CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 200412 343187 36.87 543599 2 182632 363606 33.43 546238 3 164328 315860 34.22 480188 4 162202 237438 40.59 399640 5 154665 202053 43.36 356718 6 152456 174616 46.61 327072 7 167895 166909 50.15 334804 8 78177 194453 28.68 272630 9 71174 177202 28.66 248376 10 70418 167726 29.57 238144 11 72366 171683 29.65 244049 12 70224 175758 28.55 245982 13 68332 178845 27.64 247177 14 65012 177188 26.84 242200 15 62889 177716 26.14 240605 16 58607 174205 25.17 232812 17 54934 168782 24.56 223716 18 57915 171806 25.21 229721 19 56919 174360 24.61 231279 20 57162 176299 24.48 233461 21 57818 177899 24.53 235717 22 56994 175710 24.49 232704 23 56274 173914 24.45 230188 24 55396 172738 24.28 228134 25 54113 173261 23.80 227374 26 54743 170549 24.30 225292 27 54803 175991 23.75 230794 28 56461 173783 24.52 230244 29 54689 177796 23.52 232485 30 53395 173916 23.49 227311 31 54278 171984 23.99 226262 32 53894 168391 24.25 222285 33 54070 169874 24.14 223944 34 54879 168947 24.52 223826 35 53722 168884 24.13 222606 36 52921 171278 23.60 224199 37 51799 167991 23.57 219790 38 51760 168386 23.51 220146 39 53223 169916 23.85 223139 40 52941 168041 23.96 220982 41 52935 169186 23.83 222121 42 54023 172069 23.89 226092 43 53211 170524 23.78 223735 44 52599 168573 23.78 221172 45 53837 168215 24.25 222052 46 53933 169907 24.09 223840 47 53697 167563 24.27 221260 48 53221 168418 24.01 221639 49 54823 167928 24.61 222751 50 52674 170560 23.60 223234 51 53345 169721 23.91 223066 52 53112 176128 23.17 229240 53 52217 168885 23.62 221102 54 51306 167305 23.47 218611 55 50899 163262 23.77 214161 56 50680 161716 23.86 212396 57 51736 162996 24.09 214732 58 52299 164502 24.12 216801 59 52863 163709 24.41 216572 60 51831 165263 23.87 217094 61 52472 163120 24.34 215592 62 51032 165304 23.59 216336 63 50720 163412 23.69 214132 64 50508 163128 23.64 213636 65 50775 160479 24.04 211254 66 51261 161644 24.08 212905 67 50712 157247 24.39 207959 68 49956 157637 24.06 207593 69 48803 155769 23.86 204572 70 48579 155688 23.78 204267 71 47782 155171 23.54 202953 72 48046 154131 23.76 202177 73 47518 151846 23.83 199364 74 46962 150425 23.79 197387 75 45695 150500 23.29 196195 76 45902 149087 23.54 194989 77 46550 147948 23.93 194498 78 46104 148877 23.65 194981 79 45426 146754 23.64 192180 80 44254 146064 23.25 190318 81 44195 144225 23.46 188420 82 43302 143905 23.13 187207 83 43702 144698 23.20 188400 84 43789 145748 23.10 189537 85 43336 142554 23.31 185890 86 42125 141093 22.99 183218 87 41653 139918 22.94 181571 88 41848 140529 22.95 182377 89 40934 137314 22.96 178248 90 41075 137968 22.94 179043 91 40849 135699 23.14 176548 92 40172 135606 22.85 175778 93 39945 135120 22.82 175065 94 39954 133411 23.05 173365 95 39729 132236 23.10 171965 96 39102 134505 22.52 173607 97 38043 128886 22.79 166929 98 35364 121365 22.56 156729 99 28075 96164 22.60 124239 100 36495 122480 22.96 158975 101 33094 119343 21.71 152437 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 291680 345799 45.76 637479 2 172546 304114 36.20 476660 3 65209 295878 18.06 361087 4 30471 314804 8.83 345275 5 18142 294787 5.80 312929 6 15909 281793 5.34 297702 7 11484 361202 3.08 372686 8 4796 392898 1.21 397694 9 4044 364397 1.10 368441 10 3847 343353 1.11 347200 11 4174 344857 1.20 349031 12 4079 346388 1.16 350467 13 3721 332431 1.11 336152 14 3371 