EPI-154_S5_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9176066 lines in total Total number of methylation call strings processed: 18352132 Final Cytosine Methylation Report ================================= Total number of C's analysed: 199949327 Total methylated C's in CpG context: 7378911 Total methylated C's in CHG context: 1045578 Total methylated C's in CHH context: 4525832 Total C to T conversions in CpG context: 20067707 Total C to T conversions in CHG context: 41845846 Total C to T conversions in CHH context: 125085453 C methylated in CpG context: 26.9% C methylated in CHG context: 2.4% C methylated in CHH context: 3.5%