CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 290774 429616 40.36 720390 2 266501 458802 36.74 725303 3 229734 400482 36.45 630216 4 226931 300824 43.00 527755 5 214489 248009 46.38 462498 6 214361 212283 50.24 426644 7 235918 206068 53.38 441986 8 107165 238911 30.97 346076 9 95914 218956 30.46 314870 10 95611 210322 31.25 305933 11 98286 214853 31.39 313139 12 94851 221909 29.94 316760 13 93508 226410 29.23 319918 14 87761 225470 28.02 313231 15 84711 228824 27.02 313535 16 77506 223395 25.76 300901 17 73176 216440 25.27 289616 18 75289 219508 25.54 294797 19 74210 223342 24.94 297552 20 75729 225755 25.12 301484 21 76106 228106 25.02 304212 22 74298 225637 24.77 299935 23 73761 223545 24.81 297306 24 72527 222620 24.57 295147 25 70420 220440 24.21 290860 26 72150 217231 24.93 289381 27 71154 223196 24.17 294350 28 73771 221150 25.01 294921 29 71210 227792 23.82 299002 30 70756 224058 24.00 294814 31 71760 219888 24.61 291648 32 69850 214694 24.55 284544 33 70510 217105 24.52 287615 34 70837 215097 24.77 285934 35 69484 214802 24.44 284286 36 68827 218015 23.99 286842 37 67719 213479 24.08 281198 38 66904 214172 23.80 281076 39 69319 216364 24.26 285683 40 70107 214272 24.65 284379 41 69806 215224 24.49 285030 42 70179 217877 24.36 288056 43 69403 215981 24.32 285384 44 69118 213426 24.46 282544 45 70142 214024 24.68 284166 46 71371 216014 24.83 287385 47 70746 212596 24.97 283342 48 69810 213654 24.63 283464 49 71339 212771 25.11 284110 50 67953 217058 23.84 285011 51 69232 215176 24.34 284408 52 68580 224194 23.42 292774 53 68167 214156 24.15 282323 54 66750 212393 23.91 279143 55 66052 206168 24.26 272220 56 65991 204844 24.37 270835 57 67117 207367 24.45 274484 58 67549 206852 24.62 274401 59 68679 206453 24.96 275132 60 66958 208588 24.30 275546 61 67737 205195 24.82 272932 62 65863 209143 23.95 275006 63 65425 205196 24.18 270621 64 65073 205185 24.08 270258 65 65569 200140 24.68 265709 66 65897 201588 24.64 267485 67 65436 198830 24.76 264266 68 64562 196293 24.75 260855 69 63174 194103 24.55 257277 70 62170 194562 24.22 256732 71 61218 192816 24.10 254034 72 60936 191351 24.15 252287 73 60982 188107 24.48 249089 74 59455 187193 24.11 246648 75 57886 185213 23.81 243099 76 58385 184302 24.06 242687 77 58565 183219 24.22 241784 78 57790 184364 23.86 242154 79 57443 179837 24.21 237280 80 56011 179265 23.81 235276 81 55347 178573 23.66 233920 82 54500 176009 23.64 230509 83 54701 177446 23.56 232147 84 55168 178382 23.62 233550 85 54549 174729 23.79 229278 86 53000 172014 23.55 225014 87 52145 170605 23.41 222750 88 51890 170026 23.38 221916 89 51087 167170 23.41 218257 90 51559 167361 23.55 218920 91 50957 165131 23.58 216088 92 49243 163302 23.17 212545 93 49436 163612 23.20 213048 94 49349 160347 23.53 209696 95 48827 159811 23.40 208638 96 48874 163294 23.04 212168 97 47412 156272 23.28 203684 98 43752 146598 22.99 190350 99 34684 115670 23.07 150354 100 45827 146491 23.83 192318 101 41884 144025 22.53 185909 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 404079 433421 48.25 837500 2 241223 393452 38.01 634675 3 96112 386271 19.92 482383 4 43807 398758 9.90 442565 5 26554 373653 6.64 400207 6 21905 363788 5.68 385693 7 16237 462045 3.39 478282 8 6761 498116 1.34 504877 9 5306 460811 1.14 466117 10 5160 438053 1.16 443213 11 5358 442662 1.20 448020 12 5197 446219 1.15 451416 13 4747 426770 1.10 431517 14 4230 428087 0.98 432317 15 4211 