CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 123326 214589 36.50 337915 2 119120 237072 33.44 356192 3 116860 211460 35.59 328320 4 125549 176973 41.50 302522 5 121549 151816 44.46 273365 6 123205 132584 48.17 255789 7 137834 131008 51.27 268842 8 67611 147174 31.48 214785 9 61101 139042 30.53 200143 10 60621 136620 30.73 197241 11 63650 141232 31.07 204882 12 61369 143272 29.99 204641 13 60734 146790 29.27 207524 14 58278 147856 28.27 206134 15 56994 149679 27.58 206673 16 52283 148051 26.10 200334 17 50509 145704 25.74 196213 18 51298 149220 25.58 200518 19 49905 148433 25.16 198338 20 50662 150768 25.15 201430 21 50377 152550 24.83 202927 22 49162 150779 24.59 199941 23 49153 149038 24.80 198191 24 48698 149567 24.56 198265 25 47995 149317 24.32 197312 26 48451 146609 24.84 195060 27 48108 151218 24.14 199326 28 48588 150779 24.37 199367 29 47947 152626 23.91 200573 30 47566 152245 23.81 199811 31 48361 150222 24.35 198583 32 47496 146925 24.43 194421 33 47954 148784 24.37 196738 34 48246 147375 24.66 195621 35 48470 147854 24.69 196324 36 47721 149898 24.15 197619 37 46655 147178 24.07 193833 38 45990 147119 23.82 193109 39 47365 148427 24.19 195792 40 47147 147204 24.26 194351 41 46327 146637 24.01 192964 42 47625 148769 24.25 196394 43 46742 148227 23.97 194969 44 46401 146042 24.11 192443 45 47268 147493 24.27 194761 46 46604 147509 24.01 194113 47 46530 145248 24.26 191778 48 46297 146465 24.02 192762 49 48009 146236 24.72 194245 50 46455 147129 24.00 193584 51 46662 146660 24.14 193322 52 47354 150819 23.90 198173 53 46113 144814 24.15 190927 54 45353 145208 23.80 190561 55 45488 142132 24.24 187620 56 44850 141600 24.05 186450 57 45977 143085 24.32 189062 58 46537 143080 24.54 189617 59 47027 140970 25.01 187997 60 46620 142561 24.64 189181 61 46894 140133 25.07 187027 62 45798 141264 24.48 187062 63 44957 140380 24.26 185337 64 44624 139527 24.23 184151 65 45284 137813 24.73 183097 66 45816 138220 24.90 184036 67 45071 134826 25.05 179897 68 44055 134160 24.72 178215 69 43985 134052 24.71 178037 70 43341 132895 24.59 176236 71 42671 130184 24.69 172855 72 42151 130824 24.37 172975 73 42205 128586 24.71 170791 74 41620 127923 24.55 169543 75 40502 127398 24.12 167900 76 40731 126901 24.30 167632 77 41071 124946 24.74 166017 78 40547 125200 24.46 165747 79 40132 123215 24.57 163347 80 39081 122022 24.26 161103 81 39058 120795 24.43 159853 82 37908 119969 24.01 157877 83 38559 120666 24.22 159225 84 38358 120895 24.09 159253 85 37876 117134 24.43 155010 86 36726 115514 24.12 152240 87 36001 115451 23.77 151452 88 35898 113940 23.96 149838 89 35754 112668 24.09 148422 90 35082 112858 23.71 147940 91 34836 110185 24.02 145021 92 34403 109988 23.83 144391 93 34332 109146 23.93 143478 94 34040 107656 24.02 141696 95 33459 107487 23.74 140946 96 33485 108021 23.66 141506 97 32256 103323 23.79 135579 98 30326 97521 23.72 127847 99 24022 76438 23.91 100460 100 31245 96376 24.48 127621 101 28274 96026 22.75 124300 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 168766 293250 36.53 462016 2 99308 283303 25.96 382611 3 48016 270941 15.05 318957 4 26814 270203 9.03 297017 5 17961 249168 6.72 267129 6 15653 246762 5.96 262415 7 12376 293824 4.04 306200 8 5790 316948 1.79 322738 9 4982 302109 1.62 307091 10 4870 293176 1.63 298046 11 5155 296995 1.71 302150 12 4939 305875 1.59 