CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 179370 284012 38.71 463382 2 169991 312586 35.23 482577 3 163079 274990 37.23 438069 4 172845 220313 43.96 393158 5 166404 186481 47.16 352885 6 166141 160406 50.88 326547 7 185224 161046 53.49 346270 8 89836 177813 33.56 267649 9 81050 165603 32.86 246653 10 80248 161773 33.16 242021 11 84092 167119 33.47 251211 12 81530 170903 32.30 252433 13 80740 176187 31.43 256927 14 76451 175397 30.36 251848 15 74120 177762 29.43 251882 16 69640 175149 28.45 244789 17 66264 170881 27.94 237145 18 67341 174705 27.82 242046 19 65738 175413 27.26 241151 20 66650 177606 27.29 244256 21 66423 179483 27.01 245906 22 64959 177090 26.84 242049 23 65130 175959 27.01 241089 24 63904 175457 26.70 239361 25 63382 175156 26.57 238538 26 62803 172829 26.65 235632 27 63024 177677 26.18 240701 28 64233 176632 26.67 240865 29 63271 179341 26.08 242612 30 62627 178947 25.92 241574 31 63491 175744 26.54 239235 32 61899 171583 26.51 233482 33 62862 173736 26.57 236598 34 63248 172896 26.78 236144 35 62946 172435 26.74 235381 36 62139 175861 26.11 238000 37 60840 172493 26.07 233333 38 60345 172411 25.93 232756 39 61764 174922 26.10 236686 40 61607 172776 26.28 234383 41 61177 172371 26.19 233548 42 62251 174862 26.25 237113 43 61836 172993 26.33 234829 44 61262 172594 26.20 233856 45 61966 172586 26.42 234552 46 62428 173085 26.51 235513 47 61334 170697 26.43 232031 48 61524 172086 26.34 233610 49 63431 171809 26.96 235240 50 61466 173483 26.16 234949 51 61963 173474 26.32 235437 52 61914 178987 25.70 240901 53 60867 171382 26.21 232249 54 59959 171715 25.88 231674 55 59912 167054 26.40 226966 56 59292 166476 26.26 225768 57 60841 167510 26.64 228351 58 61253 169229 26.58 230482 59 61848 167736 26.94 229584 60 60949 168597 26.55 229546 61 61470 166929 26.91 228399 62 59983 168004 26.31 227987 63 59591 166616 26.34 226207 64 59192 166597 26.22 225789 65 60148 164029 26.83 224177 66 60373 165326 26.75 225699 67 59935 161260 27.10 221195 68 58869 161015 26.77 219884 69 57951 160169 26.57 218120 70 57895 159663 26.61 217558 71 56917 157382 26.56 214299 72 56518 157215 26.44 213733 73 56162 155430 26.54 211592 74 56042 155553 26.49 211595 75 54444 154554 26.05 208998 76 54395 152559 26.28 206954 77 54188 150930 26.42 205118 78 54688 152476 26.40 207164 79 54102 149209 26.61 203311 80 52622 149217 26.07 201839 81 52138 147053 26.17 199191 82 50911 146876 25.74 197787 83 51676 147169 25.99 198845 84 51381 147843 25.79 199224 85 51302 144817 26.16 196119 86 49929 142746 25.91 192675 87 48867 141867 25.62 190734 88 49450 141271 25.93 190721 89 48574 138189 26.01 186763 90 48144 138810 25.75 186954 91 47815 136833 25.90 184648 92 46801 135627 25.65 182428 93 47198 135822 25.79 183020 94 46867 134053 25.90 180920 95 46199 132512 25.85 178711 96 46525 134510 25.70 181035 97 44794 128567 25.84 173361 98 41422 121880 25.37 163302 99 33178 95445 25.79 128623 100 42822 121393 26.08 164215 101 39770 121122 24.72 160892 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 242432 360910 40.18 603342 2 146600 343022 29.94 489622 3 68135 329852 17.12 397987 4 38230 333556 10.28 371786 5 24550 306681 7.41 331231 6 23006 300873 7.10 323879 7 15962 362986 4.21 378948 8 7473 390959 1.88 398432 9 6006 371729 1.59 377735 10 5971 359500 1.63 365471 11 6325 365650 1.70 371975 12 6069 372498 1.60 378567 13 5821 356635 1.61 362456 14 5446 359607 1.49 