CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 128249 198581 39.24 326830 2 119517 218960 35.31 338477 3 118223 200924 37.04 319147 4 126734 176244 41.83 302978 5 123369 154201 44.45 277570 6 121097 131176 48.00 252273 7 133793 130866 50.55 264659 8 66708 148633 30.98 215341 9 59720 137670 30.25 197390 10 60451 136409 30.71 196860 11 63205 140301 31.06 203506 12 61590 140226 30.52 201816 13 60717 142840 29.83 203557 14 58340 144019 28.83 202359 15 57273 145462 28.25 202735 16 53335 144501 26.96 197836 17 51452 140807 26.76 192259 18 52558 144228 26.71 196786 19 51463 143941 26.34 195404 20 51553 146783 25.99 198336 21 51451 147013 25.92 198464 22 50969 144408 26.09 195377 23 50465 144262 25.92 194727 24 49644 145692 25.41 195336 25 49036 144535 25.33 193571 26 49386 143047 25.66 192433 27 48871 146171 25.06 195042 28 49736 147323 25.24 197059 29 48906 145885 25.11 194791 30 48248 146217 24.81 194465 31 49298 145125 25.36 194423 32 48224 143108 25.20 191332 33 48932 144616 25.28 193548 34 49425 145069 25.41 194494 35 49117 144293 25.40 193410 36 48543 147016 24.82 195559 37 47833 142998 25.07 190831 38 47119 143050 24.78 190169 39 48336 143618 25.18 191954 40 47269 143371 24.79 190640 41 47296 142122 24.97 189418 42 48223 145662 24.87 193885 43 47644 143608 24.91 191252 44 47218 143816 24.72 191034 45 48112 143215 25.15 191327 46 48401 144543 25.09 192944 47 47303 141858 25.01 189161 48 47129 142878 24.80 190007 49 49100 142944 25.57 192044 50 47164 143836 24.69 191000 51 47645 143333 24.95 190978 52 48199 145453 24.89 193652 53 47058 142040 24.89 189098 54 46534 141192 24.79 187726 55 46238 139449 24.90 185687 56 46474 138999 25.06 185473 57 47046 141221 24.99 188267 58 47312 140664 25.17 187976 59 47897 139509 25.56 187406 60 47206 140195 25.19 187401 61 48552 139057 25.88 187609 62 46845 138725 25.24 185570 63 46278 138727 25.01 185005 64 46065 137872 25.04 183937 65 46532 137097 25.34 183629 66 46871 136148 25.61 183019 67 46298 134471 25.61 180769 68 45645 134284 25.37 179929 69 45750 133259 25.56 179009 70 44693 133710 25.05 178403 71 44323 129944 25.43 174267 72 43922 129580 25.31 173502 73 43488 128573 25.27 172061 74 43253 128283 25.22 171536 75 41916 128481 24.60 170397 76 41944 127670 24.73 169614 77 42159 125242 25.18 167401 78 42140 126276 25.02 168416 79 41528 123964 25.09 165492 80 40711 123350 24.81 164061 81 40477 121996 24.91 162473 82 39658 121322 24.64 160980 83 40156 121718 24.81 161874 84 39575 120369 24.74 159944 85 39506 118393 25.02 157899 86 38383 117383 24.64 155766 87 37682 115689 24.57 153371 88 37643 115858 24.52 153501 89 37131 113834 24.60 150965 90 36712 114093 24.34 150805 91 36478 112233 24.53 148711 92 35630 111792 24.17 147422 93 35617 111219 24.26 146836 94 35467 110525 24.29 145992 95 34718 108813 24.19 143531 96 34726 108802 24.19 143528 97 33389 105495 24.04 138884 98 31973 99133 24.39 131106 99 24938 77851 24.26 102789 100 32416 98860 24.69 131276 101 29513 98222 23.10 127735 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 158559 297827 34.74 456386 2 93635 287190 24.59 380825 3 45434 276171 14.13 321605 4 27465 279746 8.94 307211 5 17906 252055 6.63 269961 6 16200 242603 6.26 258803 7 11047 294815 3.61 305862 8 5780 315206 1.80 320986 9 4766 302128 1.55 306894 10 4730 293559 1.59 298289 11 5112 295627 1.70 300739 12 5026 298279 1.66 303305 13 