CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 232243 453342 33.88 685585 2 209875 477362 30.54 687237 3 189167 415073 31.31 604240 4 188917 314454 37.53 503371 5 179406 261118 40.73 440524 6 178177 226353 44.05 404530 7 196888 216909 47.58 413797 8 94707 247416 27.68 342123 9 86200 224162 27.77 310362 10 86393 215972 28.57 302365 11 90055 219124 29.13 309179 12 87020 226946 27.72 313966 13 85293 233284 26.77 318577 14 80688 230105 25.96 310793 15 77646 232128 25.07 309774 16 72318 226960 24.16 299278 17 68221 220160 23.66 288381 18 70091 224597 23.78 294688 19 69305 228259 23.29 297564 20 70295 230072 23.40 300367 21 70770 233370 23.27 304140 22 68885 229833 23.06 298718 23 68456 227979 23.09 296435 24 67180 227377 22.81 294557 25 65528 226142 22.47 291670 26 66105 222120 22.94 288225 27 66385 229902 22.41 296287 28 67437 227235 22.89 294672 29 65452 233507 21.89 298959 30 64636 229450 21.98 294086 31 65977 224567 22.71 290544 32 64816 220218 22.74 285034 33 65108 222650 22.63 287758 34 66515 221517 23.09 288032 35 64733 220800 22.67 285533 36 64333 223714 22.33 288047 37 63127 219824 22.31 282951 38 62625 220978 22.08 283603 39 64686 222935 22.49 287621 40 65055 220916 22.75 285971 41 64571 221455 22.58 286026 42 65749 224605 22.64 290354 43 65266 223642 22.59 288908 44 64416 220882 22.58 285298 45 64662 220789 22.65 285451 46 65735 223053 22.76 288788 47 65353 219696 22.93 285049 48 64794 220764 22.69 285558 49 65761 219576 23.05 285337 50 63439 224227 22.05 287666 51 64397 221527 22.52 285924 52 64989 231323 21.93 296312 53 63529 219295 22.46 282824 54 61894 218981 22.04 280875 55 61670 212822 22.47 274492 56 61423 211954 22.47 273377 57 63206 214275 22.78 277481 58 63579 214543 22.86 278122 59 64211 213579 23.11 277790 60 62769 215415 22.56 278184 61 63664 212692 23.04 276356 62 62126 214765 22.44 276891 63 61730 212117 22.54 273847 64 60826 210908 22.38 271734 65 61827 207083 22.99 268910 66 61887 207427 22.98 269314 67 61250 204080 23.08 265330 68 59931 203645 22.74 263576 69 59272 201392 22.74 260664 70 59294 200871 22.79 260165 71 58303 197860 22.76 256163 72 57739 197954 22.58 255693 73 57424 195404 22.71 252828 74 56456 193084 22.62 249540 75 55212 191914 22.34 247126 76 54645 190466 22.29 245111 77 55464 188961 22.69 244425 78 54845 188011 22.58 242856 79 53833 185691 22.47 239524 80 52465 185364 22.06 237829 81 52651 183225 22.32 235876 82 50598 182314 21.72 232912 83 51613 182359 22.06 233972 84 51640 181925 22.11 233565 85 51337 179116 22.28 230453 86 49359 176910 21.81 226269 87 48574 175809 21.65 224383 88 48618 174756 21.77 223374 89 47950 171817 21.82 219767 90 47999 172686 21.75 220685 91 47992 168490 22.17 216482 92 46423 168293 21.62 214716 93 46308 167854 21.62 214162 94 46132 165213 21.83 211345 95 45647 164069 21.77 209716 96 45963 166616 21.62 212579 97 43832 159975 21.51 203807 98 40528 150364 21.23 190892 99 32540 118271 21.58 150811 100 41957 150447 21.81 192404 101 38638 147519 20.76 186157 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 366972 456648 44.56 823620 2 218475 408171 34.86 626646 3 87883 395169 18.19 483052 4 38028 407158 8.54 445186 5 22214 381169 5.51 403383 6 17747 374435 4.53 392182 7 13776 463815 2.88 477591 8 5922 495416 1.18 501338 9 4933 459118 1.06 464051 10 4888 440240 1.10 445128 11 5116 441417 1.15 446533 12 4990 446355 1.11 451345 13 4407 425268 1.03 429675 14 4071 422412 0.95 426483 