CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 239038 414214 36.59 653252 2 220290 441281 33.30 661571 3 195163 380347 33.91 575510 4 194181 283126 40.68 477307 5 183988 239850 43.41 423838 6 185256 206525 47.29 391781 7 202337 196715 50.70 399052 8 93460 228296 29.05 321756 9 85052 208756 28.95 293808 10 85118 199774 29.88 284892 11 87193 202659 30.08 289852 12 83952 209512 28.61 293464 13 82328 213738 27.81 296066 14 77225 211056 26.79 288281 15 74539 213020 25.92 287559 16 68709 208894 24.75 277603 17 65184 202021 24.39 267205 18 67948 205024 24.89 272972 19 66452 208692 24.15 275144 20 67291 210552 24.22 277843 21 67808 214390 24.03 282198 22 66755 211433 24.00 278188 23 66060 208610 24.05 274670 24 65047 208638 23.77 273685 25 63497 206824 23.49 270321 26 64051 204280 23.87 268331 27 63314 211456 23.04 274770 28 65533 207928 23.96 273461 29 63751 212948 23.04 276699 30 63228 209120 23.22 272348 31 64054 205447 23.77 269501 32 62705 201252 23.76 263957 33 63259 204326 23.64 267585 34 64018 202708 24.00 266726 35 62424 201701 23.63 264125 36 61842 205251 23.15 267093 37 60386 200673 23.13 261059 38 60558 201643 23.10 262201 39 62486 204137 23.44 266623 40 62675 201472 23.73 264147 41 61905 202353 23.43 264258 42 63670 206355 23.58 270025 43 62537 204609 23.41 267146 44 61957 201840 23.49 263797 45 62733 202464 23.66 265197 46 63475 204811 23.66 268286 47 62925 200762 23.86 263687 48 62825 202645 23.67 265470 49 64598 201149 24.31 265747 50 61958 204665 23.24 266623 51 62299 204221 23.37 266520 52 62508 212291 22.75 274799 53 61415 201933 23.32 263348 54 60283 200127 23.15 260410 55 59763 195363 23.42 255126 56 59784 194366 23.52 254150 57 60503 195650 23.62 256153 58 61426 196419 23.82 257845 59 61872 196266 23.97 258138 60 60523 197591 23.45 258114 61 61557 194483 24.04 256040 62 59822 198848 23.13 258670 63 59306 196125 23.22 255431 64 59544 194908 23.40 254452 65 59771 191831 23.76 251602 66 60467 193519 23.81 253986 67 59321 189608 23.83 248929 68 58501 189404 23.60 247905 69 57278 187927 23.36 245205 70 57349 188239 23.35 245588 71 56723 185638 23.40 242361 72 56675 185071 23.44 241746 73 56044 182579 23.49 238623 74 55485 181442 23.42 236927 75 53696 180904 22.89 234600 76 54380 179560 23.25 233940 77 54655 178845 23.41 233500 78 54006 178513 23.23 232519 79 53755 176417 23.35 230172 80 51972 175932 22.80 227904 81 52509 173909 23.19 226418 82 51150 173270 22.79 224420 83 51308 174245 22.75 225553 84 51544 174718 22.78 226262 85 51105 173054 22.80 224159 86 50473 170506 22.84 220979 87 49754 168566 22.79 218320 88 49618 168231 22.78 217849 89 48786 166228 22.69 215014 90 48536 165890 22.64 214426 91 49013 163630 23.05 212643 92 46912 162872 22.36 209784 93 46991 162691 22.41 209682 94 46991 161402 22.55 208393 95 46537 159249 22.61 205786 96 46441 162590 22.22 209031 97 45075 155841 22.43 200916 98 42068 147163 22.23 189231 99 33031 115652 22.22 148683 100 43662 147483 22.84 191145 101 39444 145424 21.34 184868 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 355927 405046 46.77 760973 2 210836 360492 36.90 571328 3 80033 351170 18.56 431203 4 36267 367397 8.98 403664 5 21945 345287 5.98 367232 6 17780 333015 5.07 350795 7 13783 424121 3.15 437904 8 5707 459515 1.23 465222 9 4743 424666 1.10 429409 10 4700 402552 1.15 407252 11 4792 404734 1.17 409526 12 4695 407788 1.14 412483 13 4154 389317 1.06 393471 14 3841 390101 0.98 393942 15 