439277 0.95 443488 16 3676 440239 0.83 443915 17 3901 434007 0.89 437908 18 3937 435061 0.90 438998 19 3488 433805 0.80 437293 20 3612 455892 0.79 459504 21 3643 464709 0.78 468352 22 3532 457847 0.77 461379 23 3808 464244 0.81 468052 24 3500 467135 0.74 470635 25 3516 453053 0.77 456569 26 4211 456331 0.91 460542 27 3581 462135 0.77 465716 28 3513 459766 0.76 463279 29 3947 465482 0.84 469429 30 3565 468789 0.75 472354 31 3583 459953 0.77 463536 32 3517 462170 0.76 465687 33 3540 462004 0.76 465544 34 3533 453383 0.77 456916 35 3768 460352 0.81 464120 36 3562 460360 0.77 463922 37 3568 448596 0.79 452164 38 3841 454140 0.84 457981 39 3517 451358 0.77 454875 40 3449 450834 0.76 454283 41 3615 450434 0.80 454049 42 3536 455101 0.77 458637 43 3439 445938 0.77 449377 44 3422 454171 0.75 457593 45 3602 453928 0.79 457530 46 3525 448091 0.78 451616 47 3734 451264 0.82 454998 48 3529 457977 0.76 461506 49 3514 447671 0.78 451185 50 3764 449248 0.83 453012 51 3730 453362 0.82 457092 52 3685 452589 0.81 456274 53 3656 449541 0.81 453197 54 3801 453817 0.83 457618 55 3656 446296 0.81 449952 56 3909 451527 0.86 455436 57 3889 450697 0.86 454586 58 4683 445962 1.04 450645 59 4373 449550 0.96 453923 60 4345 452608 0.95 456953 61 4478 447616 0.99 452094 62 4562 449513 1.00 454075 63 4467 443963 1.00 448430 64 4509 442653 1.01 447162 65 4970 439334 1.12 444304 66 4519 433007 1.03 437526 67 4660 422732 1.09 427392 68 4668 426855 1.08 431523 69 4407 424221 1.03 428628 70 4516 416953 1.07 421469 71 4384 415774 1.04 420158 72 4562 415148 1.09 419710 73 4479 409535 1.08 414014 74 4593 403762 1.12 408355 75 4357 406877 1.06 411234 76 4116 396039 1.03 400155 77 4405 398061 1.09 402466 78 4243 391803 1.07 396046 79 4223 386012 1.08 390235 80 4256 384528 1.09 388784 81 4283 381152 1.11 385435 82 4011 374236 1.06 378247 83 4169 380841 1.08 385010 84 4159 379539 1.08 383698 85 4256 371660 1.13 375916 86 4400 373287 1.16 377687 87 4225 373196 1.12 377421 88 4155 365722 1.12 369877 89 4316 363850 1.17 368166 90 4296 363415 1.17 367711 91 4340 355315 1.21 359655 92 4411 356611 1.22 361022 93 4630 353894 1.29 358524 94 4569 348758 1.29 353327 95 4519 346882 1.29 351401 96 4776 344099 1.37 348875 97 4416 312875 1.39 317291 98 4008 287541 1.37 291549 99 2578 185536 1.37 188114 100 2945 187266 1.55 190211 101 5773 307846 1.84 313619 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 351265 487854 41.86 839119 2 165399 517423 24.22 682822 3 77119 660418 10.46 737537 4 64563 710730 8.33 775293 5 57419 859347 6.26 916766 6 45699 947301 4.60 993000 7 40365 1219156 3.20 1259521 8 24733 1312198 1.85 1336931 9 19107 1200309 1.57 1219416 10 18784 1176994 1.57 1195778 11 22012 1180220 1.83 1202232 12 19071 1211945 1.55 1231016 13 21602 1240911 1.71 1262513 14 21933 1275759 1.69 1297692 15 19618 1313293 1.47 1332911 16 19137 1344536 1.40 1363673 17 20824 1350734 1.52 1371558 18 18597 1406188 1.31 1424785 19 18859 1438219 1.29 1457078 20 21081 1483247 1.40 1504328 21 18874 1488165 1.25 1507039 22 20397 1488817 1.35 1509214 23 21738 1489676 1.44 1511414 24 18727 1489718 1.24 1508445 25 20355 1500195 1.34 1520550 26 21562 1513328 1.40 1534890 27 19512 1517970 1.27 1537482 28 19313 1521253 1.25 1540566 29 21303 1511406 1.39 1532709 30 18981 1496280 1.25 1515261 31 19278 1476318 1.29 1495596 32 20440 1484618 1.36 1505058 33 18714 1483203 1.25 1501917 34 20571 1493039 1.36 1513610 35 21136 1486452 1.40 