CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 255237 418679 37.87 673916 2 235096 445776 34.53 680872 3 205080 387257 34.62 592337 4 201708 285307 41.42 487015 5 190557 237389 44.53 427946 6 191096 204603 48.29 395699 7 208205 196883 51.40 405088 8 95432 229250 29.39 324682 9 86154 209908 29.10 296062 10 85975 199992 30.06 285967 11 88607 203766 30.31 292373 12 85646 210453 28.92 296099 13 83242 214851 27.92 298093 14 78340 213390 26.85 291730 15 74790 214290 25.87 289080 16 68663 210048 24.64 278711 17 65247 203511 24.28 268758 18 66601 205680 24.46 272281 19 65916 209647 23.92 275563 20 66413 212176 23.84 278589 21 67878 214563 24.03 282441 22 65644 211801 23.66 277445 23 65492 209389 23.83 274881 24 64043 208985 23.46 273028 25 62812 207209 23.26 270021 26 63084 203653 23.65 266737 27 63329 210068 23.16 273397 28 65188 207709 23.89 272897 29 63697 214671 22.88 278368 30 62454 209996 22.92 272450 31 63437 206847 23.47 270284 32 62249 201052 23.64 263301 33 62574 204002 23.47 266576 34 63573 202919 23.86 266492 35 61921 201996 23.46 263917 36 61590 204981 23.10 266571 37 60227 201041 23.05 261268 38 60342 201964 23.00 262306 39 61973 203662 23.33 265635 40 62578 201765 23.67 264343 41 62360 202632 23.53 264992 42 62893 205776 23.41 268669 43 62704 205095 23.41 267799 44 61374 203037 23.21 264411 45 62657 202683 23.61 265340 46 63541 203979 23.75 267520 47 63278 200450 23.99 263728 48 63033 202776 23.71 265809 49 63932 200940 24.14 264872 50 61356 204811 23.05 266167 51 62324 204039 23.40 266363 52 61908 210838 22.70 272746 53 60677 201327 23.16 262004 54 60097 201052 23.01 261149 55 59031 195111 23.23 254142 56 58894 193535 23.33 252429 57 60032 196635 23.39 256667 58 60692 195958 23.65 256650 59 61632 195894 23.93 257526 60 59795 198325 23.17 258120 61 60898 194150 23.88 255048 62 59303 198283 23.02 257586 63 58803 195720 23.10 254523 64 58593 195196 23.09 253789 65 59196 191818 23.58 251014 66 59648 192496 23.66 252144 67 59018 189973 23.70 248991 68 57602 188936 23.36 246538 69 56847 187211 23.29 244058 70 56443 187405 23.15 243848 71 55950 185444 23.18 241394 72 55450 185267 23.04 240717 73 55768 183292 23.33 239060 74 54458 181095 23.12 235553 75 53449 181212 22.78 234661 76 53404 179339 22.95 232743 77 54208 177994 23.35 232202 78 53766 179228 23.08 232994 79 52697 176345 23.01 229042 80 51658 176206 22.67 227864 81 51656 174664 22.82 226320 82 50678 173613 22.59 224291 83 51079 174227 22.67 225306 84 51049 176191 22.46 227240 85 50770 172994 22.69 223764 86 49694 170736 22.54 220430 87 48698 169635 22.30 218333 88 49162 169237 22.51 218399 89 48326 165766 22.57 214092 90 48156 166612 22.42 214768 91 47730 163715 22.57 211445 92 46467 163352 22.15 209819 93 46445 163516 22.12 209961 94 46894 161412 22.51 208306 95 46098 160513 22.31 206611 96 46330 162509 22.18 208839 97 44998 156953 22.28 201951 98 42020 147596 22.16 189616 99 32901 116639 22.00 149540 100 42848 148139 22.44 190987 101 39016 145733 21.12 184749 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 374626 396517 48.58 771143 2 224774 355185 38.76 579959 3 84806 347899 19.60 432705 4 37836 363380 9.43 401216 5 22225 340776 6.12 363001 6 18094 331746 5.17 349840 7 14187 424588 3.23 438775 8 5855 461348 1.25 467203 9 4859 422334 1.14 427193 10 4786 400682 1.18 405468 11 4770 404783 1.16 409553 12 4714 405724 1.15 410438 13 4192 387924 1.07 392116 14 3709 388805 0.94 392514 15 