CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 141647 202900 41.11 344547 2 139545 226754 38.10 366299 3 137998 209844 39.67 347842 4 149204 185363 44.60 334567 5 144433 163280 46.94 307713 6 147945 140137 51.36 288082 7 165737 136025 54.92 301762 8 78214 160636 32.75 238850 9 70058 151854 31.57 221912 10 69786 147656 32.09 217442 11 72441 154693 31.89 227134 12 70946 155869 31.28 226815 13 69894 158694 30.58 228588 14 66323 162006 29.05 228329 15 65037 162035 28.64 227072 16 59471 161724 26.89 221195 17 56644 159211 26.24 215855 18 57447 162033 26.17 219480 19 56563 162436 25.83 218999 20 57075 164864 25.72 221939 21 56669 165565 25.50 222234 22 55447 163674 25.30 219121 23 55151 163015 25.28 218166 24 55081 163674 25.18 218755 25 53564 161890 24.86 215454 26 54492 161076 25.28 215568 27 54428 164655 24.84 219083 28 55358 164866 25.14 220224 29 54209 164043 24.84 218252 30 53125 164696 24.39 217821 31 54811 163174 25.14 217985 32 53446 160496 24.98 213942 33 54303 163197 24.97 217500 34 54875 162982 25.19 217857 35 53882 161946 24.97 215828 36 53664 164929 24.55 218593 37 52227 160829 24.51 213056 38 51643 159201 24.49 210844 39 52975 162321 24.61 215296 40 53073 160217 24.88 213290 41 52018 160148 24.52 212166 42 53806 163600 24.75 217406 43 52526 161445 24.55 213971 44 52175 160109 24.58 212284 45 52882 160761 24.75 213643 46 52705 161735 24.58 214440 47 52131 158866 24.71 210997 48 51967 160117 24.50 212084 49 53878 159722 25.22 213600 50 51697 160629 24.35 212326 51 52316 159970 24.64 212286 52 52850 163529 24.42 216379 53 51559 158027 24.60 209586 54 51721 157712 24.70 209433 55 51013 156139 24.63 207152 56 50715 155866 24.55 206581 57 52109 156940 24.93 209049 58 52086 157844 24.81 209930 59 52741 155920 25.28 208661 60 52017 157928 24.78 209945 61 52905 154699 25.48 207604 62 51223 155612 24.77 206835 63 50899 154869 24.74 205768 64 50370 154260 24.62 204630 65 50766 153631 24.84 204397 66 51260 153382 25.05 204642 67 50730 150858 25.17 201588 68 49858 150927 24.83 200785 69 49187 150067 24.69 199254 70 49019 148791 24.78 197810 71 47981 146323 24.69 194304 72 47791 146204 24.64 193995 73 47350 144512 24.68 191862 74 47559 144765 24.73 192324 75 45935 144181 24.16 190116 76 46160 143694 24.31 189854 77 46538 142400 24.63 188938 78 46390 142961 24.50 189351 79 45605 141273 24.40 186878 80 44956 139564 24.36 184520 81 44063 138693 24.11 182756 82 43190 136620 24.02 179810 83 43794 137720 24.13 181514 84 43458 137780 23.98 181238 85 43197 135280 24.20 178477 86 41849 132980 23.94 174829 87 41081 133404 23.54 174485 88 41541 131622 23.99 173163 89 41122 128232 24.28 169354 90 40599 130582 23.72 171181 91 40327 127370 24.05 167697 92 39580 127358 23.71 166938 93 39442 126472 23.77 165914 94 39029 125704 23.69 164733 95 38454 124517 23.60 162971 96 38127 124484 23.45 162611 97 37203 120351 23.61 157554 98 34930 112961 23.62 147891 99 27737 89449 23.67 117186 100 35726 112130 24.16 147856 101 32417 112215 22.41 144632 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 183190 311631 37.02 494821 2 102618 303186 25.29 405804 3 47161 292569 13.88 339730 4 28080 294840 8.70 322920 5 19584 267510 6.82 287094 6 15816 257478 5.79 273294 7 13822 317606 4.17 331428 8 6608 343162 1.89 349770 9 5443 326747 1.64 332190 10 5381 319366 1.66 324747 11 5737 325465 1.73 331202 12 5720 329450 1.71 335170 13 5341 318894 1.65 324235 