96 7281 24310 23.05 31591 97 7834 24819 23.99 32653 98 7001 23012 23.33 30013 99 6102 0 100.00 6102 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30735 150145 16.99 180880 2 32500 158758 16.99 191258 3 30121 160072 15.84 190193 4 32554 165076 16.47 197630 5 4152 301722 1.36 305874 6 2953 366698 0.80 369651 7 1872 200398 0.93 202270 8 1815 217325 0.83 219140 9 1807 182288 0.98 184095 10 1880 175192 1.06 177072 11 2383 227117 1.04 229500 12 1842 182789 1.00 184631 13 1835 180619 1.01 182454 14 1884 178372 1.05 180256 15 1777 170107 1.03 171884 16 1679 158366 1.05 160045 17 1821 169188 1.06 171009 18 2055 149893 1.35 151948 19 1838 149784 1.21 151622 20 1855 149171 1.23 151026 21 2243 141500 1.56 143743 22 1862 154503 1.19 156365 23 1767 150289 1.16 152056 24 1610 137344 1.16 138954 25 1699 138825 1.21 140524 26 1768 146509 1.19 148277 27 1735 135930 1.26 137665 28 1708 129882 1.30 131590 29 1731 138833 1.23 140564 30 1776 130750 1.34 132526 31 1674 126631 1.30 128305 32 1716 130303 1.30 132019 33 1900 145014 1.29 146914 34 1736 126044 1.36 127780 35 1838 128805 1.41 130643 36 1736 126228 1.36 127964 37 1686 118943 1.40 120629 38 1821 123575 1.45 125396 39 1761 119438 1.45 121199 40 1794 113533 1.56 115327 41 1791 112338 1.57 114129 42 1712 104928 1.61 106640 43 1884 108548 1.71 110432 44 1775 109229 1.60 111004 45 1656 99469 1.64 101125 46 1727 99574 1.70 101301 47 1690 102730 1.62 104420 48 1664 97560 1.68 99224 49 1740 100767 1.70 102507 50 1832 97314 1.85 99146 51 1701 91375 1.83 93076 52 1732 89699 1.89 91431 53 1899 98922 1.88 100821 54 1579 89941 1.73 91520 55 1676 90455 1.82 92131 56 1485 89101 1.64 90586 57 1700 83888 1.99 85588 58 1418 85618 1.63 87036 59 1266 84452 1.48 85718 60 1127 80124 1.39 81251 61 965 79632 1.20 80597 62 996 82535 1.19 83531 63 959 84013 1.13 84972 64 864 75522 1.13 76386 65 993 79361 1.24 80354 66 845 72638 1.15 73483 67 932 77787 1.18 78719 68 895 77151 1.15 78046 69 905 74168 1.21 75073 70 847 73354 1.14 74201 71 863 74961 1.14 75824 72 829 68719 1.19 69548 73 805 69209 1.15 70014 74 764 70875 1.07 71639 75 791 66949 1.17 67740 76 729 65307 1.10 66036 77 820 69028 1.17 69848 78 739 65684 1.11 66423 79 782 65289 1.18 66071 80 738 63323 1.15 64061 81 766 60692 1.25 61458 82 733 60018 1.21 60751 83 735 61159 1.19 61894 84 678 57857 1.16 58535 85 705 63572 1.10 64277 86 716 58879 1.20 59595 87 688 57781 1.18 58469 88 677 55224 1.21 55901 89 742 59137 1.24 59879 90 748 57411 1.29 58159 91 717 57906 1.22 58623 92 657 56441 1.15 57098 93 678 53619 1.25 54297 94 690 52721 1.29 53411 95 649 53868 1.19 54517 96 689 51648 1.32 52337 97 689 51272 1.33 51961 98 582 49345 1.17 49927 99 456 0 100.00 456 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 58883 224479 20.78 283362 2 50167 187869 21.08 238036 3 52104 183970 22.07 236074 4 53117 172574 23.54 225691 5 19430 334475 5.49 353905 6 17101 459110 3.59 476211 7 19194 610287 3.05 629481 8 16893 603525 2.72 620418 9 19469 567086 3.32 586555 10 18848 580556 3.14 599404 11 17505 567809 2.99 585314 12 15827 527071 2.92 542898 13 16561 546809 2.94 563370 14 16801 548673 2.97 565474 15 16420 554457 2.88 570877 16 15548 529121 2.85 544669 17 16264 530224 2.98 546488 18 14848 525152 2.75 540000 19 14406 494965 2.83 509371 20 16292 518022 3.05 534314 21 15313 486569 3.05 501882 22 15950 472816 3.26 488766 23 15636 464326 3.26 479962 24 14109 443793 3.08 457902 25 15952 441811 3.48 457763 26 14675 437904 3.24 452579 27 14947 460377 3.14 475324 28 14779 443944 3.22 458723 29 14605 437376 3.23 451981 30 14965 423426 3.41 438391 31 14749 412313 3.45 427062 32 13980 402258 3.36 416238 33 14610 393266 3.58 407876 34 14588 391229 3.59 405817 35 14471 400228 3.49 414699 36 13146 399039 3.19 412185 37 13656 390549 3.38 404205 38 13969 401948 3.36 415917 39 13428 375024 3.46 388452 40 13684 386185 3.42 399869 41 13846 368925 3.62 382771 42 13305 371912 3.45 385217 43 13760 353474 3.75 367234 44 12693 353620 3.47 366313 45 12748 350368 3.51 363116 46 12808 351225 3.52 364033 47 12019 343607 3.38 355626 48 12041 335363 3.47 347404 49 11811 334570 3.41 346381 50 11652 328917 3.42 340569 51 11487 321021 3.45 332508 52 11144 304362 3.53 315506 53 10999 305294 3.48 316293 54 10373 297201 3.37 307574 55 10380 301904 3.32 312284 56 10089 295890 3.30 305979 57 9729 297449 3.17 307178 58 9462 288377 3.18 297839 59 9494 281276 3.27 290770 60 8688 285779 2.95 294467 61 9193 270924 3.28 280117 62 8629 269734 3.10 278363 63 8332 268027 3.01 276359 64 8601 261687 3.18 270288 65 8400 262239 3.10 270639 66 7938 255146 3.02 263084 67 8002 253388 3.06 261390 68 7943 260223 2.96 268166 69 7880 252062 3.03 259942 70 7918 246538 3.11 254456 71 7446 242487 2.98 249933 72 7792 239342 3.15 247134 73 7686 236550 3.15 244236 74 7397 235408 3.05 242805 75 7255 234465 3.00 241720 76 7067 227138 3.02 234205 77 7594 224988 3.27 232582 78 7084 225760 3.04 232844 79 7064 227565 3.01 234629 80 7198 220510 3.16 227708 81 7099 220729 3.12 227828 82 6979 217151 3.11 224130 83 6700 214845 3.02 221545 84 6803 214745 3.07 221548 85 6627 208982 3.07 215609 86 6319 208724 2.94 215043 87 6246 204515 2.96 210761 88 6267 200832 3.03 207099 89 6117 198269 2.99 204386 90 6079 197816 2.98 203895 91 6145 196032 3.04 202177 92 5898 194236 2.95 200134 93 5754 191304 2.92 197058 94 5571 188070 2.88 193641 95 5716 185109 3.00 190825 96 5398 182766 2.87 188164 97 5120 182289 2.73 187409 98 4698 172575 2.65 177273 99 3317 0 100.00 3317