3686 398771 0.92 402457 16 3236 397930 0.81 401166 17 3420 394961 0.86 398381 18 3383 394356 0.85 397739 19 3114 393644 0.78 396758 20 3108 414273 0.74 417381 21 3078 420694 0.73 423772 22 3166 415830 0.76 418996 23 3256 418998 0.77 422254 24 3072 422422 0.72 425494 25 3111 408218 0.76 411329 26 3439 413879 0.82 417318 27 3095 418017 0.73 421112 28 3105 417648 0.74 420753 29 3389 421849 0.80 425238 30 3255 426088 0.76 429343 31 3082 416540 0.73 419622 32 3041 418930 0.72 421971 33 2965 419780 0.70 422745 34 3124 410764 0.75 413888 35 3279 417710 0.78 420989 36 3119 418013 0.74 421132 37 3042 408377 0.74 411419 38 3285 413216 0.79 416501 39 3149 412202 0.76 415351 40 3065 410142 0.74 413207 41 3126 410029 0.76 413155 42 3048 411940 0.73 414988 43 2969 407668 0.72 410637 44 2914 414757 0.70 417671 45 3095 412638 0.74 415733 46 3002 408573 0.73 411575 47 3133 410017 0.76 413150 48 3047 416360 0.73 419407 49 3089 408310 0.75 411399 50 3151 410643 0.76 413794 51 3126 413371 0.75 416497 52 3192 412911 0.77 416103 53 3235 410563 0.78 413798 54 3276 415258 0.78 418534 55 3293 409237 0.80 412530 56 3322 412346 0.80 415668 57 3458 412565 0.83 416023 58 3934 406973 0.96 410907 59 3561 411701 0.86 415262 60 3642 415314 0.87 418956 61 3762 410895 0.91 414657 62 3774 412359 0.91 416133 63 3729 407934 0.91 411663 64 3709 408078 0.90 411787 65 4044 404460 0.99 408504 66 3886 398481 0.97 402367 67 3901 390476 0.99 394377 68 3969 394127 1.00 398096 69 3733 394965 0.94 398698 70 3805 389265 0.97 393070 71 3884 389039 0.99 392923 72 3781 387338 0.97 391119 73 3722 382528 0.96 386250 74 3747 381247 0.97 384994 75 3693 381387 0.96 385080 76 3658 373649 0.97 377307 77 3805 376150 1.00 379955 78 3575 371563 0.95 375138 79 3537 364575 0.96 368112 80 3605 364394 0.98 367999 81 3666 359789 1.01 363455 82 3486 355534 0.97 359020 83 3745 362431 1.02 366176 84 3732 362384 1.02 366116 85 3763 354832 1.05 358595 86 3826 357168 1.06 360994 87 3669 357987 1.01 361656 88 3821 350363 1.08 354184 89 3765 349200 1.07 352965 90 3838 348180 1.09 352018 91 3813 343880 1.10 347693 92 3902 344381 1.12 348283 93 4128 342935 1.19 347063 94 4008 337369 1.17 341377 95 3990 335980 1.17 339970 96 4074 334589 1.20 338663 97 3997 305311 1.29 309308 98 3613 281372 1.27 284985 99 2418 181950 1.31 184368 100 2723 184921 1.45 187644 101 5051 301072 1.65 306123 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 313907 422823 42.61 736730 2 145360 448047 24.50 593407 3 66206 591544 10.07 657750 4 55123 643147 7.89 698270 5 48065 777363 5.82 825428 6 38694 863281 4.29 901975 7 34459 1114098 3.00 1148557 8 20229 1197207 1.66 1217436 9 16123 1094473 1.45 1110596 10 15772 1068506 1.45 1084278 11 17916 1073310 1.64 1091226 12 16033 1103153 1.43 1119186 13 17599 1129994 1.53 1147593 14 17480 1164150 1.48 1181630 15 16297 1196588 1.34 1212885 16 15572 1226768 1.25 1242340 17 17213 1236771 1.37 1253984 18 15293 1286092 1.18 1301385 19 15744 1315473 1.18 1331217 20 17317 1357342 1.26 1374659 21 15541 1360129 1.13 1375670 22 16789 1363457 1.22 1380246 23 17633 1361906 1.28 1379539 24 15524 1363172 1.13 1378696 25 16436 1373254 1.18 1389690 26 17512 1383661 1.25 1401173 27 15955 1388931 1.14 1404886 28 15798 1390769 1.12 1406567 29 17512 1384248 1.25 1401760 30 15616 1369049 1.13 1384665 31 15794 1349056 1.16 1364850 32 16829 1362693 1.22 1379522 33 15378 1356020 1.12 1371398 34 16956 1368265 1.22 1385221 35 17245 