310814 13 4874 294656 1.63 299530 14 4541 294584 1.52 299125 15 4597 302019 1.50 306616 16 4013 300418 1.32 304431 17 4375 297321 1.45 301696 18 4326 300041 1.42 304367 19 3620 297364 1.20 300984 20 3746 310779 1.19 314525 21 3698 315903 1.16 319601 22 3885 309682 1.24 313567 23 3960 314581 1.24 318541 24 3772 319311 1.17 323083 25 3712 309535 1.19 313247 26 4615 312017 1.46 316632 27 3735 317659 1.16 321394 28 3532 315176 1.11 318708 29 4196 319450 1.30 323646 30 3643 320267 1.12 323910 31 3668 312439 1.16 316107 32 3664 317264 1.14 320928 33 3689 319415 1.14 323104 34 3701 313368 1.17 317069 35 4012 314952 1.26 318964 36 3750 319568 1.16 323318 37 3800 308120 1.22 311920 38 4161 312835 1.31 316996 39 3750 314032 1.18 317782 40 3675 310824 1.17 314499 41 3799 311241 1.21 315040 42 3547 314048 1.12 317595 43 3599 306331 1.16 309930 44 3664 313025 1.16 316689 45 3668 313143 1.16 316811 46 3594 309053 1.15 312647 47 3797 308927 1.21 312724 48 3669 317053 1.14 320722 49 3682 306213 1.19 309895 50 3877 308168 1.24 312045 51 3707 311398 1.18 315105 52 3800 309702 1.21 313502 53 3878 305774 1.25 309652 54 3920 312596 1.24 316516 55 3779 306359 1.22 310138 56 3906 309576 1.25 313482 57 4029 309593 1.28 313622 58 3991 305457 1.29 309448 59 4135 307013 1.33 311148 60 4054 310369 1.29 314423 61 4204 303786 1.36 307990 62 4199 303795 1.36 307994 63 4453 303134 1.45 307587 64 4445 301105 1.45 305550 65 4929 299554 1.62 304483 66 4440 295272 1.48 299712 67 4494 286254 1.55 290748 68 4734 289292 1.61 294026 69 4194 288578 1.43 292772 70 4091 280636 1.44 284727 71 4268 283116 1.49 287384 72 4180 282738 1.46 286918 73 4213 276654 1.50 280867 74 4502 275382 1.61 279884 75 4120 276580 1.47 280700 76 3964 267941 1.46 271905 77 4653 269083 1.70 273736 78 4083 266489 1.51 270572 79 3966 259153 1.51 263119 80 4074 259819 1.54 263893 81 4094 258702 1.56 262796 82 3995 251804 1.56 255799 83 4229 254751 1.63 258980 84 4060 256298 1.56 260358 85 4407 247983 1.75 252390 86 4066 249613 1.60 253679 87 4077 250406 1.60 254483 88 4243 243940 1.71 248183 89 4040 241649 1.64 245689 90 3896 240796 1.59 244692 91 3981 235013 1.67 238994 92 3993 237186 1.66 241179 93 4232 234674 1.77 238906 94 4147 228775 1.78 232922 95 4120 227299 1.78 231419 96 4208 226519 1.82 230727 97 4178 204937 2.00 209115 98 3761 189245 1.95 193006 99 2358 120970 1.91 123328 100 2646 123427 2.10 126073 101 5348 203468 2.56 208816 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 218461 428168 33.78 646629 2 121339 451614 21.18 572953 3 70560 493469 12.51 564029 4 61044 527547 10.37 588591 5 57786 598275 8.81 656061 6 47730 643105 6.91 690835 7 39830 787554 4.81 827384 8 28272 844169 3.24 872441 9 21505 785952 2.66 807457 10 21544 772248 2.71 793792 11 26868 775776 3.35 802644 12 22584 784408 2.80 806992 13 25346 795955 3.09 821301 14 27587 815578 3.27 843165 15 23292 836770 2.71 860062 16 22312 851676 2.55 873988 17 26540 854465 3.01 881005 18 21623 881725 2.39 903348 19 21881 897426 2.38 919307 20 26192 926923 2.75 953115 21 21925 927682 2.31 949607 22 24140 931259 2.53 955399 23 26570 932402 2.77 958972 24 21923 930671 2.30 952594 25 23697 935789 2.47 959486 26 26262 943426 2.71 969688 27 22307 948410 2.30 970717 28 22387 950902 2.30 973289 29 25937 952455 2.65 978392 30 22098 946013 2.28 968111 31 22521 937335 2.35 959856 32 24954 940971 