Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-143_S37_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-143_S37_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 21160872
Paired-end alignments with a unique best hit 12858471
Pairs without alignments under any condition 4767792
Pairs that did not map uniquely 3534609
Genomic sequence context not extractable (edges of chromosomes) 34027

Cytosine Methylation

Total C's analysed 403943120
Methylated C's in CpG context 12645113
Methylated C's in CHG context 1885576
Methylated C's in CHH context 4489602
Methylated C's in Unknown context 138817
Unmethylated C's in CpG context 44148702
Unmethylated C's in CHG context 84520212
Unmethylated C's in CHH context 256253915
Unmethylated C's in Unknown context 1792166
Percentage methylation (CpG context) 22.3%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6385476 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6438968 original bottom strand