CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 158267 275922 36.45 434189 2 150421 302980 33.18 453401 3 147814 275724 34.90 423538 4 157271 231390 40.46 388661 5 152755 199754 43.33 352509 6 151331 170481 47.02 321812 7 167169 173156 49.12 340325 8 84852 191244 30.73 276096 9 75110 178117 29.66 253227 10 76126 177388 30.03 253514 11 80076 181047 30.67 261123 12 77291 183098 29.68 260389 13 77225 187778 29.14 265003 14 73513 190216 27.87 263729 15 71212 190055 27.26 261267 16 66674 188755 26.10 255429 17 64013 185126 25.69 249139 18 66196 189642 25.87 255838 19 64238 188393 25.43 252631 20 64705 192424 25.16 257129 21 64328 192643 25.03 256971 22 63318 192178 24.78 255496 23 62948 190735 24.81 253683 24 62313 190817 24.62 253130 25 62174 188936 24.76 251110 26 61525 187036 24.75 248561 27 61444 191496 24.29 252940 28 63089 190568 24.87 253657 29 61134 192721 24.08 253855 30 60400 192543 23.88 252943 31 61725 189382 24.58 251107 32 60280 186513 24.43 246793 33 60778 188637 24.37 249415 34 61787 187605 24.78 249392 35 61304 186818 24.71 248122 36 60659 190679 24.13 251338 37 59383 186847 24.12 246230 38 58987 186343 24.04 245330 39 60465 187983 24.34 248448 40 59695 186900 24.21 246595 41 59825 185211 24.41 245036 42 61030 188682 24.44 249712 43 60071 187277 24.29 247348 44 58966 185423 24.13 244389 45 60028 185750 24.42 245778 46 60467 187975 24.34 248442 47 58828 182492 24.38 241320 48 58948 185172 24.15 244120 49 60532 185194 24.63 245726 50 59126 186059 24.11 245185 51 59165 185413 24.19 244578 52 60129 189910 24.05 250039 53 58564 183127 24.23 241691 54 57734 182625 24.02 240359 55 57768 179495 24.35 237263 56 57268 178733 24.27 236001 57 58961 180107 24.66 239068 58 59361 180944 24.70 240305 59 60482 178519 25.31 239001 60 59463 179836 24.85 239299 61 59948 176534 25.35 236482 62 58701 177787 24.82 236488 63 57611 176176 24.64 233787 64 57084 174964 24.60 232048 65 57393 171777 25.04 229170 66 58146 172866 25.17 231012 67 56784 167741 25.29 224525 68 55658 168193 24.86 223851 69 55280 166567 24.92 221847 70 54386 166106 24.67 220492 71 53739 161693 24.94 215432 72 52844 162408 24.55 215252 73 52847 159363 24.90 212210 74 52292 159027 24.75 211319 75 50522 157724 24.26 208246 76 50355 156415 24.35 206770 77 50602 154072 24.72 204674 78 50308 153375 24.70 203683 79 49494 151391 24.64 200885 80 48237 150808 24.23 199045 81 48199 148651 24.49 196850 82 46914 146970 24.20 193884 83 47004 147458 24.17 194462 84 46474 148030 23.89 194504 85 46710 143712 24.53 190422 86 44886 141983 24.02 186869 87 43910 141205 23.72 185115 88 44174 139909 24.00 184083 89 43153 136863 23.97 180016 90 43298 137589 23.94 180887 91 42643 134288 24.10 176931 92 42180 134217 23.91 176397 93 41702 133568 23.79 175270 94 41492 132087 23.90 173579 95 40770 131099 23.72 171869 96 40539 130666 23.68 171205 97 39413 126413 23.77 165826 98 36580 118039 23.66 154619 99 29434 94217 23.80 123651 100 37544 118082 24.12 155626 101 34368 116701 22.75 151069 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 222043 381286 36.80 603329 2 136077 365432 27.13 501509 3 66413 355957 15.72 422370 4 37177 356189 9.45 393366 5 23624 323988 6.80 347612 6 21463 317613 6.33 339076 7 14672 378771 3.73 393443 8 7221 404536 1.75 411757 9 6077 385872 1.55 391949 10 6072 376216 1.59 382288 11 6427 381182 1.66 387609 12 6264 386576 1.59 392840 13 5959 375637 1.56 381596 14 5555 374678 