CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 99117 163947 37.68 263064 2 94310 178737 34.54 273047 3 88519 154971 36.35 243490 4 91775 122786 42.77 214561 5 91130 106908 46.02 198038 6 90196 91416 49.66 181612 7 103021 94726 52.10 197747 8 48378 102618 32.04 150996 9 42802 94790 31.11 137592 10 42940 91808 31.87 134748 11 45001 95279 32.08 140280 12 44122 95879 31.52 140001 13 43277 99932 30.22 143209 14 41510 98842 29.58 140352 15 40663 100545 28.80 141208 16 37297 98395 27.49 135692 17 35429 96331 26.89 131760 18 37398 97835 27.65 135233 19 36002 98909 26.69 134911 20 36270 99693 26.68 135963 21 36281 101240 26.38 137521 22 35795 99760 26.41 135555 23 36171 99700 26.62 135871 24 35270 98447 26.38 133717 25 34380 98442 25.88 132822 26 34768 97270 26.33 132038 27 34893 100227 25.82 135120 28 35335 99114 26.28 134449 29 34483 102216 25.23 136699 30 33995 100783 25.22 134778 31 34907 99031 26.06 133938 32 33763 96885 25.84 130648 33 34535 98862 25.89 133397 34 34803 97946 26.22 132749 35 34843 97116 26.40 131959 36 34191 99398 25.59 133589 37 33624 97132 25.72 130756 38 32918 97641 25.21 130559 39 34358 98448 25.87 132806 40 33868 97380 25.80 131248 41 33807 97471 25.75 131278 42 34311 99069 25.72 133380 43 34033 98238 25.73 132271 44 33389 97214 25.57 130603 45 33782 96865 25.86 130647 46 33990 98719 25.61 132709 47 33563 96547 25.80 130110 48 33262 97414 25.45 130676 49 34669 97099 26.31 131768 50 33303 99081 25.16 132384 51 33788 97677 25.70 131465 52 33845 101416 25.02 135261 53 33105 96330 25.58 129435 54 32676 96246 25.35 128922 55 32874 94536 25.80 127410 56 32772 93991 25.85 126763 57 32914 94697 25.79 127611 58 33530 94838 26.12 128368 59 34509 94608 26.73 129117 60 33526 95037 26.08 128563 61 33626 94030 26.34 127656 62 32495 94850 25.52 127345 63 32430 93682 25.72 126112 64 32325 93490 25.69 125815 65 32420 91712 26.12 124132 66 32889 92545 26.22 125434 67 32659 90526 26.51 123185 68 31902 90952 25.97 122854 69 31777 89698 26.16 121475 70 31213 90052 25.74 121265 71 30630 87597 25.91 118227 72 30291 88193 25.57 118484 73 30261 86425 25.93 116686 74 30002 86747 25.70 116749 75 29554 85532 25.68 115086 76 29604 85891 25.63 115495 77 29760 84832 25.97 114592 78 29791 84731 26.01 114522 79 29046 83551 25.80 112597 80 28544 83018 25.59 111562 81 28300 82026 25.65 110326 82 27476 81882 25.12 109358 83 28198 82241 25.53 110439 84 27846 82106 25.33 109952 85 27669 80694 25.53 108363 86 26930 79574 25.29 106504 87 26655 79205 25.18 105860 88 26325 78357 25.15 104682 89 25867 77678 24.98 103545 90 26068 77513 25.17 103581 91 25597 76368 25.10 101965 92 25608 76000 25.20 101608 93 25070 75678 24.88 100748 94 25051 74726 25.11 99777 95 24761 74378 24.98 99139 96 24881 74743 24.97 99624 97 23873 72103 24.87 95976 98 22462 67400 25.00 89862 99 17798 53593 24.93 71391 100 22818 67523 25.26 90341 101 21488 67441 24.16 88929 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 140169 196145 41.68 336314 2 83091 185225 30.97 268316 3 38228 177278 17.74 215506 4 22453 182716 10.94 205169 5 14814 168923 8.06 183737 6 15882 165018 8.78 180900 7 9049 200955 4.31 210004 8 5162 217552 2.32 222714 9 3991 206579 1.90 210570 10 4022 199686 1.97 203708 11 4630 202288 2.24 206918 12 4336 204443 2.08 208779 13 4042 196739 2.01 200781 14 4029 198284 1.99 202313 15 3944 