15 3970 434419 0.91 438389 16 3554 431677 0.82 435231 17 3540 426526 0.82 430066 18 3631 427668 0.84 431299 19 3334 428150 0.77 431484 20 3551 446885 0.79 450436 21 3334 455342 0.73 458676 22 3451 449666 0.76 453117 23 3591 455775 0.78 459366 24 3359 459950 0.73 463309 25 3375 444759 0.75 448134 26 3841 448813 0.85 452654 27 3338 455385 0.73 458723 28 3415 452100 0.75 455515 29 3630 458388 0.79 462018 30 3325 462044 0.71 465369 31 3422 453511 0.75 456933 32 3389 455301 0.74 458690 33 3432 454281 0.75 457713 34 3337 450302 0.74 453639 35 3575 454391 0.78 457966 36 3356 455075 0.73 458431 37 3373 444191 0.75 447564 38 3546 449134 0.78 452680 39 3484 448045 0.77 451529 40 3451 446432 0.77 449883 41 3484 447380 0.77 450864 42 3359 450297 0.74 453656 43 3371 444343 0.75 447714 44 3445 450213 0.76 453658 45 3416 449686 0.75 453102 46 3430 444887 0.77 448317 47 3501 447279 0.78 450780 48 3462 453123 0.76 456585 49 3496 444304 0.78 447800 50 3547 445640 0.79 449187 51 3553 449813 0.78 453366 52 3613 446652 0.80 450265 53 3554 444765 0.79 448319 54 3670 450999 0.81 454669 55 3816 444384 0.85 448200 56 3768 448673 0.83 452441 57 3977 447880 0.88 451857 58 4640 443437 1.04 448077 59 4297 445504 0.96 449801 60 4365 451581 0.96 455946 61 4368 444624 0.97 448992 62 4644 445775 1.03 450419 63 4531 439749 1.02 444280 64 4581 439166 1.03 443747 65 4847 435252 1.10 440099 66 4585 428949 1.06 433534 67 4568 419549 1.08 424117 68 4751 421996 1.11 426747 69 4549 421272 1.07 425821 70 4509 412981 1.08 417490 71 4439 413361 1.06 417800 72 4490 410528 1.08 415018 73 4472 404272 1.09 408744 74 4551 402532 1.12 407083 75 4365 402263 1.07 406628 76 4215 392777 1.06 396992 77 4355 393674 1.09 398029 78 4342 387637 1.11 391979 79 4186 382660 1.08 386846 80 4143 380378 1.08 384521 81 4162 376955 1.09 381117 82 4222 371004 1.13 375226 83 4192 374205 1.11 378397 84 4270 374153 1.13 378423 85 4167 366465 1.12 370632 86 4289 370922 1.14 375211 87 4218 367394 1.14 371612 88 4137 359932 1.14 364069 89 4181 359556 1.15 363737 90 4194 358101 1.16 362295 91 4212 350765 1.19 354977 92 4428 351101 1.25 355529 93 4519 349667 1.28 354186 94 4471 341979 1.29 346450 95 4504 341613 1.30 346117 96 4487 337741 1.31 342228 97 4385 308651 1.40 313036 98 3909 282862 1.36 286771 99 2688 183992 1.44 186680 100 2885 186556 1.52 189441 101 5833 303388 1.89 309221 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 335791 516664 39.39 852455 2 154864 542382 22.21 697246 3 70335 674869 9.44 745204 4 55138 745226 6.89 800364 5 47902 890534 5.10 938436 6 38218 983293 3.74 1021511 7 34242 1229943 2.71 1264185 8 21201 1321119 1.58 1342320 9 17042 1207491 1.39 1224533 10 16846 1182583 1.40 1199429 11 19131 1183877 1.59 1203008 12 17193 1204992 1.41 1222185 13 18571 1227894 1.49 1246465 14 19210 1257814 1.50 1277024 15 17348 1289435 1.33 1306783 16 17098 1321759 1.28 1338857 17 18723 1328055 1.39 1346778 18 16877 1378454 1.21 1395331 19 17094 1411312 1.20 1428406 20 18902 1453034 1.28 1471936 21 17228 1461240 1.17 1478468 22 18097 1464650 1.22 1482747 23 19086 1463922 1.29 1483008 24 17210 1467528 1.16 1484738 25 18087 1480225 1.21 1498312 26 18951 1494516 1.25 1513467 27 17462 1498633 1.15 1516095 28 17202 1500215 1.13 1517417 29 18856 1496623 1.24 1515479 30 16985 1482230 1.13 1499215 31 17137 1461186 1.16 1478323 32 18300 1472921 1.23 1491221 33 17007 1470381 1.14 1487388 34 18496 1481204 1.23 1499700 35 19007 