1.46 380233 15 5654 383441 1.45 389095 16 4978 382878 1.28 387856 17 5675 376963 1.48 382638 18 5312 379056 1.38 384368 19 4536 376447 1.19 380983 20 4882 394495 1.22 399377 21 4800 398511 1.19 403311 22 5067 393118 1.27 398185 23 5176 398691 1.28 403867 24 4562 403844 1.12 408406 25 4747 391475 1.20 396222 26 5791 394306 1.45 400097 27 4703 402272 1.16 406975 28 4627 399538 1.14 404165 29 5415 402854 1.33 408269 30 4600 405572 1.12 410172 31 4585 395317 1.15 399902 32 4559 402730 1.12 407289 33 4624 402401 1.14 407025 34 4638 396473 1.16 401111 35 5291 397834 1.31 403125 36 4728 402091 1.16 406819 37 4826 388528 1.23 393354 38 5256 395527 1.31 400783 39 4696 393300 1.18 397996 40 4622 393004 1.16 397626 41 4652 391714 1.17 396366 42 4538 396601 1.13 401139 43 4638 387489 1.18 392127 44 4444 392071 1.12 396515 45 4717 392988 1.19 397705 46 4750 387119 1.21 391869 47 4858 389467 1.23 394325 48 4659 397366 1.16 402025 49 4727 385783 1.21 390510 50 4861 385315 1.25 390176 51 4641 390300 1.18 394941 52 4895 389157 1.24 394052 53 4785 385226 1.23 390011 54 4970 392659 1.25 397629 55 5095 384452 1.31 389547 56 4969 388211 1.26 393180 57 5300 388126 1.35 393426 58 5450 383084 1.40 388534 59 5617 383875 1.44 389492 60 5561 386553 1.42 392114 61 5554 379989 1.44 385543 62 5690 377586 1.48 383276 63 5777 374905 1.52 380682 64 5805 372261 1.54 378066 65 6408 368792 1.71 375200 66 5619 363543 1.52 369162 67 5638 354825 1.56 360463 68 5978 357265 1.65 363243 69 5511 354688 1.53 360199 70 5265 346567 1.50 351832 71 5365 345706 1.53 351071 72 5286 346113 1.50 351399 73 5306 338733 1.54 344039 74 5605 335520 1.64 341125 75 5182 335875 1.52 341057 76 5024 327663 1.51 332687 77 5510 326695 1.66 332205 78 5062 322748 1.54 327810 79 5144 315326 1.61 320470 80 5111 315135 1.60 320246 81 5095 312621 1.60 317716 82 5072 306141 1.63 311213 83 5226 308607 1.67 313833 84 5043 308559 1.61 313602 85 5139 300246 1.68 305385 86 5081 300772 1.66 305853 87 4927 301987 1.61 306914 88 5191 293399 1.74 298590 89 4994 291648 1.68 296642 90 4830 289894 1.64 294724 91 5046 283266 1.75 288312 92 4931 284636 1.70 289567 93 5060 281465 1.77 286525 94 4945 275251 1.76 280196 95 5031 272826 1.81 277857 96 5112 272977 1.84 278089 97 4971 246965 1.97 251936 98 4685 226875 2.02 231560 99 2752 146692 1.84 149444 100 3401 149436 2.23 152837 101 6534 244323 2.60 250857 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 307290 562320 35.34 869610 2 177330 598363 22.86 775693 3 101742 661075 13.34 762817 4 86522 698774 11.02 785296 5 81295 802615 9.20 883910 6 66073 860337 7.13 926410 7 51384 1047829 4.67 1099213 8 40315 1121086 3.47 1161401 9 31111 1046439 2.89 1077550 10 31274 1027417 2.95 1058691 11 39401 1030112 3.68 1069513 12 33611 1039587 3.13 1073198 13 37177 1051779 3.41 1088956 14 40547 1079550 3.62 1120097 15 34729 1101847 3.06 1136576 16 33701 1116724 2.93 1150425 17 39315 1122538 3.38 1161853 18 32982 1158750 2.77 1191732 19 33201 1176144 2.75 1209345 20 39059 1216132 3.11 1255191 21 33670 1218091 2.69 1251761 22 36065 1221742 2.87 1257807 23 39604 1218438 3.15 1258042 24 33622 1220646 2.68 1254268 25 35662 1227836 2.82 1263498 26 39758 1236785 3.11 1276543 27 33899 1243019 2.65 1276918 28 33773 1247752 2.64 1281525 29 39296 1243828 3.06 1283124 30 33588 1238416 2.64 1272004 31 34322 1224545 2.73 1258867 32 37363 1228272 2.95 1265635 33 33451 1229105 2.65 1262556 34 37014 