EPI-143_S37_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10584800 lines in total Total number of methylation call strings processed: 21169600 Final Cytosine Methylation Report ================================= Total number of C's analysed: 247046085 Total methylated C's in CpG context: 8640655 Total methylated C's in CHG context: 1218039 Total methylated C's in CHH context: 2998211 Total C to T conversions in CpG context: 25088052 Total C to T conversions in CHG context: 50493706 Total C to T conversions in CHH context: 158607422 C methylated in CpG context: 25.6% C methylated in CHG context: 2.4% C methylated in CHH context: 1.9%