Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 31922572
Paired-end alignments with a unique best hit 16799762
Pairs without alignments under any condition 9758658
Pairs that did not map uniquely 5364152
Genomic sequence context not extractable (edges of chromosomes) 108427

Cytosine Methylation

Total C's analysed 513958079
Methylated C's in CpG context 16177444
Methylated C's in CHG context 2624561
Methylated C's in CHH context 8986602
Methylated C's in Unknown context 310007
Unmethylated C's in CpG context 61872994
Unmethylated C's in CHG context 111636447
Unmethylated C's in CHH context 312660031
Unmethylated C's in Unknown context 2627088
Percentage methylation (CpG context) 20.7%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 2.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8202154 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8489181 original bottom strand