1507588 36 18926 1493622 1.25 1512548 37 18983 1487984 1.26 1506967 38 21576 1494935 1.42 1516511 39 18937 1483192 1.26 1502129 40 19613 1489582 1.30 1509195 41 21900 1493348 1.45 1515248 42 19689 1506085 1.29 1525774 43 20481 1489712 1.36 1510193 44 21133 1495935 1.39 1517068 45 19671 1483547 1.31 1503218 46 19769 1487608 1.31 1507377 47 20515 1480858 1.37 1501373 48 18614 1485674 1.24 1504288 49 18661 1462729 1.26 1481390 50 20443 1459055 1.38 1479498 51 18470 1446360 1.26 1464830 52 19212 1445038 1.31 1464250 53 20140 1435115 1.38 1455255 54 18493 1438104 1.27 1456597 55 19018 1442223 1.30 1461241 56 20358 1436498 1.40 1456856 57 18281 1450705 1.24 1468986 58 20645 1436912 1.42 1457557 59 20808 1450876 1.41 1471684 60 18268 1425890 1.26 1444158 61 19676 1418693 1.37 1438369 62 20362 1406868 1.43 1427230 63 18632 1389386 1.32 1408018 64 19577 1382412 1.40 1401989 65 19910 1379991 1.42 1399901 66 18381 1369251 1.32 1387632 67 18550 1358364 1.35 1376914 68 19361 1349126 1.41 1368487 69 18158 1342578 1.33 1360736 70 17996 1337875 1.33 1355871 71 19494 1327925 1.45 1347419 72 17963 1322275 1.34 1340238 73 19115 1306164 1.44 1325279 74 19249 1302869 1.46 1322118 75 17428 1290481 1.33 1307909 76 17943 1282391 1.38 1300334 77 19054 1271579 1.48 1290633 78 16758 1262341 1.31 1279099 79 17174 1254775 1.35 1271949 80 18741 1248283 1.48 1267024 81 16987 1229471 1.36 1246458 82 17774 1218735 1.44 1236509 83 18247 1217449 1.48 1235696 84 16831 1203591 1.38 1220422 85 16672 1189211 1.38 1205883 86 17387 1180108 1.45 1197495 87 15726 1175889 1.32 1191615 88 15780 1167757 1.33 1183537 89 17325 1156764 1.48 1174089 90 15742 1150162 1.35 1165904 91 16147 1134601 1.40 1150748 92 16943 1132626 1.47 1149569 93 15699 1125437 1.38 1141136 94 15933 1111679 1.41 1127612 95 17128 1100262 1.53 1117390 96 15221 1077960 1.39 1093181 97 15501 1052084 1.45 1067585 98 15569 976736 1.57 992305 99 9907 676044 1.44 685951 100 10702 603693 1.74 614395 101 15284 982884 1.53 998168 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 156628 209245 42.81 365873 2 138695 191631 41.99 330326 3 146358 211105 40.94 357463 4 136949 235413 36.78 372362 5 58974 293740 16.72 352714 6 34536 160111 17.74 194647 7 31689 173785 15.42 205474 8 34056 163003 17.28 197059 9 30269 143722 17.40 173991 10 33881 159280 17.54 193161 11 35459 153289 18.79 188748 12 35157 149369 19.05 184526 13 35313 144554 19.63 179867 14 36029 146248 19.77 182277 15 35779 134465 21.02 170244 16 34791 131581 20.91 166372 17 41565 143125 22.51 184690 18 40432 135293 23.01 175725 19 37547 130598 22.33 168145 20 35961 128343 21.89 164304 21 38088 126672 23.12 164760 22 37261 130721 22.18 167982 23 35432 124957 22.09 160389 24 33657 120129 21.89 153786 25 37419 125848 22.92 163267 26 34197 120809 22.06 155006 27 37488 121007 23.65 158495 28 35013 117283 22.99 152296 29 36004 122040 22.78 158044 30 34152 113343 23.15 147495 31 32654 116117 21.95 148771 32 32398 109106 22.90 141504 33 33691 110033 23.44 143724 34 34037 112015 23.30 146052 35 41179 118500 25.79 159679 36 35140 108825 24.41 143965 37 34903 112010 23.76 146913 38 31891 107566 22.87 139457 39 33366 105641 24.00 139007 40 34665 106020 24.64 140685 41 31776 102560 23.65 134336 42 32031 104883 23.39 136914 43 32456 103854 23.81 136310 44 30143 100551 23.06 130694 45 35375 105229 25.16 140604 46 29666 94942 23.81 124608 47 30138 96023 23.89 126161 48 29500 93553 23.97 123053 49 