EPI-135_S35_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 13735011 lines in total Total number of methylation call strings processed: 27470022 Final Cytosine Methylation Report ================================= Total number of C's analysed: 307325823 Total methylated C's in CpG context: 11088149 Total methylated C's in CHG context: 1618193 Total methylated C's in CHH context: 3589588 Total C to T conversions in CpG context: 30941628 Total C to T conversions in CHG context: 63320213 Total C to T conversions in CHH context: 196768052 C methylated in CpG context: 26.4% C methylated in CHG context: 2.5% C methylated in CHH context: 1.8%