EPI-159_S6_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6339007 lines in total Total number of methylation call strings processed: 12678014 Final Cytosine Methylation Report ================================= Total number of C's analysed: 141773876 Total methylated C's in CpG context: 5263088 Total methylated C's in CHG context: 901988 Total methylated C's in CHH context: 5990258 Total C to T conversions in CpG context: 13743929 Total C to T conversions in CHG context: 28802830 Total C to T conversions in CHH context: 87071783 C methylated in CpG context: 27.7% C methylated in CHG context: 3.0% C methylated in CHH context: 6.4%