14 5028 319023 1.55 324051 15 4978 329040 1.49 334018 16 4352 330020 1.30 334372 17 4708 325108 1.43 329816 18 4581 325373 1.39 329954 19 3810 324319 1.16 328129 20 4045 340761 1.17 344806 21 3951 344921 1.13 348872 22 4040 338892 1.18 342932 23 4329 345497 1.24 349826 24 3826 348856 1.08 352682 25 3995 337519 1.17 341514 26 4990 342165 1.44 347155 27 4100 347752 1.17 351852 28 3843 344660 1.10 348503 29 4491 348042 1.27 352533 30 3741 350319 1.06 354060 31 3754 340550 1.09 344304 32 3776 346366 1.08 350142 33 3968 348808 1.12 352776 34 3845 341736 1.11 345581 35 4451 344090 1.28 348541 36 3929 347730 1.12 351659 37 4111 334740 1.21 338851 38 4271 342705 1.23 346976 39 3918 340929 1.14 344847 40 3766 340982 1.09 344748 41 3868 341766 1.12 345634 42 3820 343691 1.10 347511 43 3731 335512 1.10 339243 44 3749 340633 1.09 344382 45 3810 341566 1.10 345376 46 3839 337795 1.12 341634 47 3999 338931 1.17 342930 48 3770 347495 1.07 351265 49 3859 337642 1.13 341501 50 4170 337932 1.22 342102 51 3819 341776 1.11 345595 52 4017 340286 1.17 344303 53 4044 335884 1.19 339928 54 4173 344889 1.20 349062 55 4097 337625 1.20 341722 56 4041 341027 1.17 345068 57 4251 340176 1.23 344427 58 4096 335359 1.21 339455 59 4521 337767 1.32 342288 60 4179 341014 1.21 345193 61 4349 333715 1.29 338064 62 4509 334963 1.33 339472 63 4538 332397 1.35 336935 64 4588 330398 1.37 334986 65 5157 329293 1.54 334450 66 4465 325771 1.35 330236 67 4587 318318 1.42 322905 68 4955 321036 1.52 325991 69 4340 320060 1.34 324400 70 4364 312986 1.38 317350 71 4327 314345 1.36 318672 72 4341 315862 1.36 320203 73 4253 310681 1.35 314934 74 4525 308766 1.44 313291 75 4284 308758 1.37 313042 76 4237 301522 1.39 305759 77 4621 302436 1.50 307057 78 4257 299777 1.40 304034 79 4250 291779 1.44 296029 80 4234 293256 1.42 297490 81 4199 290971 1.42 295170 82 4238 284462 1.47 288700 83 4330 289491 1.47 293821 84 4515 289899 1.53 294414 85 4631 282010 1.62 286641 86 4443 282687 1.55 287130 87 4272 284860 1.48 289132 88 4566 276616 1.62 281182 89 4372 277012 1.55 281384 90 4217 275602 1.51 279819 91 4195 270439 1.53 274634 92 4424 271015 1.61 275439 93 4460 269383 1.63 273843 94 4247 263432 1.59 267679 95 4467 261804 1.68 266271 96 4403 261198 1.66 265601 97 4441 237758 1.83 242199 98 4090 218907 1.83 222997 99 2600 141790 1.80 144390 100 2994 142986 2.05 145980 101 5513 235683 2.29 241196 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 253174 447023 36.16 700197 2 140389 480593 22.61 620982 3 80842 525319 13.34 606161 4 72774 555777 11.58 628551 5 67488 628512 9.70 696000 6 56479 677626 7.69 734105 7 47788 846114 5.35 893902 8 33130 915868 3.49 948998 9 25163 850614 2.87 875777 10 24781 829042 2.90 853823 11 30953 837278 3.57 868231 12 26439 845891 3.03 872330 13 29698 856918 3.35 886616 14 31787 884987 3.47 916774 15 27523 911903 2.93 939426 16 26578 926288 2.79 952866 17 30256 934019 3.14 964275 18 25431 964621 2.57 990052 19 25996 983556 2.58 1009552 20 30098 1013501 2.88 1043599 21 25860 1016389 2.48 1042249 22 28272 1020629 2.70 1048901 23 30625 1016795 2.92 1047420 24 26275 1019616 2.51 1045891 25 28058 1022109 2.67 1050167 26 30566 1032246 2.88 1062812 27 25939 1035834 2.44 1061773 28 25958 1042695 2.43 1068653 29 30077 1039316 2.81 1069393 30 25938 1034056 2.45 1059994 31 26741 1024391 2.54 1051132 32 28707 1026542 2.72 1055249 33 25853 1029617 2.45 1055470 34 