365053 15 5573 368293 1.49 373866 16 4867 365800 1.31 370667 17 5415 361398 1.48 366813 18 5084 362962 1.38 368046 19 4317 361738 1.18 366055 20 4559 377817 1.19 382376 21 4550 384088 1.17 388638 22 4775 376827 1.25 381602 23 4750 384144 1.22 388894 24 4461 388653 1.13 393114 25 4411 375921 1.16 380332 26 5467 379065 1.42 384532 27 4491 385707 1.15 390198 28 4347 383287 1.12 387634 29 5206 386995 1.33 392201 30 4435 389722 1.13 394157 31 4243 379969 1.10 384212 32 4197 385872 1.08 390069 33 4468 385838 1.14 390306 34 4349 380348 1.13 384697 35 4950 382772 1.28 387722 36 4458 387056 1.14 391514 37 4419 374444 1.17 378863 38 4877 380707 1.26 385584 39 4347 380095 1.13 384442 40 4268 377798 1.12 382066 41 4348 377643 1.14 381991 42 4354 380790 1.13 385144 43 4121 374895 1.09 379016 44 4181 380393 1.09 384574 45 4290 379502 1.12 383792 46 4303 376562 1.13 380865 47 4348 378152 1.14 382500 48 4158 385996 1.07 390154 49 4323 375044 1.14 379367 50 4539 376378 1.19 380917 51 4363 380366 1.13 384729 52 4458 379434 1.16 383892 53 4535 376217 1.19 380752 54 4603 381937 1.19 386540 55 4450 374490 1.17 378940 56 4615 378427 1.20 383042 57 4703 379516 1.22 384219 58 4627 375886 1.22 380513 59 4993 376852 1.31 381845 60 4680 381053 1.21 385733 61 4937 374654 1.30 379591 62 4945 375484 1.30 380429 63 5073 373632 1.34 378705 64 5192 371758 1.38 376950 65 5966 370523 1.58 376489 66 5065 366018 1.36 371083 67 4977 356797 1.38 361774 68 5583 360146 1.53 365729 69 4884 359836 1.34 364720 70 4958 351982 1.39 356940 71 4787 351106 1.35 355893 72 4981 352258 1.39 357239 73 4923 346264 1.40 351187 74 5227 343921 1.50 349148 75 4833 346259 1.38 351092 76 4686 337527 1.37 342213 77 5258 338240 1.53 343498 78 4848 334280 1.43 339128 79 4755 326687 1.43 331442 80 4876 327639 1.47 332515 81 4738 325853 1.43 330591 82 4537 318775 1.40 323312 83 5047 323071 1.54 328118 84 4917 324144 1.49 329061 85 5000 316168 1.56 321168 86 5125 318876 1.58 324001 87 4725 318426 1.46 323151 88 5099 311101 1.61 316200 89 4830 307994 1.54 312824 90 4701 310190 1.49 314891 91 4911 302137 1.60 307048 92 4933 304870 1.59 309803 93 5011 301897 1.63 306908 94 4825 295291 1.61 300116 95 5095 293264 1.71 298359 96 5062 293315 1.70 298377 97 4827 265913 1.78 270740 98 4561 245460 1.82 250021 99 2831 157987 1.76 160818 100 3236 159104 1.99 162340 101 6666 265215 2.45 271881 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 288987 509607 36.19 798594 2 163694 542934 23.17 706628 3 94146 615817 13.26 709963 4 82625 656109 11.18 738734 5 76812 756403 9.22 833215 6 63712 813410 7.26 877122 7 50536 1007443 4.78 1057979 8 36452 1074753 3.28 1111205 9 27840 1001743 2.70 1029583 10 27828 984614 2.75 1012442 11 34709 991446 3.38 1026155 12 29626 1002924 2.87 1032550 13 32999 1023757 3.12 1056756 14 35583 1046577 3.29 1082160 15 30144 1073503 2.73 1103647 16 29181 1088723 2.61 1117904 17 33793 1095163 2.99 1128956 18 28415 1130827 2.45 1159242 19 28609 1149116 2.43 1177725 20 33667 1185590 2.76 1219257 21 28598 1186175 2.35 1214773 22 31334 1191515 2.56 1222849 23 34129 1193408 2.78 1227537 24 28652 1193707 2.34 1222359 25 30809 1198349 2.51 1229158 26 34191 1210337 2.75 1244528 27 29343 1214062 2.36 1243405 28 29197 1218969 2.34 1248166 29 33312 1214910 2.67 1248222 30 28719 1209009 2.32 1237728 31 29420 1194860 2.40 1224280 32 32207 1204406 2.60 1236613 33 28709 1205343 2.33 1234052 34 32298 1210894 2.60 1243192 35 