Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-152_S3_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-152_S3_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 29855018
Paired-end alignments with a unique best hit 16587295
Pairs without alignments under any condition 8473853
Pairs that did not map uniquely 4793870
Genomic sequence context not extractable (edges of chromosomes) 88004

Cytosine Methylation

Total C's analysed 516722459
Methylated C's in CpG context 17730802
Methylated C's in CHG context 2567008
Methylated C's in CHH context 8284263
Methylated C's in Unknown context 257876
Unmethylated C's in CpG context 56627623
Unmethylated C's in CHG context 110576749
Unmethylated C's in CHH context 320936014
Unmethylated C's in Unknown context 2466296
Percentage methylation (CpG context) 23.8%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 2.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8147956 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8351335 original bottom strand