Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-128_S34_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-128_S34_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 24557803
Paired-end alignments with a unique best hit 15508931
Pairs without alignments under any condition 4731553
Pairs that did not map uniquely 4317319
Genomic sequence context not extractable (edges of chromosomes) 57568

Cytosine Methylation

Total C's analysed 494078434
Methylated C's in CpG context 14815617
Methylated C's in CHG context 2322417
Methylated C's in CHH context 4632145
Methylated C's in Unknown context 137766
Unmethylated C's in CpG context 58833165
Unmethylated C's in CHG context 102887585
Unmethylated C's in CHH context 310587505
Unmethylated C's in Unknown context 2092413
Percentage methylation (CpG context) 20.1%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7617335 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7834028 original bottom strand