28918 96147 23.12 125065 50 27661 90562 23.40 118223 51 28059 88424 24.09 116483 52 28809 91965 23.85 120774 53 28502 87840 24.50 116342 54 27415 87245 23.91 114660 55 27187 86516 23.91 113703 56 25764 84196 23.43 109960 57 26095 82181 24.10 108276 58 25751 82846 23.71 108597 59 25003 78115 24.25 103118 60 25677 78730 24.59 104407 61 23030 77870 22.82 100900 62 22911 76713 23.00 99624 63 24064 75063 24.28 99127 64 23127 75423 23.47 98550 65 22788 70888 24.33 93676 66 23837 72653 24.70 96490 67 21903 72893 23.11 94796 68 23635 73774 24.26 97409 69 21688 70835 23.44 92523 70 21205 70961 23.01 92166 71 22281 66529 25.09 88810 72 21110 65442 24.39 86552 73 21155 67207 23.94 88362 74 19324 64914 22.94 84238 75 19373 64254 23.17 83627 76 19647 63582 23.61 83229 77 19368 62655 23.61 82023 78 19415 62828 23.61 82243 79 18679 61373 23.33 80052 80 18143 60118 23.18 78261 81 18321 59767 23.46 78088 82 18219 59635 23.40 77854 83 18247 56853 24.30 75100 84 19471 60360 24.39 79831 85 17344 58030 23.01 75374 86 16988 56498 23.12 73486 87 16903 55539 23.33 72442 88 16901 55659 23.29 72560 89 17772 54518 24.58 72290 90 17651 53987 24.64 71638 91 16968 53383 24.12 70351 92 16075 53145 23.22 69220 93 16046 52596 23.38 68642 94 16130 52453 23.52 68583 95 16403 51501 24.16 67904 96 15844 50542 23.87 66386 97 16667 51843 24.33 68510 98 15167 47012 24.39 62179 99 13115 0 100.00 13115 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 53473 282497 15.92 335970 2 54367 287076 15.92 341443 3 51537 294121 14.91 345658 4 55390 303198 15.45 358588 5 4221 550820 0.76 555041 6 3294 668504 0.49 671798 7 2145 368045 0.58 370190 8 2213 395937 0.56 398150 9 1862 334474 0.55 336336 10 1817 322082 0.56 323899 11 2634 409446 0.64 412080 12 2071 338194 0.61 340265 13 2095 336156 0.62 338251 14 2005 329125 0.61 331130 15 1953 312913 0.62 314866 16 1872 293203 0.63 295075 17 2073 316118 0.65 318191 18 2259 279451 0.80 281710 19 2074 280466 0.73 282540 20 2232 274598 0.81 276830 21 2573 262700 0.97 265273 22 2427 285087 0.84 287514 23 2224 284919 0.77 287143 24 2121 256797 0.82 258918 25 2144 264675 0.80 266819 26 2443 272876 0.89 275319 27 2309 254800 0.90 257109 28 2084 242625 0.85 244709 29 2385 258919 0.91 261304 30 2576 252548 1.01 255124 31 2318 243069 0.94 245387 32 2262 248568 0.90 250830 33 2471 275180 0.89 277651 34 2385 240608 0.98 242993 35 2409 245828 0.97 248237 36 2339 244132 0.95 246471 37 2161 227684 0.94 229845 38 2379 235876 1.00 238255 39 2186 225562 0.96 227748 40 2293 220219 1.03 222512 41 2439 217857 1.11 220296 42 2541 203498 1.23 206039 43 2681 210099 1.26 212780 44 2248 212035 1.05 214283 45 2273 195142 1.15 197415 46 2355 196828 1.18 199183 47 2481 203516 1.20 205997 48 2278 194010 1.16 196288 49 2267 196414 1.14 198681 50 2427 193177 1.24 195604 51 2342 181087 1.28 183429 52 2589 181470 1.41 184059 53 3161 201224 1.55 204385 54 2302 183429 1.24 185731 55 2144 181275 1.17 183419 56 2170 181205 1.18 183375 57 2169 171413 1.25 173582 58 1920 170818 1.11 172738 59 1628 175864 0.92 177492 60 1295 165101 0.78 166396 61 1216 166862 0.72 168078 62 1249 169159 0.73 170408 63 1256 170403 0.73 171659 64 1146 157449 0.72 158595 65 1153 164279 0.70 165432 66 1145 151891 0.75 153036 67 1138 162711 0.69 163849 68 1124 158566 0.70 159690 69 1084 156291 0.69 157375 70 1135 155102 0.73 156237 71 1097 156810 0.69 157907 72 1048 146264 0.71 147312 73 989 145790 0.67 146779 74 979 150745 0.65 