4812 289934 1.63 294746 14 4512 289674 1.53 294186 15 4462 295971 1.49 300433 16 4031 295624 1.35 299655 17 4889 290042 1.66 294931 18 4291 291359 1.45 295650 19 3575 291314 1.21 294889 20 3827 304808 1.24 308635 21 3737 307975 1.20 311712 22 4036 301554 1.32 305590 23 4132 308601 1.32 312733 24 3881 312798 1.23 316679 25 3915 302803 1.28 306718 26 4844 305018 1.56 309862 27 3863 311668 1.22 315531 28 3684 309214 1.18 312898 29 4407 311024 1.40 315431 30 3532 313952 1.11 317484 31 3626 306734 1.17 310360 32 3597 311729 1.14 315326 33 3656 312996 1.15 316652 34 3663 307481 1.18 311144 35 4303 308841 1.37 313144 36 3631 312302 1.15 315933 37 3801 302897 1.24 306698 38 4115 308316 1.32 312431 39 3590 306431 1.16 310021 40 3738 306195 1.21 309933 41 3646 305328 1.18 308974 42 3496 308647 1.12 312143 43 3545 302707 1.16 306252 44 3488 307556 1.12 311044 45 3551 307999 1.14 311550 46 3445 304583 1.12 308028 47 3914 305169 1.27 309083 48 3548 311702 1.13 315250 49 3693 303565 1.20 307258 50 3898 302937 1.27 306835 51 3678 307197 1.18 310875 52 3745 306978 1.21 310723 53 3814 303573 1.24 307387 54 3898 309543 1.24 313441 55 3863 304126 1.25 307989 56 3916 306233 1.26 310149 57 3960 306752 1.27 310712 58 4059 303663 1.32 307722 59 4190 304240 1.36 308430 60 4017 307688 1.29 311705 61 4275 302326 1.39 306601 62 4313 301600 1.41 305913 63 4458 301076 1.46 305534 64 4581 297809 1.51 302390 65 5247 296549 1.74 301796 66 4424 294072 1.48 298496 67 4403 287303 1.51 291706 68 4880 289323 1.66 294203 69 4266 288605 1.46 292871 70 4154 281212 1.46 285366 71 4106 281066 1.44 285172 72 4117 282868 1.43 286985 73 4203 277569 1.49 281772 74 4473 276844 1.59 281317 75 4057 276182 1.45 280239 76 4012 269336 1.47 273348 77 4586 268683 1.68 273269 78 3962 267010 1.46 270972 79 4133 261922 1.55 266055 80 4074 261102 1.54 265176 81 4054 259307 1.54 263361 82 4043 252296 1.58 256339 83 4187 256378 1.61 260565 84 4135 256148 1.59 260283 85 4355 250896 1.71 255251 86 4212 250466 1.65 254678 87 3970 252072 1.55 256042 88 4203 245448 1.68 249651 89 4190 244048 1.69 248238 90 4058 244263 1.63 248321 91 4041 239352 1.66 243393 92 4310 240218 1.76 244528 93 4360 237980 1.80 242340 94 4297 231801 1.82 236098 95 4265 230564 1.82 234829 96 4307 229075 1.85 233382 97 4037 210236 1.88 214273 98 3979 191891 2.03 195870 99 2316 124871 1.82 127187 100 2849 127071 2.19 129920 101 5433 207168 2.56 212601 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 233416 432538 35.05 665954 2 135181 464305 22.55 599486 3 79874 500980 13.75 580854 4 71340 539357 11.68 610697 5 67181 610535 9.91 677716 6 55776 662153 7.77 717929 7 41562 817905 4.84 859467 8 33166 875125 3.65 908291 9 25459 814952 3.03 840411 10 25286 794043 3.09 819329 11 32845 797159 3.96 830004 12 28094 803147 3.38 831241 13 30803 815696 3.64 846499 14 34156 836689 3.92 870845 15 28582 854237 3.24 882819 16 27763 863658 3.11 891421 17 32782 872224 3.62 905006 18 27366 902412 2.94 929778 19 27314 915224 2.90 942538 20 32309 942804 3.31 975113 21 27633 944983 2.84 972616 22 30428 947959 3.11 978387 23 32966 947993 3.36 980959 24 27820 952960 2.84 980780 25 29958 955634 3.04 985592 26 33109 965195 3.32 998304 27 28174 968344 2.83 996518 28 27984 974752 2.79 1002736 29 32819 975674 3.25 1008493 30 27654 967567 2.78 995221 31 28460 959564 2.88 988024 32 31008 962804 3.12 993812 33 27617 