28690 1034320 2.70 1063010 35 30303 1028437 2.86 1058740 36 25874 1036943 2.43 1062817 37 26445 1027129 2.51 1053574 38 30776 1037455 2.88 1068231 39 25590 1032085 2.42 1057675 40 26227 1027509 2.49 1053736 41 30388 1032319 2.86 1062707 42 26803 1037731 2.52 1064534 43 28365 1029268 2.68 1057633 44 29534 1035699 2.77 1065233 45 27168 1027814 2.58 1054982 46 26591 1031138 2.51 1057729 47 28796 1031300 2.72 1060096 48 25030 1029419 2.37 1054449 49 25536 1019968 2.44 1045504 50 29181 1019825 2.78 1049006 51 24979 1012473 2.41 1037452 52 26647 1009933 2.57 1036580 53 29264 1005034 2.83 1034298 54 25348 1007824 2.45 1033172 55 25819 1000628 2.52 1026447 56 28718 1000490 2.79 1029208 57 24762 1005518 2.40 1030280 58 25235 1002413 2.46 1027648 59 29205 1003547 2.83 1032752 60 24666 997455 2.41 1022121 61 26452 990250 2.60 1016702 62 28372 979216 2.82 1007588 63 24477 975075 2.45 999552 64 26106 968533 2.62 994639 65 27422 964162 2.77 991584 66 24350 958843 2.48 983193 67 24464 952016 2.51 976480 68 26604 948727 2.73 975331 69 23674 945768 2.44 969442 70 23947 937467 2.49 961414 71 26764 934778 2.78 961542 72 23651 933078 2.47 956729 73 25546 919439 2.70 944985 74 26773 918563 2.83 945336 75 23470 910243 2.51 933713 76 23617 906017 2.54 929634 77 27001 896156 2.92 923157 78 22471 892607 2.46 915078 79 23376 885648 2.57 909024 80 26198 881675 2.89 907873 81 23687 870349 2.65 894036 82 24466 861841 2.76 886307 83 25861 860089 2.92 885950 84 23217 851346 2.65 874563 85 23359 839182 2.71 862541 86 24540 830461 2.87 855001 87 21468 825604 2.53 847072 88 22255 819149 2.64 841404 89 24207 810079 2.90 834286 90 21245 808096 2.56 829341 91 21797 797251 2.66 819048 92 23706 792911 2.90 816617 93 21443 786558 2.65 808001 94 21265 777434 2.66 798699 95 23586 767862 2.98 791448 96 20322 752843 2.63 773165 97 20062 732783 2.66 752845 98 21143 680468 3.01 701611 99 12408 476379 2.54 488787 100 13400 422719 3.07 436119 101 20487 689804 2.88 710291 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 131890 160105 45.17 291995 2 112101 139233 44.60 251334 3 119807 153905 43.77 273712 4 109681 173102 38.79 282783 5 48563 224737 17.77 273300 6 29408 122195 19.40 151603 7 26007 130360 16.63 156367 8 27633 122950 18.35 150583 9 24499 105531 18.84 130030 10 25721 116547 18.08 142268 11 28288 113808 19.91 142096 12 26964 109418 19.77 136382 13 27705 106736 20.61 134441 14 28589 110064 20.62 138653 15 28578 99264 22.35 127842 16 25946 95941 21.29 121887 17 31100 104352 22.96 135452 18 29960 98377 23.34 128337 19 29698 98607 23.15 128305 20 26858 94029 22.22 120887 21 28584 92124 23.68 120708 22 27965 95380 22.67 123345 23 26516 91083 22.55 117599 24 24871 88603 21.92 113474 25 27769 90247 23.53 118016 26 25067 87279 22.31 112346 27 27553 87324 23.98 114877 28 24961 83409 23.03 108370 29 26039 86778 23.08 112817 30 25086 81547 23.53 106633 31 24235 84383 22.31 108618 32 23735 78776 23.15 102511 33 26672 79929 25.02 106601 34 25686 83616 23.50 109302 35 30305 88481 25.51 118786 36 25412 79192 24.29 104604 37 26236 81780 24.29 108016 38 23489 78468 23.04 101957 39 24540 76796 24.22 101336 40 26633 76492 25.83 103125 41 23584 74982 23.93 98566 42 23835 77187 23.59 101022 43 23372 75356 23.67 98728 44 21992 73189 23.11 95181 45 26766 78244 25.49 105010 46 21540 68836 23.83 90376 47 22043 70809 23.74 92852 48 22339 70022 24.19 92361 49 21084 72098 22.63 93182 50 