Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-136_S36_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-136_S36_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 27792315
Paired-end alignments with a unique best hit 16637986
Pairs without alignments under any condition 6324163
Pairs that did not map uniquely 4830166
Genomic sequence context not extractable (edges of chromosomes) 47215

Cytosine Methylation

Total C's analysed 522137451
Methylated C's in CpG context 15109026
Methylated C's in CHG context 2473284
Methylated C's in CHH context 4984834
Methylated C's in Unknown context 156435
Unmethylated C's in CpG context 60343550
Unmethylated C's in CHG context 110169433
Unmethylated C's in CHH context 329057324
Unmethylated C's in Unknown context 2329691
Percentage methylation (CpG context) 20.0%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8264623 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8326148 original bottom strand