964332 2.78 991949 34 31318 969020 3.13 1000338 35 32722 961992 3.29 994714 36 27971 971092 2.80 999063 37 28475 960824 2.88 989299 38 33004 970268 3.29 1003272 39 27845 964533 2.81 992378 40 28447 962321 2.87 990768 41 32922 966421 3.29 999343 42 28758 970784 2.88 999542 43 30836 964453 3.10 995289 44 31904 970689 3.18 1002593 45 29461 961788 2.97 991249 46 28970 964779 2.92 993749 47 31412 963466 3.16 994878 48 26626 965148 2.68 991774 49 27192 958826 2.76 986018 50 31402 955172 3.18 986574 51 26826 948843 2.75 975669 52 29233 946533 3.00 975766 53 31291 940171 3.22 971462 54 27086 943048 2.79 970134 55 27985 935971 2.90 963956 56 31424 934748 3.25 966172 57 26525 940877 2.74 967402 58 27366 937854 2.84 965220 59 31425 941563 3.23 972988 60 26280 931330 2.74 957610 61 28747 923249 3.02 951996 62 30347 911922 3.22 942269 63 26584 908488 2.84 935072 64 28272 900996 3.04 929268 65 29248 899189 3.15 928437 66 26024 891202 2.84 917226 67 26131 883325 2.87 909456 68 28354 878929 3.13 907283 69 25280 876670 2.80 901950 70 25816 869244 2.88 895060 71 28787 865682 3.22 894469 72 25339 864743 2.85 890082 73 27912 851340 3.17 879252 74 28784 848002 3.28 876786 75 24761 841338 2.86 866099 76 25359 837165 2.94 862524 77 28648 826843 3.35 855491 78 23615 822210 2.79 845825 79 24621 814927 2.93 839548 80 27773 810433 3.31 838206 81 24697 798495 3.00 823192 82 26047 793204 3.18 819251 83 27727 791197 3.39 818924 84 24357 781962 3.02 806319 85 24437 768362 3.08 792799 86 25960 761118 3.30 787078 87 22417 756199 2.88 778616 88 23158 748158 3.00 771316 89 25733 739728 3.36 765461 90 22388 737405 2.95 759793 91 23347 728104 3.11 751451 92 24898 724420 3.32 749318 93 21946 719308 2.96 741254 94 22403 710898 3.06 733301 95 24644 701401 3.39 726045 96 21021 689677 2.96 710698 97 21154 669833 3.06 690987 98 22351 624236 3.46 646587 99 13179 436103 2.93 449282 100 14205 388454 3.53 402659 101 21639 628931 3.33 650570 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 120114 142299 45.77 262413 2 103545 123552 45.60 227097 3 110909 136468 44.83 247377 4 100836 153771 39.60 254607 5 44207 198099 18.24 242306 6 27153 107281 20.20 134434 7 24051 114183 17.40 138234 8 24867 108408 18.66 133275 9 21899 92491 19.14 114390 10 23895 102521 18.90 126416 11 25520 100469 20.26 125989 12 24261 96116 20.15 120377 13 24824 92569 21.15 117393 14 25765 96383 21.09 122148 15 25783 86763 22.91 112546 16 24141 84085 22.31 108226 17 29169 90579 24.36 119748 18 28149 87632 24.31 115781 19 26463 86009 23.53 112472 20 24744 82816 23.00 107560 21 25710 79933 24.34 105643 22 25252 83360 23.25 108612 23 24063 79545 23.23 103608 24 23004 77169 22.96 100173 25 24976 79463 23.91 104439 26 23438 76433 23.47 99871 27 25197 77263 24.59 102460 28 22677 72795 23.75 95472 29 23737 75852 23.83 99589 30 22658 70889 24.22 93547 31 21820 73094 22.99 94914 32 21252 69657 23.38 90909 33 23771 69580 25.46 93351 34 22444 72859 23.55 95303 35 27570 77280 26.29 104850 36 22634 68717 24.78 91351 37 23395 70939 24.80 94334 38 21612 67917 24.14 89529 39 22006 66641 24.82 88647 40 23794 66956 26.22 90750 41 20642 65661 23.92 86303 42 20808 67739 23.50 88547 43 20886 65735 24.11 86621 44 19792 63062 23.89 82854 45 23835 69195 25.62 93030 46 19348 60216 24.32 79564 47 19459 61696 23.98 81155 48 19479 61181 24.15 80660 49 18806 63273 22.91 82079 50 18188 56783 24.26 