332421 1.00 335792 15 3263 340280 0.95 343543 16 2987 339496 0.87 342483 17 3292 334422 0.97 337714 18 3171 334433 0.94 337604 19 2764 334097 0.82 336861 20 2916 351606 0.82 354522 21 2786 356733 0.77 359519 22 2925 351205 0.83 354130 23 3096 355499 0.86 358595 24 2829 357760 0.78 360589 25 2954 346451 0.85 349405 26 3368 349347 0.95 352715 27 2824 355283 0.79 358107 28 2912 350834 0.82 353746 29 3232 356418 0.90 359650 30 2816 359492 0.78 362308 31 2739 352279 0.77 355018 32 2870 354621 0.80 357491 33 2834 355682 0.79 358516 34 2766 349720 0.78 352486 35 3028 352859 0.85 355887 36 2867 353450 0.80 356317 37 2797 345868 0.80 348665 38 3035 350242 0.86 353277 39 2937 349530 0.83 352467 40 2714 348300 0.77 351014 41 2885 348258 0.82 351143 42 2800 351101 0.79 353901 43 2750 345664 0.79 348414 44 2646 350851 0.75 353497 45 2835 349542 0.80 352377 46 2769 347146 0.79 349915 47 2919 348070 0.83 350989 48 2766 355277 0.77 358043 49 2795 345896 0.80 348691 50 3012 347762 0.86 350774 51 2909 352473 0.82 355382 52 2890 349443 0.82 352333 53 2978 348340 0.85 351318 54 3159 352444 0.89 355603 55 3017 346811 0.86 349828 56 3085 350269 0.87 353354 57 3030 348138 0.86 351168 58 3598 346663 1.03 350261 59 3444 349595 0.98 353039 60 3390 353436 0.95 356826 61 3378 347040 0.96 350418 62 3597 349804 1.02 353401 63 3493 347009 1.00 350502 64 3405 345010 0.98 348415 65 3922 343733 1.13 347655 66 3559 338789 1.04 342348 67 3594 331444 1.07 335038 68 3727 333904 1.10 337631 69 3502 333815 1.04 337317 70 3366 329406 1.01 332772 71 3442 328581 1.04 332023 72 3456 328058 1.04 331514 73 3425 323115 1.05 326540 74 3691 320471 1.14 324162 75 3588 321293 1.10 324881 76 3256 315420 1.02 318676 77 3553 317393 1.11 320946 78 3306 312093 1.05 315399 79 3178 307010 1.02 310188 80 3282 306243 1.06 309525 81 3333 303551 1.09 306884 82 3275 298796 1.08 302071 83 3330 304276 1.08 307606 84 3298 304368 1.07 307666 85 3439 298828 1.14 302267 86 3390 301239 1.11 304629 87 3348 299714 1.10 303062 88 3219 293119 1.09 296338 89 3488 293009 1.18 296497 90 3403 292255 1.15 295658 91 3422 287354 1.18 290776 92 3570 288828 1.22 292398 93 3689 287305 1.27 290994 94 3377 282419 1.18 285796 95 3628 281068 1.27 284696 96 3721 279442 1.31 283163 97 3461 255129 1.34 258590 98 3321 235170 1.39 238491 99 2231 152581 1.44 154812 100 2490 154298 1.59 156788 101 4533 251018 1.77 255551 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 254460 377102 40.29 631562 2 121522 398389 23.37 519911 3 59410 514596 10.35 574006 4 50545 565968 8.20 616513 5 44611 678521 6.17 723132 6 35525 754087 4.50 789612 7 30426 970519 3.04 1000945 8 19733 1046979 1.85 1066712 9 15391 954956 1.59 970347 10 15588 933819 1.64 949407 11 17974 937599 1.88 955573 12 16090 962728 1.64 978818 13 17645 980491 1.77 998136 14 18241 1004958 1.78 1023199 15 16270 1029255 1.56 1045525 16 16291 1047669 1.53 1063960 17 17883 1053799 1.67 1071682 18 16280 1093511 1.47 1109791 19 15949 1115260 1.41 1131209 20 17753 1150312 1.52 1168065 21 16206 1148756 1.39 1164962 22 17199 1149183 1.47 1166382 23 18615 1147863 1.60 1166478 24 16258 1152893 1.39 1169151 25 17193 1160334 1.46 1177527 26 18105 1170081 1.52 1188186 27 16368 1174286 1.37 1190654 28 16175 1179065 1.35 1195240 29 18162 1174696 1.52 1192858 30 16099 1159960 1.37 1176059 31 16389 1144354 1.41 1160743 32 17549 1153831 1.50 1171380 33 15987 1151415 1.37 1167402 34 17697 