1472468 1.27 1491475 36 17394 1480585 1.16 1497979 37 16829 1474746 1.13 1491575 38 18931 1479760 1.26 1498691 39 17137 1472438 1.15 1489575 40 17640 1475587 1.18 1493227 41 19214 1480762 1.28 1499976 42 17606 1493252 1.17 1510858 43 18462 1475425 1.24 1493887 44 18623 1483740 1.24 1502363 45 17690 1472449 1.19 1490139 46 17558 1477367 1.17 1494925 47 18320 1473182 1.23 1491502 48 16729 1475621 1.12 1492350 49 17003 1456258 1.15 1473261 50 18389 1454698 1.25 1473087 51 16561 1439343 1.14 1455904 52 17562 1438728 1.21 1456290 53 18216 1430855 1.26 1449071 54 16690 1431401 1.15 1448091 55 17192 1434048 1.18 1451240 56 18103 1428193 1.25 1446296 57 16674 1442850 1.14 1459524 58 18447 1425860 1.28 1444307 59 18932 1438669 1.30 1457601 60 16761 1416004 1.17 1432765 61 17776 1406139 1.25 1423915 62 17975 1392992 1.27 1410967 63 16849 1376190 1.21 1393039 64 17238 1367084 1.25 1384322 65 17951 1363810 1.30 1381761 66 16792 1352215 1.23 1369007 67 16577 1344040 1.22 1360617 68 17335 1336785 1.28 1354120 69 16323 1330032 1.21 1346355 70 16167 1322711 1.21 1338878 71 17370 1312013 1.31 1329383 72 16298 1307685 1.23 1323983 73 16932 1289790 1.30 1306722 74 17172 1286154 1.32 1303326 75 16012 1275970 1.24 1291982 76 15904 1266757 1.24 1282661 77 16932 1257983 1.33 1274915 78 15262 1248481 1.21 1263743 79 15495 1238640 1.24 1254135 80 16513 1229527 1.33 1246040 81 15677 1213836 1.28 1229513 82 15724 1202608 1.29 1218332 83 16121 1203366 1.32 1219487 84 15068 1189596 1.25 1204664 85 14920 1174594 1.25 1189514 86 15314 1163214 1.30 1178528 87 14391 1159280 1.23 1173671 88 14337 1153937 1.23 1168274 89 15238 1141331 1.32 1156569 90 14397 1133071 1.25 1147468 91 14481 1119397 1.28 1133878 92 15011 1118924 1.32 1133935 93 14183 1107146 1.26 1121329 94 14258 1094464 1.29 1108722 95 15092 1083333 1.37 1098425 96 14206 1062737 1.32 1076943 97 13891 1033118 1.33 1047009 98 13730 958869 1.41 972599 99 9196 667322 1.36 676518 100 9598 596799 1.58 606397 101 13719 964189 1.40 977908 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 142113 207093 40.70 349206 2 127836 191300 40.06 319136 3 137385 211936 39.33 349321 4 130975 238614 35.44 369589 5 54931 296490 15.63 351421 6 32398 161586 16.70 193984 7 28959 174186 14.26 203145 8 31395 164382 16.04 195777 9 27948 144652 16.19 172600 10 31084 160291 16.24 191375 11 32893 154788 17.53 187681 12 32174 151145 17.55 183319 13 33122 146005 18.49 179127 14 34059 148961 18.61 183020 15 33227 136498 19.58 169725 16 32125 133546 19.39 165671 17 38521 144547 21.04 183068 18 37806 137008 21.63 174814 19 35420 133297 20.99 168717 20 33567 130227 20.49 163794 21 35355 130013 21.38 165368 22 34128 132356 20.50 166484 23 32569 126956 20.42 159525 24 31822 121921 20.70 153743 25 34472 127456 21.29 161928 26 32082 123189 20.66 155271 27 34585 123703 21.85 158288 28 32415 119058 21.40 151473 29 33170 124691 21.01 157861 30 31778 115186 21.62 146964 31 30551 118345 20.52 148896 32 29687 111364 21.05 141051 33 31892 112544 22.08 144436 34 31503 114920 21.52 146423 35 37295 120986 23.56 158281 36 32053 110185 22.53 142238 37 32137 114424 21.93 146561 38 29848 110853 21.21 140701 39 30570 107510 22.14 138080 40 31804 109399 22.52 141203 41 29460 104801 21.94 134261 42 29557 106876 21.66 136433 43 29881 106189 21.96 136070 44 28168 102476 21.56 130644 45 32762 107901 23.29 140663 46 27444 97617 21.94 125061 47 27810 98555 22.01 126365 48 27614 96723 