Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-153_S4_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-153_S4_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 26009397
Paired-end alignments with a unique best hit 15063635
Pairs without alignments under any condition 6426460
Pairs that did not map uniquely 4519302
Genomic sequence context not extractable (edges of chromosomes) 105740

Cytosine Methylation

Total C's analysed 469732095
Methylated C's in CpG context 14739278
Methylated C's in CHG context 2258232
Methylated C's in CHH context 6820595
Methylated C's in Unknown context 208266
Unmethylated C's in CpG context 59356101
Unmethylated C's in CHG context 103715173
Unmethylated C's in CHH context 282842716
Unmethylated C's in Unknown context 2287838
Percentage methylation (CpG context) 19.9%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 2.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7139369 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7818526 original bottom strand