CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 223652 378896 37.12 602548 2 207761 407203 33.78 614964 3 185862 351602 34.58 537464 4 186920 259294 41.89 446214 5 177581 219465 44.73 397046 6 177751 187552 48.66 365303 7 192876 181021 51.59 373897 8 86903 209450 29.32 296353 9 77614 192420 28.74 270034 10 77934 183554 29.80 261488 11 79655 188226 29.74 267881 12 76786 192736 28.49 269522 13 74685 196053 27.59 270738 14 70596 194937 26.59 265533 15 68188 197294 25.68 265482 16 62788 192341 24.61 255129 17 58943 187571 23.91 246514 18 60977 189928 24.30 250905 19 60428 192827 23.86 253255 20 60771 194101 23.84 254872 21 61738 197096 23.85 258834 22 60766 194764 23.78 255530 23 59949 193274 23.67 253223 24 59279 192112 23.58 251391 25 57583 191254 23.14 248837 26 58118 187032 23.71 245150 27 57678 193878 22.93 251556 28 60635 192028 24.00 252663 29 58315 196983 22.84 255298 30 57420 192914 22.94 250334 31 58441 190645 23.46 249086 32 57116 186018 23.49 243134 33 58353 187677 23.72 246030 34 58950 187402 23.93 246352 35 57513 186264 23.59 243777 36 56674 189928 22.98 246602 37 55552 186088 22.99 241640 38 55377 186518 22.89 241895 39 56950 188359 23.22 245309 40 57164 185460 23.56 242624 41 57198 187224 23.40 244422 42 58238 189882 23.47 248120 43 57378 188483 23.34 245861 44 56446 186289 23.25 242735 45 57606 186721 23.58 244327 46 58269 188161 23.65 246430 47 57863 184686 23.86 242549 48 57426 186370 23.55 243796 49 59361 185756 24.22 245117 50 56685 189312 23.04 245997 51 57073 187959 23.29 245032 52 57260 194973 22.70 252233 53 55923 186047 23.11 241970 54 55082 184826 22.96 239908 55 55030 180580 23.36 235610 56 55077 179183 23.51 234260 57 55784 181300 23.53 237084 58 56383 182019 23.65 238402 59 56849 181174 23.88 238023 60 55434 181971 23.35 237405 61 56892 180301 23.99 237193 62 55036 183806 23.04 238842 63 54181 181271 23.01 235452 64 53948 180979 22.96 234927 65 55134 178140 23.63 233274 66 55702 178342 23.80 234044 67 54768 176280 23.70 231048 68 53583 175490 23.39 229073 69 52911 173238 23.40 226149 70 52961 174081 23.33 227042 71 51595 171593 23.12 223188 72 51997 171644 23.25 223641 73 51719 170069 23.32 221788 74 50626 168700 23.08 219326 75 49787 168377 22.82 218164 76 49772 165949 23.07 215721 77 50698 165010 23.50 215708 78 49694 166681 22.97 216375 79 49381 164338 23.11 213719 80 48270 163895 22.75 212165 81 48162 162188 22.90 210350 82 46978 161991 22.48 208969 83 47627 162738 22.64 210365 84 47810 163963 22.58 211773 85 47193 161535 22.61 208728 86 46139 158370 22.56 204509 87 45652 158587 22.35 204239 88 45775 157781 22.49 203556 89 45116 155628 22.47 200744 90 45198 156188 22.44 201386 91 44795 152335 22.72 197130 92 43387 152604 22.14 195991 93 43023 152822 21.97 195845 94 43701 150393 22.52 194094 95 43166 149666 22.39 192832 96 43430 151895 22.23 195325 97 41716 145410 22.29 187126 98 39014 136685 22.21 175699 99 30378 108657 21.85 139035 100 40164 137683 22.58 177847 101 36829 136568 21.24 173397 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 337943 358263 48.54 696206 2 198453 320851 38.22 519304 3 74670 317469 19.04 392139 4 34834 329165 9.57 363999 5 21239 310344 6.41 331583 6 18188 294449 5.82 312637 7 13175 381431 3.34 394606 8 5447 416606 1.29 422053 9 