22.21 124337 49 26970 99406 21.34 126376 50 25712 93349 21.60 119061 51 26003 91432 22.14 117435 52 26731 94276 22.09 121007 53 26360 90547 22.55 116907 54 25332 90183 21.93 115515 55 25425 88526 22.31 113951 56 24062 87646 21.54 111708 57 24368 85096 22.26 109464 58 24273 85182 22.18 109455 59 23260 81271 22.25 104531 60 23502 82199 22.23 105701 61 21377 80218 21.04 101595 62 21312 78787 21.29 100099 63 22763 77560 22.69 100323 64 21723 77966 21.79 99689 65 21083 73572 22.27 94655 66 22225 75262 22.80 97487 67 20648 75037 21.58 95685 68 21789 76018 22.28 97807 69 20363 72953 21.82 93316 70 19846 72557 21.48 92403 71 20549 68098 23.18 88647 72 19625 68079 22.38 87704 73 19424 69233 21.91 88657 74 18135 66323 21.47 84458 75 18176 66694 21.42 84870 76 18337 64634 22.10 82971 77 18151 64806 21.88 82957 78 18542 65127 22.16 83669 79 17582 63312 21.73 80894 80 17064 61278 21.78 78342 81 17083 61539 21.73 78622 82 16999 61166 21.75 78165 83 17171 59254 22.47 76425 84 18087 62080 22.56 80167 85 16561 59596 21.75 76157 86 16104 58576 21.56 74680 87 15893 57820 21.56 73713 88 16036 57176 21.90 73212 89 16640 56912 22.62 73552 90 16640 55437 23.09 72077 91 15821 54986 22.34 70807 92 14973 54187 21.65 69160 93 15214 54487 21.83 69701 94 15536 54210 22.28 69746 95 15238 52991 22.33 68229 96 14911 52654 22.07 67565 97 15521 54080 22.30 69601 98 14414 49232 22.65 63646 99 12514 0 100.00 12514 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50860 274572 15.63 325432 2 53493 280990 15.99 334483 3 50656 288428 14.94 339084 4 55309 300901 15.53 356210 5 4050 544562 0.74 548612 6 3072 649077 0.47 652149 7 2024 359413 0.56 361437 8 2010 385247 0.52 387257 9 1701 328115 0.52 329816 10 1740 314078 0.55 315818 11 2422 395342 0.61 397764 12 1901 327349 0.58 329250 13 1964 327661 0.60 329625 14 1917 321330 0.59 323247 15 1877 305453 0.61 307330 16 1735 286753 0.60 288488 17 2121 307856 0.68 309977 18 1990 274670 0.72 276660 19 1885 273407 0.68 275292 20 1898 270631 0.70 272529 21 2213 258462 0.85 260675 22 1961 279971 0.70 281932 23 2050 276984 0.73 279034 24 1777 251817 0.70 253594 25 1958 258021 0.75 259979 26 2044 267529 0.76 269573 27 1880 249608 0.75 251488 28 1800 240229 0.74 242029 29 2027 254886 0.79 256913 30 2149 247088 0.86 249237 31 1970 239303 0.82 241273 32 1918 244663 0.78 246581 33 2083 268369 0.77 270452 34 2029 236614 0.85 238643 35 2126 240092 0.88 242218 36 2026 237126 0.85 239152 37 1880 225170 0.83 227050 38 2019 232473 0.86 234492 39 2103 224150 0.93 226253 40 2079 216466 0.95 218545 41 2117 213896 0.98 216013 42 2151 201043 1.06 203194 43 2399 207786 1.14 210185 44 2067 209082 0.98 211149 45 1965 193566 1.00 195531 46 2048 195404 1.04 197452 47 2168 200316 1.07 202484 48 2061 190542 1.07 192603 49 2093 193689 1.07 195782 50 2150 190586 1.12 192736 51 2126 179096 1.17 181222 52 2318 178969 1.28 181287 53 2857 198480 1.42 201337 54 2121 179743 1.17 181864 55 2045 178663 1.13 180708 56 1928 178484 1.07 180412 57 1963 170465 1.14 172428 58 1729 168593 1.02 170322 59 1574 172655 0.90 174229 60 1220 163117 0.74 164337 61 1155 164487 0.70 165642 62 1146 166593 0.68 167739 63 1150 169556 0.67 170706 64 1034 155519 0.66 156553 65 1137 163298 0.69 164435 66 1017 149251 0.68 150268 67 1096 159934 0.68 161030 68 1034 156165 0.66 157199 69 1060 155085 0.68 156145 70 1073 151815 0.70 152888 71 1056 154927 0.68 155983 72 973 144472 0.67 145445 73 996 144349 0.69 