Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-154_S5_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-154_S5_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 25226760
Paired-end alignments with a unique best hit 13360925
Pairs without alignments under any condition 8094344
Pairs that did not map uniquely 3771491
Genomic sequence context not extractable (edges of chromosomes) 93503

Cytosine Methylation

Total C's analysed 413506932
Methylated C's in CpG context 13656372
Methylated C's in CHG context 1952250
Methylated C's in CHH context 7600997
Methylated C's in Unknown context 251883
Unmethylated C's in CpG context 45332971
Unmethylated C's in CHG context 89625550
Unmethylated C's in CHH context 255338792
Unmethylated C's in Unknown context 2060069
Percentage methylation (CpG context) 23.2%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 2.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6574575 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6692847 original bottom strand