EPI-153_S4_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9082457 lines in total Total number of methylation call strings processed: 18164914 Final Cytosine Methylation Report ================================= Total number of C's analysed: 192380687 Total methylated C's in CpG context: 7109547 Total methylated C's in CHG context: 1052940 Total methylated C's in CHH context: 3712462 Total C to T conversions in CpG context: 19918475 Total C to T conversions in CHG context: 41381397 Total C to T conversions in CHH context: 119205866 C methylated in CpG context: 26.3% C methylated in CHG context: 2.5% C methylated in CHH context: 3.0%