74971 51 17671 55830 24.04 73501 52 18540 57551 24.37 76091 53 18312 56182 24.58 74494 54 17794 56302 24.01 74096 55 18343 54055 25.34 72398 56 16659 53523 23.74 70182 57 17278 53107 24.55 70385 58 16877 53439 24.00 70316 59 16082 49690 24.45 65772 60 16630 49960 24.97 66590 61 14937 49708 23.11 64645 62 14989 46938 24.20 61927 63 15886 46793 25.35 62679 64 15209 46937 24.47 62146 65 14611 44347 24.78 58958 66 15580 46682 25.02 62262 67 14644 46934 23.78 61578 68 15847 48243 24.73 64090 69 14299 44707 24.23 59006 70 13873 43953 23.99 57826 71 14096 41098 25.54 55194 72 13377 39974 25.07 53351 73 13346 41134 24.50 54480 74 12214 40426 23.20 52640 75 12517 40526 23.60 53043 76 12746 38609 24.82 51355 77 12297 38924 24.01 51221 78 12249 38492 24.14 50741 79 11905 37196 24.25 49101 80 11531 36838 23.84 48369 81 11650 36882 24.00 48532 82 11579 36631 24.02 48210 83 11684 34747 25.16 46431 84 13058 37817 25.67 50875 85 11138 35366 23.95 46504 86 11002 34647 24.10 45649 87 11017 34222 24.35 45239 88 10552 34009 23.68 44561 89 11437 34343 24.98 45780 90 11219 34356 24.62 45575 91 10518 32769 24.30 43287 92 10308 32467 24.10 42775 93 10233 32313 24.05 42546 94 10503 32406 24.48 42909 95 10496 31446 25.03 41942 96 9980 31114 24.29 41094 97 11018 32889 25.09 43907 98 9814 29369 25.05 39183 99 8763 0 100.00 8763 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35293 175703 16.73 210996 2 36483 182484 16.66 218967 3 33636 183874 15.46 217510 4 35917 194211 15.61 230128 5 4717 353203 1.32 357920 6 3399 435084 0.78 438483 7 2135 241020 0.88 243155 8 2186 259771 0.83 261957 9 2008 215402 0.92 217410 10 2017 206303 0.97 208320 11 2919 275925 1.05 278844 12 2124 217593 0.97 219717 13 2177 217538 0.99 219715 14 2150 209483 1.02 211633 15 2098 201841 1.03 203939 16 1840 187110 0.97 188950 17 2199 201307 1.08 203506 18 2388 177090 1.33 179478 19 1986 178324 1.10 180310 20 1943 176621 1.09 178564 21 2358 166388 1.40 168746 22 2173 184789 1.16 186962 23 2045 182836 1.11 184881 24 1808 162379 1.10 164187 25 1912 166195 1.14 168107 26 2044 175508 1.15 177552 27 1930 162223 1.18 164153 28 1843 155327 1.17 157170 29 1986 169093 1.16 171079 30 1850 157794 1.16 159644 31 1859 152463 1.20 154322 32 1733 157307 1.09 159040 33 1967 181214 1.07 183181 34 1744 151449 1.14 153193 35 1801 157031 1.13 158832 36 1811 154144 1.16 155955 37 1646 144249 1.13 145895 38 1943 154765 1.24 156708 39 1818 145997 1.23 147815 40 1819 140489 1.28 142308 41 1797 137419 1.29 139216 42 1797 127833 1.39 129630 43 1841 134124 1.35 135965 44 1779 133477 1.32 135256 45 1643 121689 1.33 123332 46 1637 122052 1.32 123689 47 1861 126903 1.45 128764 48 1722 120096 1.41 121818 49 1786 125765 1.40 127551 50 1780 121116 1.45 122896 51 1734 113763 1.50 115497 52 1751 111396 1.55 113147 53 2023 124919 1.59 126942 54 1730 112808 1.51 114538 55 1674 114206 1.44 115880 56 1617 112151 1.42 113768 57 1925 106984 1.77 108909 58 1687 108433 1.53 110120 59 1426 108219 1.30 109645 60 1424 103468 1.36 104892 61 1213 101994 1.18 103207 62 1257 107169 1.16 108426 63 1280 108398 1.17 109678 64 1105 96187 1.14 97292 65 1099 103244 1.05 104343 66 1056 93120 1.12 94176 67 1051 102298 1.02 103349 68 1084 99611 1.08 100695 69 1174 95216 1.22 96390 70 1062 95432 1.10 96494 71 1027 98234 1.03 99261 72 997 88398 1.12 89395 73 970 89830 1.07 90800 74 1026 92310 1.10 93336 75 985 