33680 1200982 2.73 1234662 36 29219 1210683 2.36 1239902 37 29437 1200887 2.39 1230324 38 33971 1210128 2.73 1244099 39 28798 1204649 2.33 1233447 40 29610 1205395 2.40 1235005 41 33968 1208556 2.73 1242524 42 30005 1220106 2.40 1250111 43 31912 1206355 2.58 1238267 44 32974 1212515 2.65 1245489 45 30519 1204726 2.47 1235245 46 29833 1207758 2.41 1237591 47 32437 1204060 2.62 1236497 48 28266 1206549 2.29 1234815 49 29059 1194344 2.38 1223403 50 32232 1193096 2.63 1225328 51 27786 1181846 2.30 1209632 52 30231 1178955 2.50 1209186 53 32052 1175239 2.65 1207291 54 28398 1176274 2.36 1204672 55 29284 1172812 2.44 1202096 56 32138 1171772 2.67 1203910 57 27642 1183717 2.28 1211359 58 28664 1178122 2.38 1206786 59 32883 1185960 2.70 1218843 60 27657 1168145 2.31 1195802 61 30088 1161820 2.52 1191908 62 31536 1148864 2.67 1180400 63 27535 1141374 2.36 1168909 64 29739 1137439 2.55 1167178 65 30838 1128708 2.66 1159546 66 27370 1122622 2.38 1149992 67 27514 1114327 2.41 1141841 68 29897 1110913 2.62 1140810 69 26555 1104267 2.35 1130822 70 27192 1099718 2.41 1126910 71 29773 1095096 2.65 1124869 72 26566 1091108 2.38 1117674 73 29061 1076586 2.63 1105647 74 29759 1071425 2.70 1101184 75 25963 1064541 2.38 1090504 76 26579 1058002 2.45 1084581 77 29899 1049000 2.77 1078899 78 24887 1043974 2.33 1068861 79 26333 1032813 2.49 1059146 80 28735 1029622 2.72 1058357 81 25954 1016678 2.49 1042632 82 26940 1007306 2.60 1034246 83 28994 1005652 2.80 1034646 84 25991 995903 2.54 1021894 85 25911 978505 2.58 1004416 86 27501 972093 2.75 999594 87 24042 967917 2.42 991959 88 25005 959161 2.54 984166 89 27105 949748 2.77 976853 90 23664 948506 2.43 972170 91 24425 936053 2.54 960478 92 26401 932092 2.75 958493 93 23164 924314 2.44 947478 94 23702 913565 2.53 937267 95 25909 903021 2.79 928930 96 22484 886344 2.47 908828 97 22448 863027 2.54 885475 98 23775 804274 2.87 828049 99 13907 557747 2.43 571654 100 14883 494410 2.92 509293 101 22932 814574 2.74 837506 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 162041 175745 47.97 337786 2 138657 151198 47.84 289855 3 147141 166635 46.89 313776 4 132810 184952 41.80 317762 5 59290 237333 19.99 296623 6 36636 130120 21.97 166756 7 31682 141681 18.27 173363 8 33845 131439 20.48 165284 9 29324 114073 20.45 143397 10 31840 125603 20.22 157443 11 33977 123465 21.58 157442 12 32212 119155 21.28 151367 13 33771 113918 22.87 147689 14 34297 117551 22.59 151848 15 33995 107064 24.10 141059 16 31831 104070 23.42 135901 17 38597 112338 25.57 150935 18 37097 106661 25.81 143758 19 35427 104337 25.35 139764 20 32546 101803 24.22 134349 21 34462 98859 25.85 133321 22 34156 103088 24.89 137244 23 32285 97967 24.79 130252 24 30345 94801 24.25 125146 25 33539 98812 25.34 132351 26 31028 94001 24.82 125029 27 33236 95281 25.86 128517 28 30303 90682 25.05 120985 29 31965 94678 25.24 126643 30 30442 87252 25.87 117694 31 29415 90962 24.44 120377 32 28726 85320 25.19 114046 33 32202 85812 27.29 118014 34 30729 89121 25.64 119850 35 37275 95898 27.99 133173 36 30410 85038 26.34 115448 37 31873 88763 26.42 120636 38 28572 84541 25.26 113113 39 29547 83120 26.23 112667 40 32532 82852 28.19 115384 41 28534 81153 26.01 109687 42 28378 82778 25.53 111156 43 28106 81462 25.65 109568 44 26463 78726 25.16 105189 45 33164 85660 27.91 118824 46 26175 74174 26.08 100349 47 26551 75897 25.92 102448 48 26405 74169 26.25 100574 49 25773 76981 25.08 