3682 400370 0.91 404052 16 3454 397685 0.86 401139 17 3497 395076 0.88 398573 18 3645 394957 0.91 398602 19 3097 394477 0.78 397574 20 3222 413583 0.77 416805 21 3223 420965 0.76 424188 22 3341 415019 0.80 418360 23 3441 419951 0.81 423392 24 3215 424003 0.75 427218 25 3187 410004 0.77 413191 26 3703 412926 0.89 416629 27 3285 418097 0.78 421382 28 3174 416306 0.76 419480 29 3546 421514 0.83 425060 30 3276 424457 0.77 427733 31 3204 417236 0.76 420440 32 3085 417764 0.73 420849 33 3264 418385 0.77 421649 34 3110 413417 0.75 416527 35 3449 417339 0.82 420788 36 3057 417475 0.73 420532 37 3234 407970 0.79 411204 38 3391 414922 0.81 418313 39 3282 411452 0.79 414734 40 3165 409925 0.77 413090 41 3211 412221 0.77 415432 42 3225 413877 0.77 417102 43 3048 408458 0.74 411506 44 3213 415564 0.77 418777 45 3153 414018 0.76 417171 46 3167 409446 0.77 412613 47 3238 411243 0.78 414481 48 3252 417627 0.77 420879 49 3197 407916 0.78 411113 50 3350 411114 0.81 414464 51 3244 413647 0.78 416891 52 3351 413515 0.80 416866 53 3265 411887 0.79 415152 54 3331 416292 0.79 419623 55 3288 410366 0.79 413654 56 3572 413380 0.86 416952 57 3479 414343 0.83 417822 58 4153 408414 1.01 412567 59 3832 412830 0.92 416662 60 3789 416595 0.90 420384 61 3856 412471 0.93 416327 62 3850 413673 0.92 417523 63 4077 409715 0.99 413792 64 3904 408380 0.95 412284 65 4366 407001 1.06 411367 66 4169 400994 1.03 405163 67 4106 391833 1.04 395939 68 4046 394167 1.02 398213 69 3833 394687 0.96 398520 70 3936 389559 1.00 393495 71 3940 389032 1.00 392972 72 3860 388301 0.98 392161 73 3948 383215 1.02 387163 74 3948 381041 1.03 384989 75 3943 382645 1.02 386588 76 3737 372756 0.99 376493 77 3926 375227 1.04 379153 78 3694 370844 0.99 374538 79 3786 364569 1.03 368355 80 3762 363662 1.02 367424 81 3715 361819 1.02 365534 82 3701 356987 1.03 360688 83 3805 362501 1.04 366306 84 3896 362787 1.06 366683 85 3869 354413 1.08 358282 86 3834 357769 1.06 361603 87 3815 357233 1.06 361048 88 3815 349726 1.08 353541 89 3955 348280 1.12 352235 90 4024 348164 1.14 352188 91 3871 341901 1.12 345772 92 4007 344248 1.15 348255 93 4137 342594 1.19 346731 94 4032 335726 1.19 339758 95 4077 334807 1.20 338884 96 4225 332936 1.25 337161 97 4086 303300 1.33 307386 98 3700 279348 1.31 283048 99 2486 181279 1.35 183765 100 2700 184975 1.44 187675 101 5305 300064 1.74 305369 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 307634 439628 41.17 747262 2 143669 465876 23.57 609545 3 66725 602986 9.96 669711 4 56469 661091 7.87 717560 5 49407 795913 5.84 845320 6 39451 881825 4.28 921276 7 35233 1132539 3.02 1167772 8 21228 1220334 1.71 1241562 9 16543 1115296 1.46 1131839 10 16223 1089447 1.47 1105670 11 18862 1093956 1.69 1112818 12 16476 1121660 1.45 1138136 13 18191 1147676 1.56 1165867 14 18705 1177830 1.56 1196535 15 16744 1208380 1.37 1225124 16 16626 1235971 1.33 1252597 17 18337 1240714 1.46 1259051 18 16292 1287900 1.25 1304192 19 16270 1317997 1.22 1334267 20 18225 1357712 1.32 1375937 21 16389 1361202 1.19 1377591 22 17462 1360995 1.27 1378457 23 18555 1362512 1.34 1381067 24 16573 1363842 1.20 1380415 25 17450 1370420 1.26 1387870 26 18330 1382225 1.31 1400555 27 16728 1386720 1.19 1403448 28 16751 1391156 1.19 1407907 29 18207 1386620 1.30 1404827 30 16570 1369758 1.20 1386328 31 16595 1352631 1.21 1369226 32 17733 1366328 1.28 1384061 33 16245 1357044 1.18 1373289 34 17678 1370864 1.27 1388542 35 18335 1360012 