EPI-160_S7_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 11711322 lines in total Total number of methylation call strings processed: 23422644 Final Cytosine Methylation Report ================================= Total number of C's analysed: 246513535 Total methylated C's in CpG context: 8951340 Total methylated C's in CHG context: 1370402 Total methylated C's in CHH context: 5350906 Total C to T conversions in CpG context: 25233290 Total C to T conversions in CHG context: 51865829 Total C to T conversions in CHH context: 153741768 C methylated in CpG context: 26.2% C methylated in CHG context: 2.6% C methylated in CHH context: 3.4%