201925 1.92 205869 16 3472 201270 1.70 204742 17 4302 198247 2.12 202549 18 3492 198984 1.72 202476 19 3058 199459 1.51 202517 20 3581 210029 1.68 213610 21 3422 212244 1.59 215666 22 3694 208798 1.74 212492 23 3608 210702 1.68 214310 24 3407 213353 1.57 216760 25 3517 206070 1.68 209587 26 5282 209547 2.46 214829 27 3182 212548 1.47 215730 28 3225 211330 1.50 214555 29 4515 214027 2.07 218542 30 3180 214696 1.46 217876 31 3067 209884 1.44 212951 32 3064 212781 1.42 215845 33 3276 213132 1.51 216408 34 3337 209891 1.56 213228 35 4243 211700 1.96 215943 36 3363 212753 1.56 216116 37 3363 206343 1.60 209706 38 4144 208848 1.95 212992 39 3087 209730 1.45 212817 40 3105 209225 1.46 212330 41 3172 209755 1.49 212927 42 3028 210341 1.42 213369 43 2954 207333 1.40 210287 44 3036 210402 1.42 213438 45 3117 209688 1.46 212805 46 3247 207739 1.54 210986 47 3571 207829 1.69 211400 48 2972 212500 1.38 215472 49 3253 207200 1.55 210453 50 3587 208219 1.69 211806 51 3106 210240 1.46 213346 52 3272 209538 1.54 212810 53 3367 207568 1.60 210935 54 3644 211771 1.69 215415 55 3383 207691 1.60 211074 56 3527 208472 1.66 211999 57 3334 209268 1.57 212602 58 3443 208136 1.63 211579 59 3721 208236 1.76 211957 60 3308 210314 1.55 213622 61 3548 207609 1.68 211157 62 3771 208270 1.78 212041 63 3837 206143 1.83 209980 64 3930 205397 1.88 209327 65 5163 204893 2.46 210056 66 3764 202005 1.83 205769 67 4006 195728 2.01 199734 68 4677 198072 2.31 202749 69 3427 197814 1.70 201241 70 3361 194032 1.70 197393 71 3406 193038 1.73 196444 72 3550 193062 1.81 196612 73 3563 190626 1.83 194189 74 4170 189505 2.15 193675 75 3373 190065 1.74 193438 76 3316 185602 1.76 188918 77 4248 185018 2.24 189266 78 3325 182283 1.79 185608 79 3455 179159 1.89 182614 80 3440 179201 1.88 182641 81 3320 178055 1.83 181375 82 3301 173974 1.86 177275 83 3427 177009 1.90 180436 84 3372 176989 1.87 180361 85 3419 172242 1.95 175661 86 3664 174240 2.06 177904 87 3310 175378 1.85 178688 88 3487 170190 2.01 173677 89 3629 169186 2.10 172815 90 3237 169784 1.87 173021 91 3388 165619 2.00 169007 92 3566 165997 2.10 169563 93 3515 164288 2.09 167803 94 3464 161481 2.10 164945 95 3641 159615 2.23 163256 96 3555 160306 2.17 163861 97 3580 144351 2.42 147931 98 3437 133818 2.50 137255 99 1715 86674 1.94 88389 100 2474 87186 2.76 89660 101 4555 144540 3.06 149095 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 178032 267794 39.93 445826 2 122550 284365 30.12 406915 3 81012 327384 19.84 408396 4 77258 345659 18.27 422917 5 76003 402382 15.89 478385 6 64110 437180 12.79 501290 7 46215 550083 7.75 596298 8 44109 594905 6.90 639014 9 32861 552356 5.62 585217 10 32969 541341 5.74 574310 11 45088 544578 7.65 589666 12 36909 551915 6.27 588824 13 41674 566206 6.86 607880 14 47843 579527 7.63 627370 15 38351 594181 6.06 632532 16 38867 601055 6.07 639922 17 46821 605883 7.17 652704 18 36946 629181 5.55 666127 19 37276 637844 5.52 675120 20 45827 658510 6.51 704337 21 38222 658162 5.49 696384 22 42167 658291 6.02 700458 23 46636 659672 6.60 706308 24 38737 660765 5.54 699502 25 42163 664649 5.97 706812 26 47158 672381 6.55 719539 27 38412 674385 5.39 712797 28 38142 677877 5.33 716019 29 46499 675481 6.44 721980 30 38476 670086 5.43 708562 31 39352 662613 5.61 701965 32 44056 667744 6.19 711800 33 38416 665811 5.46 704227 34 44625 