4368 388344 1.11 392712 10 4433 367168 1.19 371601 11 4584 369680 1.22 374264 12 4387 370870 1.17 375257 13 3975 354937 1.11 358912 14 3454 357217 0.96 360671 15 3503 366000 0.95 369503 16 3142 366022 0.85 369164 17 3374 362771 0.92 366145 18 3278 361209 0.90 364487 19 2783 362138 0.76 364921 20 3004 380346 0.78 383350 21 2919 386662 0.75 389581 22 2945 380622 0.77 383567 23 3138 386727 0.80 389865 24 2901 389663 0.74 392564 25 2978 375176 0.79 378154 26 3383 379884 0.88 383267 27 3062 384635 0.79 387697 28 3028 383328 0.78 386356 29 3409 387313 0.87 390722 30 3042 390128 0.77 393170 31 2890 382093 0.75 384983 32 2859 383619 0.74 386478 33 2925 384999 0.75 387924 34 2865 379780 0.75 382645 35 3130 382850 0.81 385980 36 2978 383731 0.77 386709 37 2877 373937 0.76 376814 38 2969 379218 0.78 382187 39 2947 376707 0.78 379654 40 2855 377953 0.75 380808 41 2943 377274 0.77 380217 42 2870 379609 0.75 382479 43 2778 374841 0.74 377619 44 2801 381523 0.73 384324 45 2960 378996 0.77 381956 46 2824 376854 0.74 379678 47 3015 376859 0.79 379874 48 2953 384709 0.76 387662 49 2945 375569 0.78 378514 50 3123 378640 0.82 381763 51 2924 380894 0.76 383818 52 2906 379623 0.76 382529 53 3118 376344 0.82 379462 54 3099 383860 0.80 386959 55 2939 376595 0.77 379534 56 3103 379299 0.81 382402 57 3246 378859 0.85 382105 58 3533 376724 0.93 380257 59 3449 381192 0.90 384641 60 3327 383121 0.86 386448 61 3388 380090 0.88 383478 62 3667 380466 0.95 384133 63 3570 376584 0.94 380154 64 3661 376479 0.96 380140 65 3920 374157 1.04 378077 66 3633 369582 0.97 373215 67 3562 361552 0.98 365114 68 3847 365289 1.04 369136 69 3640 365443 0.99 369083 70 3465 359194 0.96 362659 71 3500 359076 0.97 362576 72 3529 359328 0.97 362857 73 3513 353893 0.98 357406 74 3621 351264 1.02 354885 75 3516 353018 0.99 356534 76 3484 346046 1.00 349530 77 3572 348254 1.02 351826 78 3351 343577 0.97 346928 79 3427 337550 1.01 340977 80 3331 337218 0.98 340549 81 3445 335257 1.02 338702 82 3387 331284 1.01 334671 83 3403 335747 1.00 339150 84 3376 336125 0.99 339501 85 3580 328019 1.08 331599 86 3532 332106 1.05 335638 87 3546 331454 1.06 335000 88 3431 325172 1.04 328603 89 3719 324701 1.13 328420 90 3580 325750 1.09 329330 91 3743 319370 1.16 323113 92 3740 320993 1.15 324733 93 3885 319029 1.20 322914 94 3752 313239 1.18 316991 95 3824 312035 1.21 315859 96 3899 310304 1.24 314203 97 3792 283027 1.32 286819 98 3397 261846 1.28 265243 99 2293 169098 1.34 171391 100 2533 171622 1.45 174155 101 4836 279134 1.70 283970 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 284172 382238 42.64 666410 2 134672 407693 24.83 542365 3 65292 538358 10.82 603650 4 55419 580903 8.71 636322 5 49395 703595 6.56 752990 6 39949 780747 4.87 820696 7 34517 1022887 3.26 1057404 8 20816 1110584 1.84 1131400 9 16093 1014218 1.56 1030311 10 16051 991159 1.59 1007210 11 18741 995672 1.85 1014413 12 16449 1022509 1.58 1038958 13 18074 1047723 1.70 1065797 14 18920 1074956 1.73 1093876 15 16673 1104829 1.49 1121502 16 16010 1130823 1.40 1146833 17 18001 1137930 1.56 1155931 18 16083 1183266 1.34 1199349 19 16083 1208799 1.31 1224882 20 18307 1245679 1.45 1263986 21 16279 1244637 1.29 1260916 22 17198 1244259 1.36 1261457 23 18514 1244009 1.47 1262523 24 16038 1246014 1.27 