2.58 965925 33 21988 941756 2.28 963744 34 24448 947507 2.52 971955 35 26146 941610 2.70 967756 36 22110 947343 2.28 969453 37 22712 939717 2.36 962429 38 26280 945730 2.70 972010 39 21782 943557 2.26 965339 40 22293 942215 2.31 964508 41 25910 943474 2.67 969384 42 22873 951242 2.35 974115 43 24012 940976 2.49 964988 44 25416 947243 2.61 972659 45 22988 940250 2.39 963238 46 22614 938745 2.35 961359 47 24843 936345 2.58 961188 48 20926 939686 2.18 960612 49 21705 929217 2.28 950922 50 24925 928070 2.62 952995 51 21205 919309 2.25 940514 52 22680 917735 2.41 940415 53 25047 913356 2.67 938403 54 21465 915825 2.29 937290 55 22150 909747 2.38 931897 56 25089 908025 2.69 933114 57 21100 915633 2.25 936733 58 21672 912264 2.32 933936 59 25174 913073 2.68 938247 60 21051 901336 2.28 922387 61 22717 894965 2.48 917682 62 24241 883325 2.67 907566 63 20966 878563 2.33 899529 64 22236 870077 2.49 892313 65 23508 865867 2.64 889375 66 20811 859479 2.36 880290 67 20511 850792 2.35 871303 68 23070 846528 2.65 869598 69 20252 841839 2.35 862091 70 20473 835364 2.39 855837 71 23201 831549 2.71 854750 72 20252 829720 2.38 849972 73 21703 815583 2.59 837286 74 22941 813435 2.74 836376 75 20162 805260 2.44 825422 76 19822 798167 2.42 817989 77 23175 789917 2.85 813092 78 19164 785259 2.38 804423 79 19742 777865 2.48 797607 80 22176 775092 2.78 797268 81 19690 762475 2.52 782165 82 20787 755141 2.68 775928 83 22121 751732 2.86 773853 84 19992 742587 2.62 762579 85 19652 728648 2.63 748300 86 21154 724620 2.84 745774 87 18435 719489 2.50 737924 88 18799 713876 2.57 732675 89 20921 702965 2.89 723886 90 17860 701496 2.48 719356 91 18621 691730 2.62 710351 92 20490 687399 2.89 707889 93 17936 681576 2.56 699512 94 18405 672109 2.67 690514 95 20188 662474 2.96 682662 96 17196 651154 2.57 668350 97 17188 630635 2.65 647823 98 18404 587689 3.04 606093 99 10687 410106 2.54 420793 100 11545 363440 3.08 374985 101 18078 590013 2.97 608091 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 116625 138723 45.67 255348 2 98355 118952 45.26 217307 3 103610 129898 44.37 233508 4 94122 145409 39.29 239531 5 41628 186992 18.21 228620 6 25481 102454 19.92 127935 7 22556 112014 16.76 134570 8 23271 105556 18.06 128827 9 20351 89706 18.49 110057 10 21862 99746 17.98 121608 11 23782 96895 19.71 120677 12 22517 93622 19.39 116139 13 23770 90095 20.88 113865 14 24294 92171 20.86 116465 15 24007 83839 22.26 107846 16 21687 81654 20.99 103341 17 27220 87749 23.68 114969 18 25314 82363 23.51 107677 19 24702 82122 23.12 106824 20 22716 79428 22.24 102144 21 24136 76659 23.95 100795 22 23468 81091 22.44 104559 23 22052 76667 22.34 98719 24 21197 74175 22.23 95372 25 23256 76292 23.36 99548 26 21350 72518 22.74 93868 27 23197 73886 23.89 97083 28 21212 70051 23.24 91263 29 22265 72616 23.47 94881 30 20988 68021 23.58 89009 31 20011 70389 22.14 90400 32 19554 66353 22.76 85907 33 22057 66546 24.89 88603 34 21459 68524 23.85 89983 35 25811 72419 26.28 98230 36 21433 65758 24.58 87191 37 21990 68078 24.41 90068 38 20010 64717 23.62 84727 39 20388 64002 24.16 84390 40 21932 63510 25.67 85442 41 19463 62173 23.84 81636 42 19859 63511 23.82 83370 43 19692 62611 23.93 82303 44 18325 60262 23.32 78587 45 22625 64560 25.95 87185 46 18158 56072 24.46 74230 47 18017 57505 23.86 75522 48 18240 56988 24.25 75228 49 17122 59261 22.42 76383 50 16685 