1235805 2.91 1272819 35 39090 1226558 3.09 1265648 36 33394 1236217 2.63 1269611 37 34091 1227046 2.70 1261137 38 38827 1233395 3.05 1272222 39 32848 1227214 2.61 1260062 40 33935 1224004 2.70 1257939 41 39041 1229459 3.08 1268500 42 34292 1235657 2.70 1269949 43 35936 1224095 2.85 1260031 44 37874 1228995 2.99 1266869 45 34857 1219538 2.78 1254395 46 33892 1220831 2.70 1254723 47 36903 1217092 2.94 1253995 48 31941 1217969 2.56 1249910 49 32192 1207121 2.60 1239313 50 36945 1201052 2.98 1237997 51 31512 1194514 2.57 1226026 52 33713 1190113 2.75 1223826 53 36505 1180408 3.00 1216913 54 31791 1183809 2.62 1215600 55 32793 1174736 2.72 1207529 56 36103 1171241 2.99 1207344 57 30777 1177519 2.55 1208296 58 31917 1170011 2.66 1201928 59 36413 1168971 3.02 1205384 60 30725 1155216 2.59 1185941 61 33059 1144395 2.81 1177454 62 34882 1128833 3.00 1163715 63 30647 1118727 2.67 1149374 64 32277 1107448 2.83 1139725 65 34019 1100420 3.00 1134439 66 30029 1088489 2.68 1118518 67 30167 1077670 2.72 1107837 68 32552 1071387 2.95 1103939 69 28853 1063427 2.64 1092280 70 29220 1055192 2.69 1084412 71 32767 1048590 3.03 1081357 72 28725 1042042 2.68 1070767 73 30741 1023996 2.91 1054737 74 32090 1021437 3.05 1053527 75 27964 1009616 2.70 1037580 76 28050 1001757 2.72 1029807 77 31715 989442 3.11 1021157 78 26327 983155 2.61 1009482 79 27672 973748 2.76 1001420 80 30616 965818 3.07 996434 81 27207 952220 2.78 979427 82 28069 941383 2.90 969452 83 29957 936696 3.10 966653 84 26930 926510 2.82 953440 85 27048 910279 2.89 937327 86 28455 903350 3.05 931805 87 24809 896024 2.69 920833 88 25662 884906 2.82 910568 89 28452 875006 3.15 903458 90 24359 870816 2.72 895175 91 25293 859915 2.86 885208 92 27234 853670 3.09 880904 93 24292 847278 2.79 871570 94 24725 835112 2.88 859837 95 26914 823048 3.17 849962 96 23331 809910 2.80 833241 97 23173 785329 2.87 808502 98 24460 730459 3.24 754919 99 14285 510747 2.72 525032 100 15730 454822 3.34 470552 101 23866 733730 3.15 757596 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 143619 173546 45.28 317165 2 123576 150733 45.05 274309 3 131403 168107 43.87 299510 4 118561 185833 38.95 304394 5 51246 237975 17.72 289221 6 31763 130865 19.53 162628 7 27957 140845 16.56 168802 8 29151 132255 18.06 161406 9 25450 113564 18.31 139014 10 27324 125685 17.86 153009 11 29664 123519 19.37 153183 12 28534 119059 19.33 147593 13 29560 115209 20.42 144769 14 30198 118917 20.25 149115 15 29878 107362 21.77 137240 16 27838 103747 21.16 131585 17 34252 111530 23.50 145782 18 32348 106867 23.24 139215 19 30696 106070 22.44 136766 20 28443 102589 21.71 131032 21 30111 100480 23.06 130591 22 29921 104606 22.24 134527 23 28377 99027 22.27 127404 24 26902 95961 21.90 122863 25 29239 98102 22.96 127341 26 27113 94364 22.32 121477 27 29352 94979 23.61 124331 28 26718 89861 22.92 116579 29 27935 93916 22.93 121851 30 26763 87984 23.32 114747 31 25932 91098 22.16 117030 32 24793 85825 22.41 110618 33 27815 86665 24.30 114480 34 27135 89023 23.36 116158 35 32518 94896 25.52 127414 36 26845 85018 24.00 111863 37 27995 88477 24.04 116472 38 25440 83676 23.31 109116 39 25606 81544 23.90 107150 40 28059 81772 25.55 109831 41 24483 80350 23.35 104833 42 25135 82690 23.31 107825 43 24818 79881 23.70 104699 44 23162 77289 23.06 100451 45 28206 83454 25.26 111660 46 22449 72541 23.63 94990 47 22832 73937 23.59 96769 48 22652 73585 23.54 96237 49 22133 