1160120 1.50 1177817 35 18234 1152949 1.56 1171183 36 16345 1162038 1.39 1178383 37 16160 1155912 1.38 1172072 38 18305 1160408 1.55 1178713 39 16250 1155386 1.39 1171636 40 16707 1155035 1.43 1171742 41 18473 1159873 1.57 1178346 42 16885 1169158 1.42 1186043 43 17381 1154811 1.48 1172192 44 17783 1162928 1.51 1180711 45 16882 1156563 1.44 1173445 46 16771 1158518 1.43 1175289 47 17464 1157276 1.49 1174740 48 15852 1156323 1.35 1172175 49 16085 1142662 1.39 1158747 50 17369 1142141 1.50 1159510 51 15933 1131005 1.39 1146938 52 16514 1130457 1.44 1146971 53 17439 1123440 1.53 1140879 54 15766 1128886 1.38 1144652 55 16335 1131015 1.42 1147350 56 17425 1127696 1.52 1145121 57 15635 1142195 1.35 1157830 58 17660 1129242 1.54 1146902 59 17948 1141814 1.55 1159762 60 15947 1124952 1.40 1140899 61 16865 1117255 1.49 1134120 62 17463 1109935 1.55 1127398 63 16030 1097907 1.44 1113937 64 16822 1093974 1.51 1110796 65 17066 1093070 1.54 1110136 66 15799 1086880 1.43 1102679 67 15945 1079264 1.46 1095209 68 16826 1076021 1.54 1092847 69 15696 1069259 1.45 1084955 70 15642 1064785 1.45 1080427 71 16889 1059039 1.57 1075928 72 15526 1056113 1.45 1071639 73 16754 1044929 1.58 1061683 74 16739 1044577 1.58 1061316 75 15302 1035809 1.46 1051111 76 15348 1033028 1.46 1048376 77 16673 1024643 1.60 1041316 78 14503 1017426 1.41 1031929 79 15092 1013092 1.47 1028184 80 16315 1007522 1.59 1023837 81 14966 996417 1.48 1011383 82 15440 988790 1.54 1004230 83 16329 990525 1.62 1006854 84 14797 978092 1.49 992889 85 14575 966689 1.49 981264 86 15158 961371 1.55 976529 87 13963 957249 1.44 971212 88 13982 953103 1.45 967085 89 15271 943702 1.59 958973 90 13942 939158 1.46 953100 91 14334 931846 1.51 946180 92 15004 927524 1.59 942528 93 13766 920171 1.47 933937 94 14034 911785 1.52 925819 95 15219 902185 1.66 917404 96 13563 886896 1.51 900459 97 13597 864228 1.55 877825 98 13900 803762 1.70 817662 99 8771 558470 1.55 567241 100 9361 501362 1.83 510723 101 13486 808562 1.64 822048 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 123747 170341 42.08 294088 2 111611 155099 41.85 266710 3 119679 171423 41.11 291102 4 113674 194473 36.89 308147 5 48968 241407 16.86 290375 6 28743 129275 18.19 158018 7 25792 139021 15.65 164813 8 27459 132280 17.19 159739 9 24601 116397 17.45 140998 10 27499 129743 17.49 157242 11 28952 125662 18.73 154614 12 28115 121988 18.73 150103 13 29377 119024 19.80 148401 14 30529 120191 20.26 150720 15 29556 110901 21.04 140457 16 28507 108572 20.80 137079 17 33900 117288 22.42 151188 18 33316 112776 22.80 146092 19 31474 108331 22.51 139805 20 29933 106160 21.99 136093 21 31235 105434 22.85 136669 22 30771 107310 22.28 138081 23 28969 103157 21.93 132126 24 27784 99978 21.75 127762 25 30719 104509 22.72 135228 26 28681 100109 22.27 128790 27 30909 100565 23.51 131474 28 28525 97167 22.69 125692 29 29178 101397 22.35 130575 30 28318 94165 23.12 122483 31 27251 95869 22.13 123120 32 26727 90656 22.77 117383 33 28766 91666 23.89 120432 34 28218 94091 23.07 122309 35 33100 99929 24.88 133029 36 28739 91133 23.97 119872 37 28499 92661 23.52 121160 38 26458 90366 22.65 116824 39 27288 88130 23.64 115418 40 28930 88813 24.57 117743 41 26511 86320 23.50 112831 42 26792 88563 23.23 115355 43 26792 86636 23.62 113428 44 25239 84309 23.04 109548 45 29427 89340 24.78 118767 46 24944 80698 23.61 105642 47 25149 81108 23.67 106257 48 24521 