53613 23.73 70298 51 16671 52402 24.14 69073 52 16357 54102 23.21 70459 53 17020 52089 24.63 69109 54 16479 51606 24.20 68085 55 16127 49529 24.56 65656 56 15074 49497 23.34 64571 57 15722 49168 24.23 64890 58 15108 49378 23.43 64486 59 14380 45537 24.00 59917 60 14872 45746 24.53 60618 61 13341 44973 22.88 58314 62 13338 42992 23.68 56330 63 14343 42560 25.21 56903 64 13427 43702 23.50 57129 65 13681 40421 25.29 54102 66 14126 42618 24.89 56744 67 12909 42980 23.10 55889 68 14472 43860 24.81 58332 69 12889 41017 23.91 53906 70 12462 40321 23.61 52783 71 12762 36833 25.73 49595 72 12234 36380 25.17 48614 73 11892 38130 23.77 50022 74 11079 36642 23.22 47721 75 11349 36946 23.50 48295 76 11283 35805 23.96 47088 77 11046 35965 23.50 47011 78 11217 35298 24.11 46515 79 10434 33959 23.50 44393 80 10321 33161 23.74 43482 81 10131 33465 23.24 43596 82 10293 33500 23.50 43793 83 10502 31336 25.10 41838 84 11664 34113 25.48 45777 85 9956 32266 23.58 42222 86 9892 31322 24.00 41214 87 9672 31348 23.58 41020 88 9668 30726 23.93 40394 89 10148 30805 24.78 40953 90 10103 30379 24.96 40482 91 9380 29472 24.14 38852 92 8977 29719 23.20 38696 93 8997 28999 23.68 37996 94 9361 28930 24.45 38291 95 9325 28442 24.69 37767 96 8732 28109 23.70 36841 97 9726 28864 25.20 38590 98 8682 26580 24.62 35262 99 7520 0 100.00 7520 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 34457 169036 16.93 203493 2 34445 175561 16.40 210006 3 32277 176372 15.47 208649 4 34675 185631 15.74 220306 5 4403 338612 1.28 343015 6 3206 415313 0.77 418519 7 2138 232989 0.91 235127 8 2124 255083 0.83 257207 9 1909 207717 0.91 209626 10 1920 198984 0.96 200904 11 2789 273152 1.01 275941 12 2135 209913 1.01 212048 13 2058 208524 0.98 210582 14 2020 203281 0.98 205301 15 2052 197310 1.03 199362 16 1921 181945 1.04 183866 17 2222 197964 1.11 200186 18 2124 171210 1.23 173334 19 2010 173099 1.15 175109 20 2110 171534 1.22 173644 21 2214 159487 1.37 161701 22 2121 178600 1.17 180721 23 2056 177598 1.14 179654 24 1791 157049 1.13 158840 25 1884 159922 1.16 161806 26 1968 170218 1.14 172186 27 2005 156334 1.27 158339 28 1820 149535 1.20 151355 29 1990 163822 1.20 165812 30 1851 151112 1.21 152963 31 1864 147742 1.25 149606 32 1825 151513 1.19 153338 33 2030 175684 1.14 177714 34 1810 145642 1.23 147452 35 1884 152271 1.22 154155 36 1748 146568 1.18 148316 37 1799 138154 1.29 139953 38 1948 149341 1.29 151289 39 1863 138489 1.33 140352 40 1824 133294 1.35 135118 41 1914 132244 1.43 134158 42 1896 120949 1.54 122845 43 2083 129426 1.58 131509 44 1751 126794 1.36 128545 45 1672 114618 1.44 116290 46 1653 115653 1.41 117306 47 1891 121098 1.54 122989 48 1791 112611 1.57 114402 49 1851 118534 1.54 120385 50 1900 114445 1.63 116345 51 1657 107030 1.52 108687 52 1780 104989 1.67 106769 53 2016 117183 1.69 119199 54 1749 105954 1.62 107703 55 1702 107337 1.56 109039 56 1639 104829 1.54 106468 57 1807 100773 1.76 102580 58 1569 100578 1.54 102147 59 1421 101455 1.38 102876 60 1229 94925 1.28 96154 61 1107 96058 1.14 97165 62 1140 100435 1.12 101575 63 1179 100383 1.16 101562 64 996 88801 1.11 89797 65 1108 97383 1.12 98491 66 961 86277 1.10 87238 67 1110 95336 1.15 96446 68 985 92484 1.05 93469 69 1055 87456 1.19 88511 70 1022 87696 1.15 88718 71 1046 90978 1.14 92024 72 925 81322 1.12 82247 73 932 82340 1.12 83272 74 885 85941 1.02 86826 75 