151724 75 1070 144157 0.74 145227 76 933 138255 0.67 139188 77 1024 146021 0.70 147045 78 974 138125 0.70 139099 79 1043 138311 0.75 139354 80 910 134952 0.67 135862 81 941 129857 0.72 130798 82 943 128046 0.73 128989 83 938 130287 0.71 131225 84 876 124237 0.70 125113 85 942 133571 0.70 134513 86 896 124978 0.71 125874 87 910 123268 0.73 124178 88 863 118329 0.72 119192 89 904 125692 0.71 126596 90 960 121277 0.79 122237 91 988 122539 0.80 123527 92 860 119789 0.71 120649 93 853 115491 0.73 116344 94 802 113563 0.70 114365 95 845 116184 0.72 117029 96 888 110679 0.80 111567 97 835 109765 0.75 110600 98 696 105253 0.66 105949 99 543 0 100.00 543 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 77460 392532 16.48 469992 2 64331 324179 16.56 388510 3 64931 334885 16.24 399816 4 65514 327175 16.68 392689 5 10215 621126 1.62 631341 6 10917 872977 1.24 883894 7 11871 1156588 1.02 1168459 8 11176 1145503 0.97 1156679 9 11999 1073666 1.11 1085665 10 11599 1103471 1.04 1115070 11 11374 1084605 1.04 1095979 12 11029 1011562 1.08 1022591 13 10875 1045327 1.03 1056202 14 11279 1052327 1.06 1063606 15 10860 1062778 1.01 1073638 16 10175 1013475 0.99 1023650 17 11183 1014123 1.09 1025306 18 10837 1006324 1.07 1017161 19 9855 944622 1.03 954477 20 11114 984058 1.12 995172 21 10445 931154 1.11 941599 22 10799 912910 1.17 923709 23 10233 893837 1.13 904070 24 9582 860226 1.10 869808 25 10794 859210 1.24 870004 26 9983 853907 1.16 863890 27 10554 892665 1.17 903219 28 10204 862336 1.17 872540 29 10001 849269 1.16 859270 30 10462 821555 1.26 832017 31 10010 809568 1.22 819578 32 9427 794570 1.17 803997 33 10145 781108 1.28 791253 34 9659 774122 1.23 783781 35 10270 791761 1.28 802031 36 9574 787210 1.20 796784 37 9434 775537 1.20 784971 38 10056 799951 1.24 810007 39 9877 746403 1.31 756280 40 9465 766921 1.22 776386 41 9576 735616 1.29 745192 42 9707 739326 1.30 749033 43 9620 710538 1.34 720158 44 8990 711881 1.25 720871 45 9518 706041 1.33 715559 46 9205 712734 1.28 721939 47 8582 702220 1.21 710802 48 8857 688115 1.27 696972 49 8732 688542 1.25 697274 50 8564 681896 1.24 690460 51 8712 665473 1.29 674185 52 8077 632279 1.26 640356 53 8312 634222 1.29 642534 54 7826 619591 1.25 627417 55 7735 628842 1.22 636577 56 7592 617059 1.22 624651 57 7492 624417 1.19 631909 58 7133 608427 1.16 615560 59 7101 588690 1.19 595791 60 6579 601058 1.08 607637 61 6712 580468 1.14 587180 62 6467 574888 1.11 581355 63 6284 572614 1.09 578898 64 6436 555372 1.15 561808 65 6009 557824 1.07 563833 66 6115 541556 1.12 547671 67 5962 540584 1.09 546546 68 5958 556637 1.06 562595 69 6130 539129 1.12 545259 70 5840 527812 1.09 533652 71 5590 521961 1.06 527551 72 6073 516530 1.16 522603 73 5766 511389 1.11 517155 74 5392 510818 1.04 516210 75 5490 509449 1.07 514939 76 5298 494452 1.06 499750 77 5693 489528 1.15 495221 78 5426 490039 1.10 495465 79 5423 495831 1.08 501254 80 5525 478094 1.14 483619 81 5450 476153 1.13 481603 82 5443 471824 1.14 477267 83 5047 467565 1.07 472612 84 5440 464756 1.16 470196 85 5144 455832 1.12 460976 86 4980 453845 1.09 458825 87 4830 448794 1.06 453624 88 4829 438014 1.09 442843 89 4814 434859 1.09 439673 90 4827 435417 1.10 440244 91 4647 430668 1.07 435315 92 4539 427566 1.05 432105 93 4521 421056 1.06 425577 94 4379 411631 1.05 416010 95 4549 408900 1.10 413449 96 4226 401289 1.04 405515 97 4034 399880 1.00 403914 98 3609 376961 0.95 380570 99 2494 0 100.00 2494