Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-151_S2_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-151_S2_L002_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 24505793
Paired-end alignments with a unique best hit 14279247
Pairs without alignments under any condition 6024162
Pairs that did not map uniquely 4202384
Genomic sequence context not extractable (edges of chromosomes) 74305

Cytosine Methylation

Total C's analysed 446958923
Methylated C's in CpG context 14994416
Methylated C's in CHG context 2097465
Methylated C's in CHH context 7361468
Methylated C's in Unknown context 213775
Unmethylated C's in CpG context 52937640
Unmethylated C's in CHG context 98126053
Unmethylated C's in CHH context 271441881
Unmethylated C's in Unknown context 2132911
Percentage methylation (CpG context) 22.1%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 2.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6999301 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7205641 original bottom strand