EPI-151_S2_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9891354 lines in total Total number of methylation call strings processed: 19782708 Final Cytosine Methylation Report ================================= Total number of C's analysed: 218397239 Total methylated C's in CpG context: 8227458 Total methylated C's in CHG context: 1129848 Total methylated C's in CHH context: 4352339 Total C to T conversions in CpG context: 22623508 Total C to T conversions in CHG context: 46785687 Total C to T conversions in CHH context: 135278399 C methylated in CpG context: 26.7% C methylated in CHG context: 2.4% C methylated in CHH context: 3.1%