1.33 1378347 36 16708 1372416 1.20 1389124 37 16488 1365563 1.19 1382051 38 18373 1368612 1.32 1386985 39 16371 1362866 1.19 1379237 40 16884 1365705 1.22 1382589 41 18558 1371354 1.34 1389912 42 17135 1381827 1.22 1398962 43 17786 1364514 1.29 1382300 44 17974 1372002 1.29 1389976 45 17074 1365245 1.24 1382319 46 16845 1370355 1.21 1387200 47 17787 1364944 1.29 1382731 48 16095 1365243 1.17 1381338 49 16415 1350968 1.20 1367383 50 17755 1348448 1.30 1366203 51 16146 1337031 1.19 1353177 52 16907 1334224 1.25 1351131 53 17614 1329346 1.31 1346960 54 16078 1330848 1.19 1346926 55 16838 1332867 1.25 1349705 56 17595 1330799 1.30 1348394 57 16016 1346556 1.18 1362572 58 18070 1331052 1.34 1349122 59 18253 1348999 1.34 1367252 60 16300 1330039 1.21 1346339 61 17100 1322168 1.28 1339268 62 17752 1314725 1.33 1332477 63 16108 1301048 1.22 1317156 64 17129 1296225 1.30 1313354 65 17269 1294682 1.32 1311951 66 16130 1285405 1.24 1301535 67 16092 1280571 1.24 1296663 68 16986 1274038 1.32 1291024 69 15912 1266699 1.24 1282611 70 16097 1266338 1.26 1282435 71 17588 1258661 1.38 1276249 72 15769 1256238 1.24 1272007 73 16908 1241811 1.34 1258719 74 17070 1241485 1.36 1258555 75 15894 1231853 1.27 1247747 76 15791 1226002 1.27 1241793 77 17150 1216126 1.39 1233276 78 15034 1210996 1.23 1226030 79 15665 1205926 1.28 1221591 80 16587 1198915 1.36 1215502 81 15634 1185496 1.30 1201130 82 16081 1176043 1.35 1192124 83 16509 1178362 1.38 1194871 84 15114 1165669 1.28 1180783 85 15064 1151646 1.29 1166710 86 15721 1143767 1.36 1159488 87 14702 1140514 1.27 1155216 88 14445 1134709 1.26 1149154 89 15872 1125438 1.39 1141310 90 14517 1120569 1.28 1135086 91 14978 1108826 1.33 1123804 92 15401 1107169 1.37 1122570 93 14536 1098107 1.31 1112643 94 14700 1088222 1.33 1102922 95 15508 1077649 1.42 1093157 96 14315 1059093 1.33 1073408 97 14396 1034336 1.37 1048732 98 14548 963085 1.49 977633 99 9378 667711 1.39 677089 100 9820 596233 1.62 606053 101 14205 971034 1.44 985239 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 149167 206084 41.99 355251 2 132678 189224 41.22 321902 3 143042 208836 40.65 351878 4 135687 235285 36.58 370972 5 57978 294691 16.44 352669 6 34049 158256 17.71 192305 7 31000 171921 15.28 202921 8 32733 161995 16.81 194728 9 29372 142813 17.06 172185 10 32836 158436 17.17 191272 11 34608 153549 18.39 188157 12 33825 148968 18.50 182793 13 34258 145047 19.11 179305 14 36330 146157 19.91 182487 15 34957 134739 20.60 169696 16 33798 132391 20.34 166189 17 40138 143889 21.81 184027 18 39629 135970 22.57 175599 19 37180 131871 21.99 169051 20 35581 128985 21.62 164566 21 36911 126782 22.55 163693 22 36548 130167 21.92 166715 23 34647 125832 21.59 160479 24 33531 120741 21.73 154272 25 36465 126856 22.33 163321 26 33675 122568 21.55 156243 27 36299 121652 22.98 157951 28 34137 118249 22.40 152386 29 35183 123299 22.20 158482 30 33764 114691 22.74 148455 31 32089 117040 21.52 149129 32 31625 111152 22.15 142777 33 33870 111543 23.29 145413 34 33461 114540 22.61 148001 35 40083 121182 24.86 161265 36 34278 110687 23.65 144965 37 34164 114429 22.99 148593 38 31764 110812 22.28 142576 39 32791 108771 23.16 141562 40 34448 109227 23.98 143675 41 31411 104948 23.04 136359 42 31791 107207 22.87 138998 43 31844 106736 22.98 138580 44 30132 103420 22.56 133552 45 35434 108908 24.55 144342 46 29613 98504 23.11 128117 47 30159 98652 23.41 128811 48 29691 97028 23.43 