79396 23.60 103917 49 24069 81787 22.74 105856 50 22797 76361 22.99 99158 51 23459 75194 23.78 98653 52 23896 76876 23.71 100772 53 23806 75871 23.88 99677 54 23067 74702 23.59 97769 55 23401 74497 23.90 97898 56 21952 72640 23.21 94592 57 22405 70853 24.02 93258 58 21909 71158 23.54 93067 59 21402 67876 23.97 89278 60 21767 68669 24.07 90436 61 19397 67090 22.43 86487 62 19708 66668 22.82 86376 63 20953 65117 24.34 86070 64 20018 64523 23.68 84541 65 19406 61793 23.90 81199 66 20371 63976 24.15 84347 67 19064 63206 23.17 82270 68 20032 64512 23.69 84544 69 18833 61659 23.40 80492 70 18350 61440 23.00 79790 71 18762 57870 24.48 76632 72 18160 57287 24.07 75447 73 17760 58163 23.39 75923 74 16726 55929 23.02 72655 75 16895 56261 23.09 73156 76 16891 54782 23.57 71673 77 16795 53876 23.77 70671 78 16739 54875 23.37 71614 79 16165 53252 23.29 69417 80 15583 52151 23.01 67734 81 15666 52072 23.13 67738 82 15774 51976 23.28 67750 83 15905 50026 24.12 65931 84 16479 52232 23.98 68711 85 15232 50610 23.13 65842 86 15007 49638 23.21 64645 87 14646 48583 23.16 63229 88 14640 48752 23.09 63392 89 15302 48326 24.05 63628 90 15243 47341 24.36 62584 91 14529 46802 23.69 61331 92 13858 45815 23.22 59673 93 14261 46449 23.49 60710 94 14436 46025 23.88 60461 95 14312 44933 24.16 59245 96 13733 44532 23.57 58265 97 14444 45753 23.99 60197 98 13079 41077 24.15 54156 99 11728 0 100.00 11728 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42693 227672 15.79 270365 2 44777 231418 16.21 276195 3 42167 236435 15.14 278602 4 46567 247149 15.85 293716 5 3672 448923 0.81 452595 6 2697 538379 0.50 541076 7 1752 295829 0.59 297581 8 1742 317729 0.55 319471 9 1664 270595 0.61 272259 10 1582 260369 0.60 261951 11 2105 329066 0.64 331171 12 1740 272701 0.63 274441 13 1721 271521 0.63 273242 14 1699 266045 0.63 267744 15 1677 252007 0.66 253684 16 1613 237859 0.67 239472 17 1762 255108 0.69 256870 18 1957 227549 0.85 229506 19 1650 226369 0.72 228019 20 1706 223715 0.76 225421 21 2033 214488 0.94 216521 22 1794 230438 0.77 232232 23 1658 230350 0.71 232008 24 1626 210701 0.77 212327 25 1683 214681 0.78 216364 26 1890 222823 0.84 224713 27 1677 208030 0.80 209707 28 1612 199725 0.80 201337 29 1663 212265 0.78 213928 30 1810 206297 0.87 208107 31 1626 200368 0.80 201994 32 1777 204136 0.86 205913 33 1782 226034 0.78 227816 34 1566 198217 0.78 199783 35 1743 202202 0.85 203945 36 1662 200263 0.82 201925 37 1506 189537 0.79 191043 38 1670 194471 0.85 196141 39 1578 187543 0.83 189121 40 1675 181743 0.91 183418 41 1758 180591 0.96 182349 42 1736 169410 1.01 171146 43 1845 174398 1.05 176243 44 1585 176501 0.89 178086 45 1571 162812 0.96 164383 46 1564 165016 0.94 166580 47 1622 169046 0.95 170668 48 1608 162469 0.98 164077 49 1634 165556 0.98 167190 50 1757 161772 1.07 163529 51 1637 151655 1.07 153292 52 1731 151495 1.13 153226 53 2155 166415 1.28 168570 54 1673 154078 1.07 155751 55 1631 152479 1.06 154110 56 1504 152951 0.97 154455 57 1688 146309 1.14 147997 58 1431 145130 0.98 146561 59 1327 147979 0.89 149306 60 1180 141351 0.83 142531 61 1066 140983 0.75 142049 62 1108 143675 0.77 144783 63 1068 145788 0.73 146856 64 983 133876 0.73 134859 65 1054 140090 0.75 141144 66 943 129142 0.72 130085 67 1013 137573 0.73 138586 68 962 135619 0.70 136581 69 959 133529 0.71 134488 70 906 132304 0.68 133210 71 987 133487 0.73 134474 72 967 124585 0.77 125552 73 894 124789 