Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-135_S35_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-135_S35_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 28731808
Paired-end alignments with a unique best hit 17397580
Pairs without alignments under any condition 6195835
Pairs that did not map uniquely 5138393
Genomic sequence context not extractable (edges of chromosomes) 65502

Cytosine Methylation

Total C's analysed 539984768
Methylated C's in CpG context 16925914
Methylated C's in CHG context 2727523
Methylated C's in CHH context 5571810
Methylated C's in Unknown context 180511
Unmethylated C's in CpG context 63148007
Unmethylated C's in CHG context 113347874
Unmethylated C's in CHH context 338263640
Unmethylated C's in Unknown context 2365499
Percentage methylation (CpG context) 21.1%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8573754 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8758324 original bottom strand