86891 1.12 87876 76 920 85095 1.07 86015 77 941 91102 1.02 92043 78 921 86314 1.06 87235 79 976 84479 1.14 85455 80 948 82589 1.13 83537 81 1018 79409 1.27 80427 82 897 77839 1.14 78736 83 923 79773 1.14 80696 84 904 76221 1.17 77125 85 901 85311 1.05 86212 86 905 76862 1.16 77767 87 893 76210 1.16 77103 88 851 72476 1.16 73327 89 989 77647 1.26 78636 90 928 75503 1.21 76431 91 941 77964 1.19 78905 92 871 74914 1.15 75785 93 847 71176 1.18 72023 94 828 69382 1.18 70210 95 868 71116 1.21 71984 96 922 67499 1.35 68421 97 820 67559 1.20 68379 98 746 66073 1.12 66819 99 596 0 100.00 596 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 59254 242622 19.63 301876 2 50589 201039 20.10 251628 3 51706 200100 20.53 251806 4 52306 191999 21.41 244305 5 17816 380385 4.47 398201 6 16352 523122 3.03 539474 7 17429 705984 2.41 723413 8 15928 699468 2.23 715396 9 18129 656733 2.69 674862 10 16981 670813 2.47 687794 11 16412 659293 2.43 675705 12 15320 614201 2.43 629521 13 15129 634868 2.33 649997 14 15979 638561 2.44 654540 15 15418 654279 2.30 669697 16 14179 625299 2.22 639478 17 15262 625439 2.38 640701 18 14479 622896 2.27 637375 19 13232 580821 2.23 594053 20 15250 617189 2.41 632439 21 14221 573968 2.42 588189 22 14771 556215 2.59 570986 23 14728 548395 2.62 563123 24 13360 526164 2.48 539524 25 14519 524504 2.69 539023 26 13893 519519 2.60 533412 27 14199 551508 2.51 565707 28 13874 530652 2.55 544526 29 13585 522916 2.53 536501 30 13988 503849 2.70 517837 31 13756 491932 2.72 505688 32 13197 477703 2.69 490900 33 14156 470592 2.92 484748 34 13433 469581 2.78 483014 35 14015 484199 2.81 498214 36 12902 482139 2.61 495041 37 12562 471947 2.59 484509 38 13591 490829 2.69 504420 39 13018 452971 2.79 465989 40 12663 471608 2.61 484271 41 13215 446425 2.88 459640 42 12790 456297 2.73 469087 43 12908 430241 2.91 443149 44 12038 428537 2.73 440575 45 12444 428516 2.82 440960 46 12044 432133 2.71 444177 47 11613 422706 2.67 434319 48 11949 411809 2.82 423758 49 11417 416365 2.67 427782 50 11528 409538 2.74 421066 51 11420 396384 2.80 407804 52 10761 375591 2.79 386352 53 10861 378689 2.79 389550 54 10310 368361 2.72 378671 55 10371 379035 2.66 389406 56 10222 369288 2.69 379510 57 9989 373516 2.60 383505 58 9514 363114 2.55 372628 59 9820 349635 2.73 359455 60 9326 356786 2.55 366112 61 9603 340484 2.74 350087 62 9150 336088 2.65 345238 63 8662 339194 2.49 347856 64 9003 328124 2.67 337127 65 8754 331718 2.57 340472 66 8675 321067 2.63 329742 67 8401 319266 2.56 327667 68 8601 330285 2.54 338886 69 8555 320662 2.60 329217 70 8112 310628 2.55 318740 71 8066 305747 2.57 313813 72 8469 303663 2.71 312132 73 8295 298193 2.71 306488 74 7836 298635 2.56 306471 75 7863 298574 2.57 306437 76 7408 286226 2.52 293634 77 8054 286313 2.74 294367 78 7765 287561 2.63 295326 79 7630 291326 2.55 298956 80 7628 281431 2.64 289059 81 7768 281858 2.68 289626 82 7755 276778 2.73 284533 83 7217 274776 2.56 281993 84 7515 274021 2.67 281536 85 7247 266829 2.64 274076 86 7046 266334 2.58 273380 87 7021 262996 2.60 270017 88 6943 255478 2.65 262421 89 6814 253402 2.62 260216 90 6758 254317 2.59 261075 91 6365 252001 2.46 258366 92 6425 248984 2.52 255409 93 6410 244976 2.55 251386 94 6093 242005 2.46 248098 95 6319 236930 2.60 243249 96 6034 233874 2.52 239908 97 5684 234001 2.37 239685 98 5288 222932 2.32 228220 99 3778 0 100.00 3778