126719 49 28808 99886 22.38 128694 50 27428 93606 22.66 121034 51 27785 92926 23.02 120711 52 28544 95237 23.06 123781 53 28837 91340 24.00 120177 54 27636 91612 23.18 119248 55 27336 89979 23.30 117315 56 26508 88049 23.14 114557 57 26883 87293 23.55 114176 58 26391 86575 23.36 112966 59 25639 83443 23.50 109082 60 26249 84057 23.80 110306 61 23716 82274 22.38 105990 62 23598 81565 22.44 105163 63 25161 79675 24.00 104836 64 23560 80478 22.65 104038 65 23043 75808 23.31 98851 66 24488 77057 24.12 101545 67 23008 77833 22.82 100841 68 24311 79380 23.45 103691 69 22391 76377 22.67 98768 70 22127 75810 22.59 97937 71 22708 70708 24.31 93416 72 21754 70693 23.53 92447 73 21666 72070 23.11 93736 74 20085 68729 22.61 88814 75 20405 68714 22.90 89119 76 20648 67284 23.48 87932 77 20394 67515 23.20 87909 78 20206 67695 22.99 87901 79 19340 66087 22.64 85427 80 18781 64237 22.62 83018 81 19229 64148 23.06 83377 82 19151 63591 23.15 82742 83 18894 61889 23.39 80783 84 20153 64726 23.74 84879 85 18422 62311 22.82 80733 86 17920 60953 22.72 78873 87 17894 59906 23.00 77800 88 17564 60021 22.64 77585 89 18367 59305 23.65 77672 90 18298 59118 23.64 77416 91 17421 58059 23.08 75480 92 16899 56865 22.91 73764 93 17328 56851 23.36 74179 94 17329 56619 23.43 73948 95 16879 55791 23.23 72670 96 16397 55320 22.86 71717 97 17925 56317 24.14 74242 98 15875 50965 23.75 66840 99 13832 0 100.00 13832 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50335 270209 15.70 320544 2 52518 274762 16.05 327280 3 49870 282552 15.00 332422 4 54014 294139 15.51 348153 5 4210 534194 0.78 538404 6 3226 641122 0.50 644348 7 2035 354325 0.57 356360 8 2041 380420 0.53 382461 9 1800 323766 0.55 325566 10 1816 311126 0.58 312942 11 2523 394130 0.64 396653 12 1917 326280 0.58 328197 13 2019 324552 0.62 326571 14 1981 318235 0.62 320216 15 1953 302130 0.64 304083 16 1858 284591 0.65 286449 17 2119 304305 0.69 306424 18 2159 271000 0.79 273159 19 1981 270503 0.73 272484 20 1921 267480 0.71 269401 21 2195 256246 0.85 258441 22 1974 275487 0.71 277461 23 2064 276587 0.74 278651 24 1801 250979 0.71 252780 25 1939 256767 0.75 258706 26 2039 266844 0.76 268883 27 1922 248797 0.77 250719 28 1923 237195 0.80 239118 29 1962 253501 0.77 255463 30 2099 248551 0.84 250650 31 1936 238303 0.81 240239 32 1890 243719 0.77 245609 33 2011 271898 0.73 273909 34 1949 237723 0.81 239672 35 2024 242267 0.83 244291 36 1930 241286 0.79 243216 37 1821 227290 0.79 229111 38 2013 232778 0.86 234791 39 1892 223676 0.84 225568 40 1916 219756 0.86 221672 41 2035 215992 0.93 218027 42 1966 204479 0.95 206445 43 2035 210143 0.96 212178 44 1752 211474 0.82 213226 45 1765 196069 0.89 197834 46 1881 198278 0.94 200159 47 1983 204174 0.96 206157 48 1935 195184 0.98 197119 49 1987 198766 0.99 200753 50 1964 195576 0.99 197540 51 1849 183544 1.00 185393 52 2072 182739 1.12 184811 53 2579 202101 1.26 204680 54 1867 185390 1.00 187257 55 1865 183240 1.01 185105 56 1754 183518 0.95 185272 57 1848 174720 1.05 176568 58 1584 174754 0.90 176338 59 1587 179177 0.88 180764 60 1384 169674 0.81 171058 61 1277 171105 0.74 172382 62 1314 173748 0.75 175062 63 1161 174954 0.66 176115 64 1147 161805 0.70 162952 65 1157 169072 0.68 170229 66 1121 156720 0.71 157841 67 1222 166347 0.73 167569 68 1137 163258 0.69 164395 69 1124 160409 0.70 161533 70 1146 158195 0.72 159341 71 1094 161741 0.67 162835 72 1062 150330 0.70 151392 73 1033 150638 0.68 151671 