0.71 125683 74 922 128503 0.71 129425 75 935 122751 0.76 123686 76 828 118379 0.69 119207 77 914 124121 0.73 125035 78 872 119325 0.73 120197 79 910 118455 0.76 119365 80 849 116075 0.73 116924 81 838 110806 0.75 111644 82 790 110158 0.71 110948 83 828 111744 0.74 112572 84 845 107157 0.78 108002 85 813 115020 0.70 115833 86 804 107145 0.74 107949 87 772 106422 0.72 107194 88 802 102071 0.78 102873 89 846 108068 0.78 108914 90 815 104811 0.77 105626 91 819 105556 0.77 106375 92 749 103263 0.72 104012 93 841 98886 0.84 99727 94 788 98874 0.79 99662 95 745 100584 0.74 101329 96 801 95469 0.83 96270 97 764 94465 0.80 95229 98 598 90389 0.66 90987 99 472 0 100.00 472 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 64165 316719 16.85 380884 2 53356 262787 16.88 316143 3 54711 269068 16.90 323779 4 55139 264723 17.24 319862 5 8820 504188 1.72 513008 6 9449 704038 1.32 713487 7 10320 937263 1.09 947583 8 9450 930066 1.01 939516 9 10609 873661 1.20 884270 10 10127 895599 1.12 905726 11 10149 878999 1.14 889148 12 9778 821940 1.18 831718 13 9508 846858 1.11 856366 14 9633 853976 1.12 863609 15 9493 859641 1.09 869134 16 8726 821320 1.05 830046 17 9575 823658 1.15 833233 18 9329 820427 1.12 829756 19 8423 774324 1.08 782747 20 9603 804982 1.18 814585 21 9002 762438 1.17 771440 22 9294 748412 1.23 757706 23 8818 731341 1.19 740159 24 8278 706031 1.16 714309 25 9277 707051 1.30 716328 26 8313 703714 1.17 712027 27 9074 735218 1.22 744292 28 8463 713253 1.17 721716 29 8460 700900 1.19 709360 30 8859 683264 1.28 692123 31 8476 673131 1.24 681607 32 8061 661416 1.20 669477 33 8776 648734 1.33 657510 34 8181 643680 1.26 651861 35 8657 660273 1.29 668930 36 8169 655326 1.23 663495 37 8120 645474 1.24 653594 38 8771 667153 1.30 675924 39 8484 625400 1.34 633884 40 8098 643869 1.24 651967 41 8406 617009 1.34 625415 42 8255 622328 1.31 630583 43 8167 598116 1.35 606283 44 7503 600142 1.23 607645 45 8049 594062 1.34 602111 46 7750 602694 1.27 610444 47 7340 594066 1.22 601406 48 7740 580788 1.32 588528 49 7538 582658 1.28 590196 50 7381 576956 1.26 584337 51 7469 564712 1.31 572181 52 6969 537592 1.28 544561 53 7100 539112 1.30 546212 54 6813 525124 1.28 531937 55 6730 534322 1.24 541052 56 6713 525835 1.26 532548 57 6659 531353 1.24 538012 58 6201 520322 1.18 526523 59 6219 503309 1.22 509528 60 6053 515408 1.16 521461 61 6083 495691 1.21 501774 62 6004 490054 1.21 496058 63 5912 488406 1.20 494318 64 5767 476459 1.20 482226 65 5549 479715 1.14 485264 66 5526 466323 1.17 471849 67 5323 464358 1.13 469681 68 5492 475903 1.14 481395 69 5634 462304 1.20 467938 70 5393 453613 1.17 459006 71 5204 448426 1.15 453630 72 5501 443415 1.23 448916 73 5322 439213 1.20 444535 74 4862 438333 1.10 443195 75 5275 437577 1.19 442852 76 4938 424525 1.15 429463 77 5334 422004 1.25 427338 78 5071 421500 1.19 426571 79 4833 427155 1.12 431988 80 5031 412135 1.21 417166 81 5231 411649 1.25 416880 82 5039 406050 1.23 411089 83 4713 402601 1.16 407314 84 4952 401494 1.22 406446 85 4772 393607 1.20 398379 86 4526 393160 1.14 397686 87 4612 387898 1.18 392510 88 4401 379583 1.15 383984 89 4430 376828 1.16 381258 90 4234 376846 1.11 381080 91 4241 374703 1.12 378944 92 4197 369952 1.12 374149 93 4215 364161 1.14 368376 94 4189 356179 1.16 360368 95 4091 353415 1.14 357506 96 4015 348036 1.14 352051 97 3733 346447 1.07 350180 98 3250 325028 0.99 328278 99 2377 0 100.00 2377