1358873 1.25 1376118 36 15705 1368578 1.13 1384283 37 15638 1361790 1.14 1377428 38 17423 1368950 1.26 1386373 39 15559 1362066 1.13 1377625 40 16141 1363379 1.17 1379520 41 17664 1368773 1.27 1386437 42 16274 1379356 1.17 1395630 43 17122 1363731 1.24 1380853 44 17261 1372140 1.24 1389401 45 16189 1360773 1.18 1376962 46 16054 1365076 1.16 1381130 47 16832 1360161 1.22 1376993 48 15337 1365095 1.11 1380432 49 15664 1347038 1.15 1362702 50 17068 1344488 1.25 1361556 51 15203 1334383 1.13 1349586 52 16164 1331108 1.20 1347272 53 16801 1324289 1.25 1341090 54 15176 1329421 1.13 1344597 55 15853 1330924 1.18 1346777 56 16898 1327714 1.26 1344612 57 15104 1346166 1.11 1361270 58 17365 1332431 1.29 1349796 59 17376 1346623 1.27 1363999 60 15344 1326669 1.14 1342013 61 16504 1320986 1.23 1337490 62 16725 1310969 1.26 1327694 63 15335 1299219 1.17 1314554 64 16215 1294387 1.24 1310602 65 16440 1294726 1.25 1311166 66 15534 1284940 1.19 1300474 67 15539 1279751 1.20 1295290 68 16469 1275297 1.27 1291766 69 15198 1271814 1.18 1287012 70 15494 1266835 1.21 1282329 71 16386 1259935 1.28 1276321 72 14946 1257320 1.17 1272266 73 16055 1243826 1.27 1259881 74 16353 1242868 1.30 1259221 75 14996 1234359 1.20 1249355 76 15311 1229130 1.23 1244441 77 16329 1219538 1.32 1235867 78 14142 1212296 1.15 1226438 79 14626 1207211 1.20 1221837 80 15911 1201272 1.31 1217183 81 14550 1186966 1.21 1201516 82 15151 1178763 1.27 1193914 83 15871 1183307 1.32 1199178 84 14694 1168989 1.24 1183683 85 14270 1157354 1.22 1171624 86 15119 1150441 1.30 1165560 87 13865 1145333 1.20 1159198 88 14110 1140721 1.22 1154831 89 15185 1131521 1.32 1146706 90 13846 1124869 1.22 1138715 91 14222 1115171 1.26 1129393 92 14873 1114944 1.32 1129817 93 13809 1105148 1.23 1118957 94 14283 1097624 1.28 1111907 95 15019 1086734 1.36 1101753 96 13723 1065931 1.27 1079654 97 13906 1041279 1.32 1055185 98 13870 967383 1.41 981253 99 8881 672616 1.30 681497 100 9295 601571 1.52 610866 101 13475 975586 1.36 989061 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 147226 206695 41.60 353921 2 131634 189873 40.94 321507 3 140379 210683 39.99 351062 4 133762 237608 36.02 371370 5 57046 295291 16.19 352337 6 33558 160081 17.33 193639 7 30410 172980 14.95 203390 8 32516 162832 16.65 195348 9 28984 144232 16.73 173216 10 32399 159091 16.92 191490 11 34615 155153 18.24 189768 12 33758 149960 18.37 183718 13 34650 146278 19.15 180928 14 35856 147982 19.50 183838 15 34856 135958 20.41 170814 16 33834 133663 20.20 167497 17 40246 145383 21.68 185629 18 39760 137249 22.46 177009 19 37022 133198 21.75 170220 20 35377 129912 21.40 165289 21 37454 128783 22.53 166237 22 36253 131303 21.64 167556 23 34442 127296 21.29 161738 24 33468 122282 21.49 155750 25 36226 129114 21.91 165340 26 33676 123630 21.41 157306 27 36556 124051 22.76 160607 28 34562 119793 22.39 154355 29 35264 124886 22.02 160150 30 33177 115999 22.24 149176 31 32055 118413 21.30 150468 32 31683 112693 21.94 144376 33 33806 112826 23.05 146632 34 33239 115116 22.41 148355 35 39874 122237 24.60 162111 36 34449 112195 23.49 146644 37 34301 116244 22.78 150545 38 31599 111337 22.11 142936 39 32783 109564 23.03 142347 40 34334 110157 23.76 144491 41 31381 106898 22.69 138279 42 31498 108298 22.53 139796 43 32198 107864 22.99 140062 44 29712 104073 22.21 133785 45 35380 109573 24.41 144953 46 29582 99402 22.93 128984 47 30027 99596 23.16 129623 48 29196 98232 22.91 