74 1056 155002 0.68 156058 75 1065 148936 0.71 150001 76 995 143962 0.69 144957 77 1037 149137 0.69 150174 78 1004 143429 0.70 144433 79 1100 143047 0.76 144147 80 869 139253 0.62 140122 81 959 134418 0.71 135377 82 975 133202 0.73 134177 83 974 135146 0.72 136120 84 937 130308 0.71 131245 85 1002 139506 0.71 140508 86 943 129873 0.72 130816 87 892 129363 0.68 130255 88 912 124472 0.73 125384 89 977 130852 0.74 131829 90 966 126948 0.76 127914 91 956 128253 0.74 129209 92 871 125199 0.69 126070 93 911 120100 0.75 121011 94 842 118964 0.70 119806 95 935 121361 0.76 122296 96 895 115550 0.77 116445 97 902 115386 0.78 116288 98 719 111443 0.64 112162 99 547 0 100.00 547 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 72954 375302 16.28 448256 2 60236 310826 16.23 371062 3 61445 319536 16.13 380981 4 61867 312573 16.52 374440 5 9039 596912 1.49 605951 6 9137 838432 1.08 847569 7 10521 1115387 0.93 1125908 8 10034 1105273 0.90 1115307 9 10521 1041817 1.00 1052338 10 10428 1068071 0.97 1078499 11 10325 1048125 0.98 1058450 12 9847 980466 0.99 990313 13 9817 1013452 0.96 1023269 14 10122 1023978 0.98 1034100 15 9832 1031137 0.94 1040969 16 9382 984934 0.94 994316 17 10024 986408 1.01 996432 18 9836 981374 0.99 991210 19 8833 924977 0.95 933810 20 10166 962781 1.04 972947 21 9155 912262 0.99 921417 22 9639 895464 1.06 905103 23 9178 878386 1.03 887564 24 8597 846276 1.01 854873 25 9599 847494 1.12 857093 26 8821 843738 1.03 852559 27 9368 881509 1.05 890877 28 8980 854673 1.04 863653 29 8816 838791 1.04 847607 30 9117 816120 1.10 825237 31 8764 807490 1.07 816254 32 8298 792264 1.04 800562 33 9007 779090 1.14 788097 34 8434 773769 1.08 782203 35 9142 794168 1.14 803310 36 8437 785294 1.06 793731 37 8530 774747 1.09 783277 38 9072 801459 1.12 810531 39 8737 750019 1.15 758756 40 8563 772360 1.10 780923 41 8578 743256 1.14 751834 42 8477 747456 1.12 755933 43 8588 720986 1.18 729574 44 7831 720808 1.07 728639 45 8329 717861 1.15 726190 46 8208 724370 1.12 732578 47 7829 715558 1.08 723387 48 7907 699720 1.12 707627 49 7814 701396 1.10 709210 50 7697 696056 1.09 703753 51 7689 681426 1.12 689115 52 7491 649709 1.14 657200 53 7558 649612 1.15 657170 54 7080 637462 1.10 644542 55 7017 647283 1.07 654300 56 7353 633182 1.15 640535 57 6922 643737 1.06 650659 58 6592 627794 1.04 634386 59 6656 610208 1.08 616864 60 6508 623048 1.03 629556 61 6512 599885 1.07 606397 62 6160 595316 1.02 601476 63 6039 592159 1.01 598198 64 6114 576468 1.05 582582 65 5834 580509 0.99 586343 66 5967 564393 1.05 570360 67 5584 561253 0.99 566837 68 5848 576109 1.00 581957 69 5930 561369 1.05 567299 70 5558 548791 1.00 554349 71 5512 543041 1.00 548553 72 5688 536989 1.05 542677 73 5520 533406 1.02 538926 74 5281 534100 0.98 539381 75 5561 531240 1.04 536801 76 5227 514724 1.01 519951 77 5414 510876 1.05 516290 78 5362 513557 1.03 518919 79 5314 518932 1.01 524246 80 5229 501264 1.03 506493 81 5300 498318 1.05 503618 82 5176 493970 1.04 499146 83 4998 490154 1.01 495152 84 5203 485618 1.06 490821 85 4961 478495 1.03 483456 86 4877 478022 1.01 482899 87 4734 470755 1.00 475489 88 4712 460795 1.01 465507 89 4771 457833 1.03 462604 90 4874 456818 1.06 461692 91 4461 454849 0.97 459310 92 4456 449700 0.98 454156 93 4519 443490 1.01 448009 94 4437 435152 1.01 439589 95 4391 429013 1.01 433404 96 4270 422998 1.00 427268 97 4113 421194 0.97 425307 98 3611 398271 0.90 401882 99 2608 0 100.00 2608