670246 6.24 714871 35 46833 666692 6.56 713525 36 38467 672462 5.41 710929 37 38350 666894 5.44 705244 38 47532 672548 6.60 720080 39 38080 669238 5.38 707318 40 39409 668336 5.57 707745 41 47063 671396 6.55 718459 42 40645 677069 5.66 717714 43 43737 668584 6.14 712321 44 45694 673791 6.35 719485 45 41249 664997 5.84 706246 46 40050 668371 5.65 708421 47 44687 667323 6.28 712010 48 37062 668655 5.25 705717 49 38085 660346 5.45 698431 50 44445 658407 6.32 702852 51 36850 652934 5.34 689784 52 41058 653041 5.92 694099 53 44852 647607 6.48 692459 54 37585 651626 5.45 689211 55 39092 646532 5.70 685624 56 45271 648302 6.53 693573 57 36519 657378 5.26 693897 58 38125 649179 5.55 687304 59 44594 654067 6.38 698661 60 36034 644819 5.29 680853 61 40666 637545 6.00 678211 62 43173 632584 6.39 675757 63 36537 627216 5.50 663753 64 39729 625186 5.98 664915 65 42082 620925 6.35 663007 66 35636 616960 5.46 652596 67 36019 611073 5.57 647092 68 41004 609005 6.31 650009 69 34654 606307 5.41 640961 70 36043 601488 5.65 637531 71 41318 599283 6.45 640601 72 34787 597882 5.50 632669 73 39845 589783 6.33 629628 74 41324 587457 6.57 628781 75 34965 582010 5.67 616975 76 35489 579655 5.77 615144 77 41736 574386 6.77 616122 78 32852 570362 5.45 603214 79 34660 564859 5.78 599519 80 40591 561160 6.75 601751 81 35180 555022 5.96 590202 82 37276 548702 6.36 585978 83 40004 549468 6.79 589472 84 35191 542475 6.09 577666 85 34496 532172 6.09 566668 86 38013 531500 6.67 569513 87 31698 527504 5.67 559202 88 32587 521596 5.88 554183 89 38068 517784 6.85 555852 90 31848 514929 5.82 546777 91 33359 508596 6.16 541955 92 36139 509096 6.63 545235 93 31321 501064 5.88 532385 94 31385 497665 5.93 529050 95 36031 490221 6.85 526252 96 29304 481039 5.74 510343 97 29393 468441 5.90 497834 98 32795 436767 6.98 469562 99 17562 304826 5.45 322388 100 20055 269694 6.92 289749 101 30677 442912 6.48 473589 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 81559 93336 46.63 174895 2 70840 82402 46.23 153242 3 76579 90677 45.79 167256 4 68823 101362 40.44 170185 5 30820 131727 18.96 162547 6 19171 72013 21.02 91184 7 16720 78213 17.61 94933 8 17545 73990 19.17 91535 9 15498 63161 19.70 78659 10 17175 69794 19.75 86969 11 17994 68558 20.79 86552 12 17119 65922 20.62 83041 13 17700 63752 21.73 81452 14 18528 64907 22.21 83435 15 17936 58788 23.38 76724 16 16915 56800 22.95 73715 17 20689 62008 25.02 82697 18 19155 58449 24.68 77604 19 18549 57983 24.24 76532 20 17441 56615 23.55 74056 21 18314 54770 25.06 73084 22 18436 57094 24.41 75530 23 17246 54156 24.15 71402 24 16628 52854 23.93 69482 25 17891 54566 24.69 72457 26 16917 52302 24.44 69219 27 17948 52933 25.32 70881 28 16423 49896 24.76 66319 29 17061 52250 24.62 69311 30 16441 48866 25.17 65307 31 15530 50553 23.50 66083 32 15197 47678 24.17 62875 33 17025 47680 26.31 64705 34 16455 49467 24.96 65922 35 19787 51827 27.63 71614 36 16293 46972 25.75 63265 37 16849 48586 25.75 65435 38 15405 46753 24.78 62158 39 15681 45337 25.70 61018 40 17019 45931 27.04 62950 41 15309 44958 25.40 60267 42 15208 45736 24.95 60944 43 14859 44761 24.92 59620 44 14078 43525 24.44 57603 45 17564 46891 27.25 64455 46 14007 40683 25.61 54690 47 13907 41776 24.98 55683 48 14237 41266 25.65 55503 49 13579 43252 23.89 56831 50 12760 38985 24.66 51745 51 12686 38710 24.68 