102754 50 24450 70634 25.71 95084 51 24209 69316 25.89 93525 52 24578 71542 25.57 96120 53 25038 69658 26.44 94696 54 24649 68764 26.39 93413 55 24462 67074 26.72 91536 56 22814 66177 25.64 88991 57 23421 65951 26.21 89372 58 23269 66524 25.91 89793 59 21722 62031 25.94 83753 60 22694 62683 26.58 85377 61 20280 61569 24.78 81849 62 20531 59437 25.67 79968 63 22228 58815 27.43 81043 64 20651 59268 25.84 79919 65 20602 55679 27.01 76281 66 21686 58430 27.07 80116 67 20393 58410 25.88 78803 68 22157 59672 27.08 81829 69 19491 56431 25.67 75922 70 18979 55755 25.40 74734 71 19608 51670 27.51 71278 72 18266 50836 26.43 69102 73 18515 52566 26.05 71081 74 17048 50208 25.35 67256 75 17309 50433 25.55 67742 76 17745 49097 26.55 66842 77 16888 49040 25.62 65928 78 16874 49556 25.40 66430 79 16049 46713 25.57 62762 80 15859 46284 25.52 62143 81 15869 46336 25.51 62205 82 16033 46658 25.57 62691 83 16169 44521 26.64 60690 84 17853 47709 27.23 65562 85 15342 45094 25.39 60436 86 15297 44228 25.70 59525 87 15196 43523 25.88 58719 88 15011 43246 25.77 58257 89 15688 43332 26.58 59020 90 15582 42817 26.68 58399 91 14392 42190 25.44 56582 92 14277 41016 25.82 55293 93 14061 41217 25.44 55278 94 14813 41010 26.54 55823 95 14376 40013 26.43 54389 96 13787 39704 25.77 53491 97 15233 41367 26.91 56600 98 13572 37449 26.60 51021 99 12002 0 100.00 12002 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 45016 225862 16.62 270878 2 45103 230146 16.39 275249 3 42169 231476 15.41 273645 4 44076 244125 15.29 288201 5 5492 443868 1.22 449360 6 4245 546374 0.77 550619 7 2751 304469 0.90 307220 8 2683 328457 0.81 331140 9 2413 273515 0.87 275928 10 2541 261824 0.96 264365 11 3590 355971 1.00 359561 12 2672 276181 0.96 278853 13 2597 276310 0.93 278907 14 2615 266619 0.97 269234 15 2631 257469 1.01 260100 16 2368 238862 0.98 241230 17 2701 257504 1.04 260205 18 2863 226472 1.25 229335 19 2448 226495 1.07 228943 20 2506 223451 1.11 225957 21 3029 210412 1.42 213441 22 2612 235275 1.10 237887 23 2565 234864 1.08 237429 24 2152 206217 1.03 208369 25 2325 210918 1.09 213243 26 2523 223595 1.12 226118 27 2410 208685 1.14 211095 28 2214 199603 1.10 201817 29 2459 214093 1.14 216552 30 2407 203706 1.17 206113 31 2331 195019 1.18 197350 32 2280 200224 1.13 202504 33 2617 233721 1.11 236338 34 2284 193548 1.17 195832 35 2364 202787 1.15 205151 36 2297 198940 1.14 201237 37 2165 184221 1.16 186386 38 2445 197742 1.22 200187 39 2237 183493 1.20 185730 40 2229 180375 1.22 182604 41 2373 176866 1.32 179239 42 2352 165934 1.40 168286 43 2438 172750 1.39 175188 44 2210 171838 1.27 174048 45 2144 157336 1.34 159480 46 2120 158556 1.32 160676 47 2290 164763 1.37 167053 48 2139 155679 1.36 157818 49 2203 161893 1.34 164096 50 2277 157023 1.43 159300 51 2147 147426 1.44 149573 52 2198 145993 1.48 148191 53 2689 162845 1.62 165534 54 2269 147256 1.52 149525 55 2137 147974 1.42 150111 56 2071 146523 1.39 148594 57 2232 139246 1.58 141478 58 1962 139774 1.38 141736 59 1751 142171 1.22 143922 60 1711 133647 1.26 135358 61 1505 134859 1.10 136364 62 1533 140115 1.08 141648 63 1517 139861 1.07 141378 64 1305 127010 1.02 128315 65 1431 135218 1.05 136649 66 1310 122098 1.06 123408 67 1483 134075 1.09 135558 68 1331 130017 1.01 131348 69 1413 125788 1.11 127201 70 1337 125640 1.05 126977 71 1347 129478 1.03 130825 72 1399 117422 1.18 118821 73 1260 118211 1.05 119471 74 1277 122281 1.03 123558 75 1270 