EPI-127_S33_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 11419837 lines in total Total number of methylation call strings processed: 22839674 Final Cytosine Methylation Report ================================= Total number of C's analysed: 270599486 Total methylated C's in CpG context: 9458882 Total methylated C's in CHG context: 1348956 Total methylated C's in CHH context: 3125061 Total C to T conversions in CpG context: 28031269 Total C to T conversions in CHG context: 55284830 Total C to T conversions in CHH context: 173350488 C methylated in CpG context: 25.2% C methylated in CHG context: 2.4% C methylated in CHH context: 1.8%