51396 52 13348 39757 25.14 53105 53 13340 38278 25.84 51618 54 13007 37785 25.61 50792 55 13027 36653 26.22 49680 56 12070 36438 24.88 48508 57 12650 36269 25.86 48919 58 11990 36437 24.76 48427 59 11399 33605 25.33 45004 60 12046 34018 26.15 46064 61 10668 34076 23.84 44744 62 10739 31943 25.16 42682 63 11590 31997 26.59 43587 64 10874 32614 25.00 43488 65 10790 30757 25.97 41547 66 11352 31862 26.27 43214 67 10378 31806 24.60 42184 68 11365 32333 26.01 43698 69 10389 31147 25.01 41536 70 10034 30455 24.78 40489 71 10619 27731 27.69 38350 72 9711 27621 26.01 37332 73 9555 28517 25.10 38072 74 9004 27576 24.61 36580 75 9061 27969 24.47 37030 76 9232 26533 25.81 35765 77 9072 26690 25.37 35762 78 9143 26904 25.36 36047 79 8651 25438 25.38 34089 80 8497 25025 25.35 33522 81 8470 25302 25.08 33772 82 8373 25299 24.87 33672 83 8486 23818 26.27 32304 84 9272 25565 26.62 34837 85 8140 24629 24.84 32769 86 8129 23890 25.39 32019 87 7996 23528 25.36 31524 88 7742 23429 24.84 31171 89 8391 23195 26.57 31586 90 8359 23358 26.35 31717 91 7583 22394 25.30 29977 92 7401 22280 24.94 29681 93 7572 22328 25.32 29900 94 7727 21768 26.20 29495 95 7645 21786 25.98 29431 96 7401 21404 25.69 28805 97 8055 22164 26.66 30219 98 7028 20326 25.69 27354 99 6275 0 100.00 6275 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25270 121184 17.25 146454 2 25849 126095 17.01 151944 3 24602 125414 16.40 150016 4 25963 133566 16.27 159529 5 4018 241511 1.64 245529 6 2863 299244 0.95 302107 7 1896 165878 1.13 167774 8 1974 180326 1.08 182300 9 1888 149880 1.24 151768 10 1864 143609 1.28 145473 11 2819 190402 1.46 193221 12 2004 151207 1.31 153211 13 1948 151242 1.27 153190 14 2066 145826 1.40 147892 15 2026 140146 1.43 142172 16 1869 130525 1.41 132394 17 1947 139807 1.37 141754 18 2624 123349 2.08 125973 19 1906 123506 1.52 125412 20 1925 122187 1.55 124112 21 2927 115520 2.47 118447 22 1970 128339 1.51 130309 23 1862 125946 1.46 127808 24 1670 112903 1.46 114573 25 1757 115360 1.50 117117 26 1954 122033 1.58 123987 27 1740 113108 1.52 114848 28 1653 107792 1.51 109445 29 1857 116204 1.57 118061 30 1833 109657 1.64 111490 31 1563 106914 1.44 108477 32 1646 108972 1.49 110618 33 1798 125564 1.41 127362 34 1647 106455 1.52 108102 35 1736 108477 1.58 110213 36 1658 107849 1.51 109507 37 1536 100606 1.50 102142 38 1823 106758 1.68 108581 39 1721 101087 1.67 102808 40 1620 98392 1.62 100012 41 1771 94847 1.83 96618 42 1803 88957 1.99 90760 43 1854 93930 1.94 95784 44 1623 93305 1.71 94928 45 1528 84928 1.77 86456 46 1549 85783 1.77 87332 47 1727 88397 1.92 90124 48 1640 83952 1.92 85592 49 1633 86875 1.85 88508 50 1781 84309 2.07 86090 51 1653 79089 2.05 80742 52 1706 78604 2.12 80310 53 1920 86919 2.16 88839 54 1627 80060 1.99 81687 55 1560 80709 1.90 82269 56 1508 79162 1.87 80670 57 2103 75914 2.70 78017 58 1485 76322 1.91 77807 59 1356 75864 1.76 77220 60 1566 72328 2.12 73894 61 1124 72428 1.53 73552 62 1205 75458 1.57 76663 63 1076 75630 1.40 76706 64 1033 68369 1.49 69402 65 1151 73033 1.55 74184 66 1048 65769 1.57 66817 67 1077 72076 1.47 73153 68 1050 70508 1.47 71558 69 1033 67159 1.51 68192 70 962 67100 1.41 68062 71 917 68351 1.32 69268 72 940 63075 1.47 64015 73 878 63097 1.37 63975 74 881 65388 1.33 66269 75 883 61613 1.41 62496 76 866 60397 1.41 61263 77 970 63691 1.50 64661 78 871 