1262052 25 17132 1253881 1.35 1271013 26 18153 1263224 1.42 1281377 27 16682 1265660 1.30 1282342 28 16287 1269431 1.27 1285718 29 18397 1263411 1.44 1281808 30 16213 1250975 1.28 1267188 31 16500 1232657 1.32 1249157 32 17748 1245183 1.41 1262931 33 15897 1241017 1.26 1256914 34 17803 1249431 1.40 1267234 35 18392 1241928 1.46 1260320 36 16528 1250949 1.30 1267477 37 15896 1244099 1.26 1259995 38 18208 1250269 1.44 1268477 39 16088 1244728 1.28 1260816 40 16408 1247513 1.30 1263921 41 18716 1252422 1.47 1271138 42 16922 1262776 1.32 1279698 43 17575 1246887 1.39 1264462 44 17902 1254074 1.41 1271976 45 16914 1245600 1.34 1262514 46 16820 1251016 1.33 1267836 47 17730 1247558 1.40 1265288 48 15816 1247849 1.25 1263665 49 16274 1233376 1.30 1249650 50 17877 1234746 1.43 1252623 51 15945 1222067 1.29 1238012 52 16735 1220838 1.35 1237573 53 17614 1215319 1.43 1232933 54 15994 1217626 1.30 1233620 55 16605 1218423 1.34 1235028 56 17700 1217495 1.43 1235195 57 15843 1233762 1.27 1249605 58 17718 1219938 1.43 1237656 59 18246 1235632 1.46 1253878 60 16012 1219477 1.30 1235489 61 17000 1211319 1.38 1228319 62 17451 1205771 1.43 1223222 63 15845 1195190 1.31 1211035 64 16943 1189410 1.40 1206353 65 17266 1189300 1.43 1206566 66 15778 1183245 1.32 1199023 67 16040 1178058 1.34 1194098 68 17000 1174428 1.43 1191428 69 15847 1166204 1.34 1182051 70 15890 1166925 1.34 1182815 71 17225 1159689 1.46 1176914 72 15602 1158456 1.33 1174058 73 16918 1146660 1.45 1163578 74 17124 1144456 1.47 1161580 75 15568 1138258 1.35 1153826 76 15711 1131816 1.37 1147527 77 17020 1125119 1.49 1142139 78 14830 1119693 1.31 1134523 79 15454 1114066 1.37 1129520 80 16794 1110251 1.49 1127045 81 15420 1095886 1.39 1111306 82 15980 1089022 1.45 1105002 83 16679 1093231 1.50 1109910 84 15042 1078924 1.37 1093966 85 15143 1069026 1.40 1084169 86 15725 1063470 1.46 1079195 87 14541 1059097 1.35 1073638 88 14362 1055651 1.34 1070013 89 15987 1046707 1.50 1062694 90 14422 1041128 1.37 1055550 91 14745 1029470 1.41 1044215 92 15489 1029544 1.48 1045033 93 14359 1021804 1.39 1036163 94 14474 1012857 1.41 1027331 95 15726 1003909 1.54 1019635 96 14174 986727 1.42 1000901 97 14133 960465 1.45 974598 98 14290 895002 1.57 909292 99 9014 620444 1.43 629458 100 9559 555249 1.69 564808 101 13933 900060 1.52 913993 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 135501 189468 41.70 324969 2 122177 174608 41.17 296785 3 131371 193563 40.43 324934 4 125432 217901 36.53 343333 5 52975 272544 16.27 325519 6 31089 147409 17.42 178498 7 28378 159391 15.11 187769 8 29936 150931 16.55 180867 9 27014 133798 16.80 160812 10 30285 145990 17.18 176275 11 32022 142761 18.32 174783 12 31219 138934 18.35 170153 13 31835 135153 19.06 166988 14 33182 136355 19.57 169537 15 32567 124956 20.67 157523 16 31576 122964 20.43 154540 17 37179 132954 21.85 170133 18 36291 127005 22.22 163296 19 34973 122300 22.24 157273 20 32511 120265 21.28 152776 21 34331 118220 22.50 152551 22 33806 121851 21.72 155657 23 32153 117458 21.49 149611 24 30852 112214 21.56 143066 25 33492 118837 21.99 152329 26 31236 113280 21.61 144516 27 33563 113949 22.75 147512 28 31527 110468 22.20 141995 29 32375 114965 21.97 147340 30 31329 107079 22.64 138408 31 30026 108739 21.64 138765 32 