EPI-128_S34_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 12451832 lines in total Total number of methylation call strings processed: 24903664 Final Cytosine Methylation Report ================================= Total number of C's analysed: 294499987 Total methylated C's in CpG context: 10264289 Total methylated C's in CHG context: 1467513 Total methylated C's in CHH context: 3101571 Total C to T conversions in CpG context: 30413930 Total C to T conversions in CHG context: 60119353 Total C to T conversions in CHH context: 189133331 C methylated in CpG context: 25.2% C methylated in CHG context: 2.4% C methylated in CHH context: 1.6%