60758 1.41 61629 79 870 60142 1.43 61012 80 867 58478 1.46 59345 81 940 55756 1.66 56696 82 881 55321 1.57 56202 83 892 56570 1.55 57462 84 828 53616 1.52 54444 85 843 59936 1.39 60779 86 873 54110 1.59 54983 87 885 53812 1.62 54697 88 891 51318 1.71 52209 89 976 55097 1.74 56073 90 964 53791 1.76 54755 91 886 54240 1.61 55126 92 797 52424 1.50 53221 93 787 49700 1.56 50487 94 835 49430 1.66 50265 95 836 49801 1.65 50637 96 1026 48216 2.08 49242 97 773 47887 1.59 48660 98 744 46160 1.59 46904 99 688 0 100.00 688 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 57968 172269 25.18 230237 2 53221 144246 26.95 197467 3 55680 141904 28.18 197584 4 57172 135225 29.72 192397 5 23404 268899 8.01 292303 6 23558 369805 5.99 393363 7 24646 496515 4.73 521161 8 22033 490583 4.30 512616 9 25433 463356 5.20 488789 10 23808 473082 4.79 496890 11 23170 465376 4.74 488546 12 21587 434818 4.73 456405 13 21704 449720 4.60 471424 14 21998 451074 4.65 473072 15 20578 461754 4.27 482332 16 19732 440469 4.29 460201 17 20712 440075 4.49 460787 18 19663 438536 4.29 458199 19 18839 408890 4.40 427729 20 21413 432015 4.72 453428 21 19860 402807 4.70 422667 22 21750 392493 5.25 414243 23 20525 386392 5.04 406917 24 18598 369613 4.79 388211 25 21299 369987 5.44 391286 26 19132 366587 4.96 385719 27 19669 388418 4.82 408087 28 19113 371445 4.89 390558 29 19194 366707 4.97 385901 30 20478 353760 5.47 374238 31 19548 345473 5.36 365021 32 18501 335909 5.22 354410 33 20273 330557 5.78 350830 34 18960 329831 5.44 348791 35 19028 339959 5.30 358987 36 17746 339078 4.97 356824 37 17903 331923 5.12 349826 38 18979 344787 5.22 363766 39 18816 319406 5.56 338222 40 18449 332076 5.26 350525 41 18898 314655 5.67 333553 42 18652 319079 5.52 337731 43 18780 301855 5.86 320635 44 16894 303584 5.27 320478 45 17629 302048 5.51 319677 46 16959 303795 5.29 320754 47 16300 298496 5.18 314796 48 16973 290777 5.52 307750 49 16209 293819 5.23 310028 50 16565 288066 5.44 304631 51 16596 280266 5.59 296862 52 15656 266178 5.56 281834 53 15362 267784 5.43 283146 54 14691 261399 5.32 276090 55 14437 267516 5.12 281953 56 14785 260718 5.37 275503 57 14207 263762 5.11 277969 58 13584 256171 5.04 269755 59 14315 248394 5.45 262709 60 13507 253694 5.05 267201 61 14605 241939 5.69 256544 62 13595 238583 5.39 252178 63 12855 239588 5.09 252443 64 13844 232830 5.61 246674 65 12664 234664 5.12 247328 66 12808 227672 5.33 240480 67 12366 226501 5.18 238867 68 12153 234902 4.92 247055 69 12798 227185 5.33 239983 70 12505 220519 5.37 233024 71 11865 216333 5.20 228198 72 12673 215182 5.56 227855 73 12421 211490 5.55 223911 74 11529 212563 5.14 224092 75 11564 211719 5.18 223283 76 11082 203607 5.16 214689 77 12102 203103 5.62 215205 78 11701 204925 5.40 216626 79 11329 207317 5.18 218646 80 11883 200046 5.61 211929 81 11884 200834 5.59 212718 82 11536 197481 5.52 209017 83 10856 195463 5.26 206319 84 11278 194045 5.49 205323 85 10540 190703 5.24 201243 86 10514 190337 5.23 200851 87 10375 187000 5.26 197375 88 10082 182242 5.24 192324 89 10295 180385 5.40 190680 90 10355 181963 5.38 192318 91 9919 179095 5.25 189014 92 9606 178176 5.12 187782 93 9492 175312 5.14 184804 94 9097 171101 5.05 180198 95 9367 168803 5.26 178170 96 8820 167165 5.01 175985 97 8458 167368 4.81 175826 98 8100 158082 4.87 166182 99 5561 0 100.00 5561