127428 49 28921 100135 22.41 129056 50 27599 95046 22.50 122645 51 27789 94164 22.79 121953 52 28361 96138 22.78 124499 53 28167 92570 23.33 120737 54 27591 92763 22.92 120354 55 27427 90976 23.16 118403 56 26122 89489 22.59 115611 57 26732 87294 23.44 114026 58 25899 88423 22.65 114322 59 25261 84290 23.06 109551 60 26209 84810 23.61 111019 61 23477 82509 22.15 105986 62 23703 82084 22.41 105787 63 24891 80392 23.64 105283 64 23739 80680 22.73 104419 65 22942 76224 23.13 99166 66 24182 78136 23.63 102318 67 22596 78714 22.30 101310 68 24199 79110 23.42 103309 69 22179 76647 22.44 98826 70 21664 75974 22.19 97638 71 22313 71296 23.84 93609 72 21915 71358 23.50 93273 73 21589 72643 22.91 94232 74 19713 69731 22.04 89444 75 20243 68970 22.69 89213 76 20307 68118 22.97 88425 77 20251 67731 23.02 87982 78 20191 68160 22.85 88351 79 19253 66217 22.53 85470 80 18924 64839 22.59 83763 81 18641 64215 22.50 82856 82 18770 64093 22.65 82863 83 18663 61462 23.29 80125 84 19775 65059 23.31 84834 85 18225 62739 22.51 80964 86 17617 61760 22.19 79377 87 17659 60287 22.66 77946 88 17539 59616 22.73 77155 89 18475 59685 23.64 78160 90 18160 58887 23.57 77047 91 17539 58284 23.13 75823 92 16650 56875 22.65 73525 93 16799 57304 22.67 74103 94 17000 56790 23.04 73790 95 16741 55798 23.08 72539 96 16412 55214 22.91 71626 97 17245 56409 23.41 73654 98 15729 51481 23.40 67210 99 13764 0 100.00 13764 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50514 272403 15.64 322917 2 53227 279006 16.02 332233 3 49706 283859 14.90 333565 4 54197 295172 15.51 349369 5 3932 535567 0.73 539499 6 2998 646578 0.46 649576 7 2001 355443 0.56 357444 8 1928 381859 0.50 383787 9 1758 325261 0.54 327019 10 1769 313422 0.56 315191 11 2442 394100 0.62 396542 12 1935 329056 0.58 330991 13 1895 326998 0.58 328893 14 1901 319784 0.59 321685 15 1982 305536 0.64 307518 16 1734 286029 0.60 287763 17 2115 307593 0.68 309708 18 2112 273868 0.77 275980 19 1853 273538 0.67 275391 20 1992 269377 0.73 271369 21 2221 259048 0.85 261269 22 2067 279578 0.73 281645 23 1948 278118 0.70 280066 24 1772 254299 0.69 256071 25 1893 259435 0.72 261328 26 2066 268132 0.76 270198 27 1921 251515 0.76 253436 28 1845 240866 0.76 242711 29 1986 255229 0.77 257215 30 2099 249809 0.83 251908 31 1882 241051 0.77 242933 32 1877 245855 0.76 247732 33 2080 271681 0.76 273761 34 1898 238624 0.79 240522 35 2088 244077 0.85 246165 36 1936 242945 0.79 244881 37 1774 227601 0.77 229375 38 1943 235329 0.82 237272 39 1860 226450 0.81 228310 40 1901 221299 0.85 223200 41 2061 218267 0.94 220328 42 1935 206199 0.93 208134 43 2099 211720 0.98 213819 44 1803 212910 0.84 214713 45 1772 198492 0.88 200264 46 1764 200773 0.87 202537 47 2018 205265 0.97 207283 48 1748 196363 0.88 198111 49 1858 199964 0.92 201822 50 1971 196236 0.99 198207 51 1806 184848 0.97 186654 52 2064 185623 1.10 187687 53 2502 204438 1.21 206940 54 1872 186974 0.99 188846 55 1759 186265 0.94 188024 56 1724 186047 0.92 187771 57 1813 177122 1.01 178935 58 1585 174763 0.90 176348 59 1448 180020 0.80 181468 60 1310 171431 0.76 172741 61 1212 173478 0.69 174690 62 1181 174690 0.67 175871 63 1226 176610 0.69 177836 64 1048 163787 0.64 164835 65 1173 169863 0.69 171036 66 1130 158210 0.71 159340 67 1166 167481 0.69 168647 68 1084 165174 0.65 166258 69 1126 162051 0.69 163177 70 992 160253 0.62 161245 71 1132 162365 0.69 163497 72 1045 152686 0.68 153731 73 1005 151589 0.66 