856 80550 1.05 81406 76 867 78844 1.09 79711 77 940 84376 1.10 85316 78 941 79042 1.18 79983 79 924 77772 1.17 78696 80 868 76102 1.13 76970 81 881 72804 1.20 73685 82 862 71736 1.19 72598 83 891 74745 1.18 75636 84 820 69720 1.16 70540 85 885 77908 1.12 78793 86 808 71110 1.12 71918 87 801 69708 1.14 70509 88 790 66331 1.18 67121 89 859 71796 1.18 72655 90 809 68357 1.17 69166 91 863 70331 1.21 71194 92 758 66970 1.12 67728 93 728 64492 1.12 65220 94 723 62919 1.14 63642 95 822 65497 1.24 66319 96 812 61723 1.30 62535 97 798 61836 1.27 62634 98 698 59819 1.15 60517 99 504 0 100.00 504 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54125 232757 18.87 286882 2 44776 192880 18.84 237656 3 44855 192471 18.90 237326 4 45569 184189 19.83 229758 5 13993 368448 3.66 382441 6 12802 505164 2.47 517966 7 14213 675153 2.06 689366 8 12834 662507 1.90 675341 9 14252 619961 2.25 634213 10 13712 637233 2.11 650945 11 13130 624238 2.06 637368 12 12172 583167 2.04 595339 13 12277 603180 1.99 615457 14 12957 607674 2.09 620631 15 12245 620427 1.94 632672 16 11640 591713 1.93 603353 17 12686 594162 2.09 606848 18 11651 590157 1.94 601808 19 11169 547775 2.00 558944 20 12408 581796 2.09 594204 21 11577 539338 2.10 550915 22 12065 522872 2.26 534937 23 11886 513283 2.26 525169 24 10859 492371 2.16 503230 25 11705 491150 2.33 502855 26 11269 487570 2.26 498839 27 11424 516073 2.17 527497 28 11267 494720 2.23 505987 29 11319 486497 2.27 497816 30 11088 469121 2.31 480209 31 11048 455529 2.37 466577 32 10522 443070 2.32 453592 33 11102 437324 2.48 448426 34 10657 436942 2.38 447599 35 11427 448822 2.48 460249 36 10240 448174 2.23 458414 37 10398 437015 2.32 447413 38 10868 455597 2.33 466465 39 10446 418954 2.43 429400 40 10539 435283 2.36 445822 41 10486 412304 2.48 422790 42 10247 417152 2.40 427399 43 10266 394328 2.54 404594 44 9894 393977 2.45 403871 45 10078 390339 2.52 400417 46 9626 392132 2.40 401758 47 9439 385996 2.39 395435 48 9462 374914 2.46 384376 49 9459 378655 2.44 388114 50 9169 370154 2.42 379323 51 9244 358668 2.51 367912 52 8936 339500 2.56 348436 53 8989 342977 2.55 351966 54 8333 332545 2.44 340878 55 8282 342519 2.36 350801 56 8238 333056 2.41 341294 57 8068 338270 2.33 346338 58 7711 328746 2.29 336457 59 7746 313952 2.41 321698 60 7150 320913 2.18 328063 61 7387 305442 2.36 312829 62 7281 301652 2.36 308933 63 6881 304264 2.21 311145 64 7207 294261 2.39 301468 65 6916 297536 2.27 304452 66 6758 287045 2.30 293803 67 6620 286182 2.26 292802 68 6729 296544 2.22 303273 69 6655 286906 2.27 293561 70 6375 277980 2.24 284355 71 6372 273314 2.28 279686 72 6506 271014 2.34 277520 73 6350 266618 2.33 272968 74 6261 266346 2.30 272607 75 6358 266316 2.33 272674 76 5914 255615 2.26 261529 77 6352 255961 2.42 262313 78 6109 256142 2.33 262251 79 6114 260852 2.29 266966 80 6120 250141 2.39 256261 81 6079 251498 2.36 257577 82 5924 246019 2.35 251943 83 5826 244775 2.32 250601 84 6042 243560 2.42 249602 85 5609 237655 2.31 243264 86 5490 236492 2.27 241982 87 5386 232919 2.26 238305 88 5464 226353 2.36 231817 89 5431 224841 2.36 230272 90 5380 225056 2.33 230436 91 5332 221887 2.35 227219 92 5125 220525 2.27 225650 93 4954 217107 2.23 222061 94 4867 212377 2.24 217244 95 4955 209359 2.31 214314 96 4766 205990 2.26 210756 97 4648 206191 2.20 210839 98 4228 196173 2.11 200401 99 2803 0 100.00 2803