75555 22.66 97688 50 21180 69083 23.46 90263 51 20918 67473 23.67 88391 52 20715 69088 23.07 89803 53 21088 66792 24.00 87880 54 21015 66372 24.05 87387 55 20896 64351 24.51 85247 56 19173 63201 23.28 82374 57 19891 63000 24.00 82891 58 19304 63610 23.28 82914 59 18080 58345 23.66 76425 60 18586 58475 24.12 77061 61 16949 57706 22.70 74655 62 16636 55284 23.13 71920 63 18219 54634 25.01 72853 64 16897 55372 23.38 72269 65 16796 51660 24.54 68456 66 17527 54757 24.25 72284 67 16047 54942 22.60 70989 68 17937 56102 24.23 74039 69 16135 52636 23.46 68771 70 15539 51557 23.16 67096 71 16447 48156 25.46 64603 72 15148 47479 24.19 62627 73 15307 48085 24.15 63392 74 13541 47347 22.24 60888 75 14065 47771 22.75 61836 76 14436 45340 24.15 59776 77 13814 45883 23.14 59697 78 13909 45782 23.30 59691 79 13375 43534 23.50 56909 80 13201 42926 23.52 56127 81 13173 43146 23.39 56319 82 13070 42787 23.40 55857 83 13029 40974 24.13 54003 84 14590 44531 24.68 59121 85 12678 41462 23.42 54140 86 12451 40979 23.30 53430 87 12323 40176 23.47 52499 88 12162 39405 23.58 51567 89 13098 39810 24.76 52908 90 12974 39445 24.75 52419 91 11984 38580 23.70 50564 92 11276 38064 22.85 49340 93 11585 37877 23.42 49462 94 11975 37869 24.02 49844 95 11588 36682 24.01 48270 96 11363 36364 23.81 47727 97 12294 38129 24.38 50423 98 10956 34686 24.00 45642 99 9771 0 100.00 9771 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43675 215180 16.87 258855 2 44679 221696 16.77 266375 3 42343 225885 15.79 268228 4 45385 237524 16.04 282909 5 5483 432123 1.25 437606 6 3990 526665 0.75 530655 7 2601 294330 0.88 296931 8 2610 319258 0.81 321868 9 2381 262412 0.90 264793 10 2424 251980 0.95 254404 11 3328 339194 0.97 342522 12 2574 264918 0.96 267492 13 2660 263956 1.00 266616 14 2566 256622 0.99 259188 15 2525 249182 1.00 251707 16 2284 230170 0.98 232454 17 2638 249014 1.05 251652 18 2706 217589 1.23 220295 19 2608 219494 1.17 222102 20 2680 217256 1.22 219936 21 2938 204428 1.42 207366 22 2813 227544 1.22 230357 23 2537 223704 1.12 226241 24 2277 198343 1.13 200620 25 2477 202350 1.21 204827 26 2679 215193 1.23 217872 27 2477 199049 1.23 201526 28 2418 191591 1.25 194009 29 2544 205831 1.22 208375 30 2660 193498 1.36 196158 31 2593 188942 1.35 191535 32 2446 191650 1.26 194096 33 2813 222145 1.25 224958 34 2474 185828 1.31 188302 35 2772 191223 1.43 193995 36 2636 187125 1.39 189761 37 2404 175172 1.35 177576 38 2716 188431 1.42 191147 39 2630 175046 1.48 177676 40 2580 169513 1.50 172093 41 2767 167468 1.63 170235 42 2750 155083 1.74 157833 43 2938 163121 1.77 166059 44 2547 160079 1.57 162626 45 2469 147108 1.65 149577 46 2524 147287 1.68 149811 47 2638 152357 1.70 154995 48 2468 143114 1.70 145582 49 2567 150273 1.68 152840 50 2738 144578 1.86 147316 51 2514 135084 1.83 137598 52 2485 132976 1.83 135461 53 2913 147364 1.94 150277 54 2454 132203 1.82 134657 55 2496 134636 1.82 137132 56 2290 131388 1.71 133678 57 2387 125438 1.87 127825 58 2096 125659 1.64 127755 59 1717 126268 1.34 127985 60 1652 119789 1.36 121441 61 1401 119882 1.16 121283 62 1356 124526 1.08 125882 63 1398 124435 1.11 125833 64 1213 112176 1.07 113389 65 1378 119363 1.14 120741 66 1232 108349 1.12 109581 67 1315 118174 1.10 119489 68 1238 114849 1.07 116087 69 1221 111235 1.09 112456 70 1299 110831 1.16 112130 71 1272 113245 1.11 114517 72 1119 104253 1.06 105372 73 1067 103649 1.02 104716 74 1117 107462 