152594 74 1019 156188 0.65 157207 75 995 150423 0.66 151418 76 923 144420 0.64 145343 77 1046 151450 0.69 152496 78 986 144652 0.68 145638 79 1000 144302 0.69 145302 80 962 140727 0.68 141689 81 894 135191 0.66 136085 82 873 134537 0.64 135410 83 906 135753 0.66 136659 84 863 130837 0.66 131700 85 910 139471 0.65 140381 86 841 131211 0.64 132052 87 908 128816 0.70 129724 88 843 124810 0.67 125653 89 975 131348 0.74 132323 90 994 127314 0.77 128308 91 915 128290 0.71 129205 92 881 125788 0.70 126669 93 903 120698 0.74 121601 94 874 119423 0.73 120297 95 995 122260 0.81 123255 96 893 117007 0.76 117900 97 839 115377 0.72 116216 98 750 111058 0.67 111808 99 588 0 100.00 588 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 73462 381426 16.15 454888 2 60623 317109 16.05 377732 3 61304 325594 15.85 386898 4 62035 317930 16.33 379965 5 8673 602556 1.42 611229 6 9068 849853 1.06 858921 7 9973 1128244 0.88 1138217 8 9691 1119239 0.86 1128930 9 10354 1053832 0.97 1064186 10 9713 1080464 0.89 1090177 11 9947 1061831 0.93 1071778 12 9629 990930 0.96 1000559 13 9356 1022602 0.91 1031958 14 9714 1030743 0.93 1040457 15 9615 1039180 0.92 1048795 16 8759 993621 0.87 1002380 17 9477 994259 0.94 1003736 18 9378 990042 0.94 999420 19 8393 932605 0.89 940998 20 9575 968088 0.98 977663 21 8931 921816 0.96 930747 22 9125 905020 1.00 914145 23 8679 885719 0.97 894398 24 8462 854469 0.98 862931 25 9083 855701 1.05 864784 26 8528 851658 0.99 860186 27 9001 888868 1.00 897869 28 8582 860982 0.99 869564 29 8604 847786 1.00 856390 30 8857 826810 1.06 835667 31 8624 815166 1.05 823790 32 8123 800720 1.00 808843 33 8576 786815 1.08 795391 34 8182 780640 1.04 788822 35 8879 799695 1.10 808574 36 8183 792136 1.02 800319 37 8140 782875 1.03 791015 38 8710 806529 1.07 815239 39 8408 759009 1.10 767417 40 7929 780517 1.01 788446 41 8140 751195 1.07 759335 42 8261 753901 1.08 762162 43 8039 726719 1.09 734758 44 7649 728146 1.04 735795 45 8069 725971 1.10 734040 46 7768 732485 1.05 740253 47 7462 723842 1.02 731304 48 7631 706376 1.07 714007 49 7506 710096 1.05 717602 50 7644 703447 1.07 711091 51 7457 687424 1.07 694881 52 6974 655105 1.05 662079 53 7259 656521 1.09 663780 54 7075 642307 1.09 649382 55 6854 652791 1.04 659645 56 6911 641737 1.07 648648 57 6715 650567 1.02 657282 58 6444 634556 1.01 641000 59 6515 615495 1.05 622010 60 6213 628913 0.98 635126 61 6317 606186 1.03 612503 62 5937 601154 0.98 607091 63 5982 598011 0.99 603993 64 5836 581574 0.99 587410 65 5583 585884 0.94 591467 66 5757 568654 1.00 574411 67 5432 565980 0.95 571412 68 5643 579504 0.96 585147 69 5660 566223 0.99 571883 70 5585 552596 1.00 558181 71 5275 547807 0.95 553082 72 5618 540352 1.03 545970 73 5180 537068 0.96 542248 74 5275 536602 0.97 541877 75 5245 534995 0.97 540240 76 5030 518446 0.96 523476 77 5362 515804 1.03 521166 78 5317 516611 1.02 521928 79 5177 521006 0.98 526183 80 5133 505583 1.01 510716 81 5137 501624 1.01 506761 82 5020 497129 1.00 502149 83 4791 492673 0.96 497464 84 5152 489924 1.04 495076 85 4858 481176 1.00 486034 86 4766 480487 0.98 485253 87 4604 473578 0.96 478182 88 4500 463532 0.96 468032 89 4594 461313 0.99 465907 90 4550 460739 0.98 465289 91 4390 457053 0.95 461443 92 4355 453805 0.95 458160 93 4358 444862 0.97 449220 94 4283 437334 0.97 441617 95 4315 432780 0.99 437095 96 4064 426326 0.94 430390 97 3900 424340 0.91 428240 98 3553 400278 0.88 403831 99 2446 0 100.00 2446