20213 65710 23.52 85923 51 19997 64481 23.67 84478 52 20261 66721 23.29 86982 53 20939 65607 24.19 86546 54 19874 65494 23.28 85368 55 20061 62269 24.37 82330 56 18940 61553 23.53 80493 57 19575 62449 23.86 82024 58 18819 62463 23.15 81282 59 18158 57619 23.96 75777 60 18666 57855 24.39 76521 61 16602 56815 22.61 73417 62 16701 54982 23.30 71683 63 17930 53745 25.02 71675 64 16656 55083 23.22 71739 65 16756 52042 24.36 68798 66 17313 54200 24.21 71513 67 16431 54910 23.03 71341 68 17839 55706 24.26 73545 69 15915 52310 23.33 68225 70 15478 51113 23.24 66591 71 15684 48107 24.59 63791 72 15566 46803 24.96 62369 73 15130 48058 23.94 63188 74 13755 46789 22.72 60544 75 14000 47327 22.83 61327 76 14296 45149 24.05 59445 77 13897 46312 23.08 60209 78 13901 45441 23.43 59342 79 13317 44000 23.23 57317 80 13161 42638 23.59 55799 81 12952 43570 22.91 56522 82 13073 43380 23.16 56453 83 13114 40965 24.25 54079 84 14660 45048 24.55 59708 85 12577 41940 23.07 54517 86 12257 41127 22.96 53384 87 12205 40358 23.22 52563 88 12390 39614 23.83 52004 89 12918 40712 24.09 53630 90 12725 40404 23.95 53129 91 11806 38735 23.36 50541 92 11510 38221 23.14 49731 93 11482 37905 23.25 49387 94 12249 38145 24.31 50394 95 11644 36797 24.04 48441 96 11192 36689 23.37 47881 97 12317 39039 23.98 51356 98 10800 35073 23.54 45873 99 9760 0 100.00 9760 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 37886 196234 16.18 234120 2 39257 203203 16.19 242460 3 36054 204201 15.01 240255 4 37728 216569 14.84 254297 5 4882 391475 1.23 396357 6 3696 480720 0.76 484416 7 2332 270351 0.86 272683 8 2415 293244 0.82 295659 9 2151 241690 0.88 243841 10 2184 230580 0.94 232764 11 3203 309446 1.02 312649 12 2277 244838 0.92 247115 13 2325 241980 0.95 244305 14 2414 235505 1.01 237919 15 2313 228280 1.00 230593 16 2157 212260 1.01 214417 17 2384 226919 1.04 229303 18 2567 198928 1.27 201495 19 2240 199746 1.11 201986 20 2218 200618 1.09 202836 21 2599 186643 1.37 189242 22 2413 208417 1.14 210830 23 2355 204774 1.14 207129 24 2037 183874 1.10 185911 25 2062 187557 1.09 189619 26 2235 196771 1.12 199006 27 2070 182508 1.12 184578 28 2000 175317 1.13 177317 29 2198 190343 1.14 192541 30 2160 177231 1.20 179391 31 1975 172421 1.13 174396 32 1928 177442 1.07 179370 33 2222 203225 1.08 205447 34 2063 171960 1.19 174023 35 2117 178455 1.17 180572 36 1996 174353 1.13 176349 37 1907 162937 1.16 164844 38 2098 175495 1.18 177593 39 2012 163522 1.22 165534 40 2004 158591 1.25 160595 41 2001 156107 1.27 158108 42 2013 145810 1.36 147823 43 2028 153233 1.31 155261 44 1843 151916 1.20 153759 45 1754 138339 1.25 140093 46 1902 139937 1.34 141839 47 2044 144644 1.39 146688 48 1910 136862 1.38 138772 49 1936 145112 1.32 147048 50 2032 138711 1.44 140743 51 1843 129049 1.41 130892 52 1888 127031 1.46 128919 53 2156 142457 1.49 144613 54 1829 128034 1.41 129863 55 1860 130807 1.40 132667 56 1793 127044 1.39 128837 57 1995 122734 1.60 124729 58 1729 123475 1.38 125204 59 1537 124461 1.22 125998 60 1516 118272 1.27 119788 61 1365 117879 1.14 119244 62 1342 122726 1.08 124068 63 1353 123789 1.08 125142 64 1108 110594 0.99 111702 65 1317 118340 1.10 119657 66 1186 106634 1.10 107820 67 1260 116603 1.07 117863 68 1163 113991 1.01 115154 69 1186 109481 1.07 110667 70 1193 109147 1.08 110340 71 1103 112690 0.97 113793 72 1092 102162 1.06 103254 73 1070 102978 1.03 104048 74 1041 106012 0.97 