1.03 108579 75 1148 101655 1.12 102803 76 1076 98760 1.08 99836 77 1128 104007 1.07 105135 78 1084 98534 1.09 99618 79 1017 98619 1.02 99636 80 1073 95653 1.11 96726 81 1041 92302 1.12 93343 82 1120 91169 1.21 92289 83 1040 92899 1.11 93939 84 929 88038 1.04 88967 85 1089 97706 1.10 98795 86 1047 89510 1.16 90557 87 1010 88393 1.13 89403 88 972 83868 1.15 84840 89 1069 89942 1.17 91011 90 1023 86263 1.17 87286 91 1046 89735 1.15 90781 92 927 85623 1.07 86550 93 912 81948 1.10 82860 94 886 80426 1.09 81312 95 1016 82291 1.22 83307 96 898 78029 1.14 78927 97 907 78509 1.14 79416 98 835 76518 1.08 77353 99 622 0 100.00 622 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 73974 299557 19.80 373531 2 62881 251940 19.97 314821 3 63761 250475 20.29 314236 4 66140 240265 21.59 306405 5 20509 475618 4.13 496127 6 18929 649926 2.83 668855 7 21024 871203 2.36 892227 8 18919 859329 2.15 878248 9 21385 806550 2.58 827935 10 20253 825521 2.39 845774 11 19088 810021 2.30 829109 12 17849 757116 2.30 774965 13 18319 780419 2.29 798738 14 18707 786233 2.32 804940 15 18380 803833 2.24 822213 16 17395 768562 2.21 785957 17 18339 771728 2.32 790067 18 17466 765764 2.23 783230 19 16057 710656 2.21 726713 20 18574 750456 2.42 769030 21 17282 701247 2.41 718529 22 18099 680851 2.59 698950 23 17489 667096 2.55 684585 24 16124 638543 2.46 654667 25 17589 635413 2.69 653002 26 16509 631694 2.55 648203 27 17211 670013 2.50 687224 28 16578 642646 2.51 659224 29 16735 634087 2.57 650822 30 17332 609320 2.77 626652 31 16495 592653 2.71 609148 32 15910 574507 2.69 590417 33 16839 566490 2.89 583329 34 16250 565389 2.79 581639 35 16638 580494 2.79 597132 36 15441 579141 2.60 594582 37 15668 566581 2.69 582249 38 16325 586329 2.71 602654 39 15880 541964 2.85 557844 40 15643 562129 2.71 577772 41 15888 532676 2.90 548564 42 15544 537662 2.81 553206 43 15583 511431 2.96 527014 44 14437 510359 2.75 524796 45 15023 505278 2.89 520301 46 14316 507892 2.74 522208 47 13920 497354 2.72 511274 48 14259 485461 2.85 499720 49 13700 486941 2.74 500641 50 13593 477500 2.77 491093 51 13620 462995 2.86 476615 52 12887 438832 2.85 451719 53 12646 442106 2.78 454752 54 12147 430876 2.74 443023 55 11993 441226 2.65 453219 56 11858 427705 2.70 439563 57 11493 433128 2.58 444621 58 11000 419708 2.55 430708 59 11185 402393 2.70 413578 60 10186 413072 2.41 423258 61 10402 393805 2.57 404207 62 9763 388941 2.45 398704 63 9562 391559 2.38 401121 64 9962 378099 2.57 388061 65 9536 384170 2.42 393706 66 9249 371969 2.43 381218 67 9178 370457 2.42 379635 68 9167 382527 2.34 391694 69 9344 370761 2.46 380105 70 8745 358600 2.38 367345 71 8842 352975 2.44 361817 72 8977 350823 2.49 359800 73 8778 345267 2.48 354045 74 8448 343768 2.40 352216 75 8392 344284 2.38 352676 76 8164 331908 2.40 340072 77 8657 330144 2.56 338801 78 8372 330940 2.47 339312 79 8400 337051 2.43 345451 80 8198 323885 2.47 332083 81 8362 324665 2.51 333027 82 8072 319312 2.47 327384 83 7754 318019 2.38 325773 84 7944 315578 2.46 323522 85 7638 308270 2.42 315908 86 7509 306737 2.39 314246 87 7378 303992 2.37 311370 88 7118 295147 2.35 302265 89 7292 291437 2.44 298729 90 6943 292217 2.32 299160 91 6920 289931 2.33 296851 92 6713 286451 2.29 293164 93 6780 283160 2.34 289940 94 6522 278118 2.29 284640 95 6688 272850 2.39 279538 96 6320 269337 2.29 275657 97 6105 269370 2.22 275475 98 5555 255612 2.13 261167 99 3817 0 100.00 3817