116108 1.08 117378 76 1166 112577 1.03 113743 77 1269 118507 1.06 119776 78 1240 111654 1.10 112894 79 1180 112068 1.04 113248 80 1118 108393 1.02 109511 81 1143 104329 1.08 105472 82 1114 103966 1.06 105080 83 1169 105353 1.10 106522 84 1052 99893 1.04 100945 85 1179 111398 1.05 112577 86 1097 101831 1.07 102928 87 1104 99559 1.10 100663 88 1075 95699 1.11 96774 89 1166 102282 1.13 103448 90 1198 98737 1.20 99935 91 1149 102291 1.11 103440 92 1043 97488 1.06 98531 93 1054 92942 1.12 93996 94 1037 92522 1.11 93559 95 1148 94346 1.20 95494 96 1186 89186 1.31 90372 97 1082 89138 1.20 90220 98 881 87010 1.00 87891 99 713 0 100.00 713 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 70483 307779 18.63 378262 2 59146 254125 18.88 313271 3 59925 255525 19.00 315450 4 59785 244605 19.64 304390 5 17443 490500 3.43 507943 6 16882 674845 2.44 691727 7 18481 907023 2.00 925504 8 16714 895862 1.83 912576 9 18918 842511 2.20 861429 10 17921 861692 2.04 879613 11 17319 849088 2.00 866407 12 16247 793432 2.01 809679 13 16204 821656 1.93 837860 14 16739 823268 1.99 840007 15 16456 846804 1.91 863260 16 15504 812021 1.87 827525 17 16283 810618 1.97 826901 18 15441 805537 1.88 820978 19 14299 745996 1.88 760295 20 16447 792708 2.03 809155 21 15343 742121 2.03 757464 22 15961 721262 2.17 737223 23 15323 710511 2.11 725834 24 14383 682149 2.06 696532 25 15438 680217 2.22 695655 26 14645 674881 2.12 689526 27 15248 716868 2.08 732116 28 14542 684079 2.08 698621 29 14690 673039 2.14 687729 30 14861 652215 2.23 667076 31 14380 638279 2.20 652659 32 13928 621446 2.19 635374 33 14671 612511 2.34 627182 34 14159 610863 2.27 625022 35 15084 627639 2.35 642723 36 13599 625692 2.13 639291 37 13902 615664 2.21 629566 38 14475 644281 2.20 658756 39 14008 589508 2.32 603516 40 13935 616196 2.21 630131 41 14077 581471 2.36 595548 42 13795 593915 2.27 607710 43 13870 562522 2.41 576392 44 13120 562803 2.28 575923 45 13633 561159 2.37 574792 46 12935 564691 2.24 577626 47 12681 554638 2.24 567319 48 13005 542874 2.34 555879 49 12585 549153 2.24 561738 50 12667 537592 2.30 550259 51 12441 523160 2.32 535601 52 11725 496291 2.31 508016 53 11932 499044 2.34 510976 54 11110 486410 2.23 497520 55 11412 502207 2.22 513619 56 10932 486306 2.20 497238 57 10876 497417 2.14 508293 58 10379 479162 2.12 489541 59 10472 461191 2.22 471663 60 10175 475712 2.09 485887 61 10300 453180 2.22 463480 62 9866 446304 2.16 456170 63 9547 451279 2.07 460826 64 9713 435203 2.18 444916 65 9386 441903 2.08 451289 66 9444 426819 2.16 436263 67 9086 427084 2.08 436170 68 9086 441585 2.02 450671 69 9300 426634 2.13 435934 70 8942 412764 2.12 421706 71 8833 407079 2.12 415912 72 9176 405483 2.21 414659 73 8728 399275 2.14 408003 74 8484 399121 2.08 407605 75 8508 398936 2.09 407444 76 8061 382844 2.06 390905 77 8690 382553 2.22 391243 78 8542 385270 2.17 393812 79 8376 390904 2.10 399280 80 8427 376049 2.19 384476 81 8628 375632 2.25 384260 82 8250 370064 2.18 378314 83 7844 368042 2.09 375886 84 8322 364322 2.23 372644 85 7834 356205 2.15 364039 86 7552 355869 2.08 363421 87 7622 352292 2.12 359914 88 7448 342172 2.13 349620 89 7455 339142 2.15 346597 90 7469 340327 2.15 347796 91 7259 338112 2.10 345371 92 6923 334973 2.02 341896 93 6936 329863 2.06 336799 94 6807 323289 2.06 330096 95 6877 318485 2.11 325362 96 6563 314271 2.05 320834 97 6275 313815 1.96 320090 98 5757 298203 1.89 303960 99 4022 0 100.00 4022