107053 75 1069 99596 1.06 100665 76 979 97909 0.99 98888 77 1111 104149 1.06 105260 78 1087 97604 1.10 98691 79 1086 97684 1.10 98770 80 1027 94331 1.08 95358 81 987 90720 1.08 91707 82 1043 89560 1.15 90603 83 1082 92468 1.16 93550 84 971 87324 1.10 88295 85 1076 98301 1.08 99377 86 1005 88853 1.12 89858 87 1011 88042 1.14 89053 88 986 84148 1.16 85134 89 1021 89366 1.13 90387 90 981 86909 1.12 87890 91 1002 89493 1.11 90495 92 958 85496 1.11 86454 93 1012 82161 1.22 83173 94 895 80049 1.11 80944 95 997 82648 1.19 83645 96 949 77256 1.21 78205 97 903 77790 1.15 78693 98 769 76449 1.00 77218 99 570 0 100.00 570 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 60984 267331 18.57 328315 2 51715 220564 18.99 272279 3 52147 221537 19.05 273684 4 51752 211647 19.65 263399 5 16075 418400 3.70 434475 6 15158 575779 2.57 590937 7 16385 772259 2.08 788644 8 15363 761010 1.98 776373 9 16378 714674 2.24 731052 10 15706 733592 2.10 749298 11 15642 721183 2.12 736825 12 14755 673514 2.14 688269 13 14528 695430 2.05 709958 14 15164 699786 2.12 714950 15 14598 716206 2.00 730804 16 13397 686408 1.91 699805 17 14925 687033 2.13 701958 18 13845 682606 1.99 696451 19 12731 635706 1.96 648437 20 14805 673746 2.15 688551 21 13737 628988 2.14 642725 22 14248 608912 2.29 623160 23 13997 600800 2.28 614797 24 12547 576386 2.13 588933 25 14054 575755 2.38 589809 26 13223 571271 2.26 584494 27 13497 605949 2.18 619446 28 12957 580491 2.18 593448 29 13287 571907 2.27 585194 30 13640 553910 2.40 567550 31 13072 538638 2.37 551710 32 12424 522767 2.32 535191 33 13352 515255 2.53 528607 34 12497 514361 2.37 526858 35 13147 531545 2.41 544692 36 11971 528803 2.21 540774 37 12059 518254 2.27 530313 38 12858 537774 2.34 550632 39 12384 496683 2.43 509067 40 12441 518485 2.34 530926 41 12726 490370 2.53 503096 42 12428 500559 2.42 512987 43 12322 473725 2.54 486047 44 11651 471918 2.41 483569 45 12029 470371 2.49 482400 46 11420 472782 2.36 484202 47 11174 464623 2.35 475797 48 11309 452429 2.44 463738 49 11151 458117 2.38 469268 50 10881 449667 2.36 460548 51 10803 436930 2.41 447733 52 10294 415016 2.42 425310 53 10383 417474 2.43 427857 54 9857 405156 2.38 415013 55 9709 419362 2.26 429071 56 9804 407538 2.35 417342 57 9633 412804 2.28 422437 58 9045 401909 2.20 410954 59 9487 386887 2.39 396374 60 8960 395641 2.21 404601 61 9129 376699 2.37 385828 62 8866 373843 2.32 382709 63 8236 375336 2.15 383572 64 8754 364224 2.35 372978 65 8361 368579 2.22 376940 66 8155 358154 2.23 366309 67 7996 355608 2.20 363604 68 8215 366510 2.19 374725 69 8046 357234 2.20 365280 70 7916 345206 2.24 353122 71 7617 338702 2.20 346319 72 8111 337492 2.35 345603 73 7802 332242 2.29 340044 74 7529 331717 2.22 339246 75 7722 332461 2.27 340183 76 7028 320092 2.15 327120 77 8021 317534 2.46 325555 78 7453 319363 2.28 326816 79 7511 324931 2.26 332442 80 7624 314010 2.37 321634 81 7543 314592 2.34 322135 82 7375 307661 2.34 315036 83 6903 306104 2.21 313007 84 7337 304484 2.35 311821 85 6795 298008 2.23 304803 86 6715 297865 2.20 304580 87 6646 293589 2.21 300235 88 6550 285150 2.25 291700 89 6609 282480 2.29 289089 90 6471 282739 2.24 289210 91 6286 280348 2.19 286634 92 6269 276680 2.22 282949 93 6138 273083 2.20 279221 94 5814 270474 2.10 276288 95 6193 265352 2.28 271545 96 5782 262082 2.16 267864 97 5342 260673 2.01 266015 98 5101 247647 2.02 252748 99 3632 0 100.00 3632