145345 74 963 148297 0.65 149260 75 951 142992 0.66 143943 76 830 137060 0.60 137890 77 1008 144064 0.69 145072 78 924 137001 0.67 137925 79 932 137028 0.68 137960 80 927 133200 0.69 134127 81 963 128252 0.75 129215 82 918 127354 0.72 128272 83 917 130050 0.70 130967 84 840 123574 0.68 124414 85 872 131928 0.66 132800 86 897 123845 0.72 124742 87 864 123029 0.70 123893 88 841 117641 0.71 118482 89 915 124736 0.73 125651 90 884 120494 0.73 121378 91 824 121075 0.68 121899 92 858 118839 0.72 119697 93 822 114691 0.71 115513 94 802 113031 0.70 113833 95 844 115816 0.72 116660 96 838 109649 0.76 110487 97 819 109417 0.74 110236 98 707 104272 0.67 104979 99 484 0 100.00 484 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 75686 389572 16.27 465258 2 62454 324152 16.15 386606 3 63247 331816 16.01 395063 4 63688 324212 16.42 387900 5 9071 608421 1.47 617492 6 9204 857537 1.06 866741 7 10240 1131660 0.90 1141900 8 9823 1125045 0.87 1134868 9 10551 1054223 0.99 1064774 10 10016 1081583 0.92 1091599 11 10020 1060448 0.94 1070468 12 9544 988509 0.96 998053 13 9737 1018730 0.95 1028467 14 9895 1029321 0.95 1039216 15 9678 1035038 0.93 1044716 16 9074 985408 0.91 994482 17 9574 988609 0.96 998183 18 9420 983220 0.95 992640 19 8524 926123 0.91 934647 20 9852 961250 1.01 971102 21 9218 909896 1.00 919114 22 9328 897451 1.03 906779 23 9106 874406 1.03 883512 24 8476 841779 1.00 850255 25 9102 842793 1.07 851895 26 8777 839372 1.03 848149 27 9212 871966 1.05 881178 28 8641 845418 1.01 854059 29 8752 834527 1.04 843279 30 9062 809461 1.11 818523 31 8414 795456 1.05 803870 32 8329 779567 1.06 787896 33 8797 766471 1.13 775268 34 8412 759155 1.10 767567 35 9090 779455 1.15 788545 36 8491 770778 1.09 779269 37 8177 759717 1.06 767894 38 8815 779783 1.12 788598 39 8523 735373 1.15 743896 40 8387 750874 1.10 759261 41 8524 724633 1.16 733157 42 8294 725914 1.13 734208 43 8427 699496 1.19 707923 44 7958 699343 1.13 707301 45 8101 694396 1.15 702497 46 7753 701190 1.09 708943 47 7749 690780 1.11 698529 48 7837 676302 1.15 684139 49 7550 673788 1.11 681338 50 7427 667703 1.10 675130 51 7399 650271 1.13 657670 52 7147 620977 1.14 628124 53 7120 624249 1.13 631369 54 6859 606998 1.12 613857 55 6784 616832 1.09 623616 56 6861 606107 1.12 612968 57 6556 609454 1.06 616010 58 6405 597277 1.06 603682 59 6272 579484 1.07 585756 60 5777 590254 0.97 596031 61 5697 567308 0.99 573005 62 5662 562871 1.00 568533 63 5482 560424 0.97 565906 64 5403 546330 0.98 551733 65 5312 549459 0.96 554771 66 5282 533930 0.98 539212 67 5153 529447 0.96 534600 68 5100 543269 0.93 548369 69 5143 531859 0.96 537002 70 5019 519649 0.96 524668 71 5009 514384 0.96 519393 72 5099 506490 1.00 511589 73 4869 501479 0.96 506348 74 4843 500366 0.96 505209 75 4970 500707 0.98 505677 76 4402 485459 0.90 489861 77 4897 480212 1.01 485109 78 4860 481890 1.00 486750 79 4592 486596 0.93 491188 80 4539 470710 0.96 475249 81 4804 467795 1.02 472599 82 4576 465299 0.97 469875 83 4463 461271 0.96 465734 84 4695 458137 1.01 462832 85 4412 448396 0.97 452808 86 4379 448203 0.97 452582 87 4319 441418 0.97 445737 88 4138 431890 0.95 436028 89 4183 428657 0.97 432840 90 4155 429189 0.96 433344 91 3994 425129 0.93 429123 92 3992 421788 0.94 425780 93 3889 414545 0.93 418434 94 3878 406905 0.94 410783 95 3919 402604 0.96 406523 96 3752 396491 0.94 400243 97 3560 394000 0.90 397560 98 3107 371899 0.83 375006 99 2300 0 100.00 2300