Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-159_S6_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-159_S6_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 15453987
Paired-end alignments with a unique best hit 9136462
Pairs without alignments under any condition 3665126
Pairs that did not map uniquely 2652399
Genomic sequence context not extractable (edges of chromosomes) 55159

Cytosine Methylation

Total C's analysed 289174054
Methylated C's in CpG context 9492162
Methylated C's in CHG context 1624273
Methylated C's in CHH context 9702386
Methylated C's in Unknown context 300927
Unmethylated C's in CpG context 31891715
Unmethylated C's in CHG context 60744506
Unmethylated C's in CHH context 175719012
Unmethylated C's in Unknown context 1466391
Percentage methylation (CpG context) 22.9%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 5.2%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4472321 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 4608982 original bottom strand