Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-161_S8_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-161_S8_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 24510805
Paired-end alignments with a unique best hit 11813144
Pairs without alignments under any condition 9041136
Pairs that did not map uniquely 3656525
Genomic sequence context not extractable (edges of chromosomes) 53984

Cytosine Methylation

Total C's analysed 360081593
Methylated C's in CpG context 10986236
Methylated C's in CHG context 1798167
Methylated C's in CHH context 7594744
Methylated C's in Unknown context 262349
Unmethylated C's in CpG context 41581467
Unmethylated C's in CHG context 76778374
Unmethylated C's in CHH context 221342605
Unmethylated C's in Unknown context 1863351
Percentage methylation (CpG context) 20.9%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 3.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5814153 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5945007 original bottom strand