29417 103969 22.05 133386 33 31307 103906 23.15 135213 34 30851 106673 22.43 137524 35 36727 112657 24.59 149384 36 31469 103873 23.25 135342 37 31837 106647 22.99 138484 38 29147 102548 22.13 131695 39 30399 100097 23.29 130496 40 31994 101532 23.96 133526 41 29187 97781 22.99 126968 42 29277 99425 22.75 128702 43 30004 98710 23.31 128714 44 27614 95909 22.36 123523 45 32368 100934 24.28 133302 46 27378 91828 22.97 119206 47 27886 91728 23.31 119614 48 27332 90146 23.27 117478 49 26695 92123 22.47 118818 50 25304 87094 22.51 112398 51 25582 86841 22.76 112423 52 26314 88235 22.97 114549 53 26546 84813 23.84 111359 54 25461 85059 23.04 110520 55 25657 83427 23.52 109084 56 23954 82904 22.42 106858 57 24584 80543 23.39 105127 58 24218 81241 22.96 105459 59 23441 77442 23.24 100883 60 24142 78059 23.62 102201 61 21941 76252 22.34 98193 62 21732 75040 22.46 96772 63 22868 73784 23.66 96652 64 21833 74077 22.76 95910 65 21417 69810 23.48 91227 66 22340 71715 23.75 94055 67 20682 71389 22.46 92071 68 22278 72674 23.46 94952 69 20447 69955 22.62 90402 70 20263 69867 22.48 90130 71 20672 64800 24.19 85472 72 19885 65041 23.41 84926 73 19798 66140 23.04 85938 74 18399 63586 22.44 81985 75 18566 63784 22.55 82350 76 18755 62056 23.21 80811 77 18267 61884 22.79 80151 78 18467 61703 23.03 80170 79 17426 60067 22.49 77493 80 17072 58275 22.66 75347 81 17295 58862 22.71 76157 82 17312 58642 22.79 75954 83 17142 56445 23.29 73587 84 18413 59389 23.67 77802 85 16651 56790 22.67 73441 86 16286 56399 22.41 72685 87 16004 54934 22.56 70938 88 16074 54860 22.66 70934 89 16822 54177 23.69 70999 90 16583 53260 23.74 69843 91 16042 52333 23.46 68375 92 15357 51492 22.97 66849 93 15293 52173 22.67 67466 94 15863 51650 23.50 67513 95 15618 50735 23.54 66353 96 15230 50272 23.25 65502 97 15867 50843 23.79 66710 98 14524 46708 23.72 61232 99 12588 0 100.00 12588 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 47081 251324 15.78 298405 2 49900 257115 16.25 307015 3 46773 262232 15.14 309005 4 51636 272665 15.92 324301 5 3779 497805 0.75 501584 6 2852 596276 0.48 599128 7 1890 328840 0.57 330730 8 1824 351636 0.52 353460 9 1715 300178 0.57 301893 10 1745 289298 0.60 291043 11 2272 362328 0.62 364600 12 1826 302765 0.60 304591 13 1860 301817 0.61 303677 14 1876 295868 0.63 297744 15 1827 281566 0.64 283393 16 1655 264510 0.62 266165 17 1969 282701 0.69 284670 18 2002 251683 0.79 253685 19 1869 251686 0.74 253555 20 1820 248425 0.73 250245 21 2053 239287 0.85 241340 22 1824 256833 0.71 258657 23 1830 256199 0.71 258029 24 1667 234307 0.71 235974 25 1764 239393 0.73 241157 26 1865 248230 0.75 250095 27 1767 231587 0.76 233354 28 1729 220800 0.78 222529 29 1866 235780 0.79 237646 30 1872 229827 0.81 231699 31 1771 221749 0.79 223520 32 1643 226288 0.72 227931 33 1832 250709 0.73 252541 34 1729 220205 0.78 221934 35 1852 223785 0.82 225637 36 1744 222745 0.78 224489 37 1589 209396 0.75 210985 38 1772 216067 0.81 217839 39 1684 208238 0.80 209922 40 1741 201943 0.85 203684 41 1795 200185 0.89 201980 42 1830 189429 0.96 191259 43 1864 193562 0.95 195426 44 1653 195472 0.84 197125 45 1653 181869 0.90 183522 46 1658 183541 0.90 185199 47 1714 187797 0.90 189511 48 1653 181359 0.90 183012 49 1665 184195 0.90 185860 50 1773 180102 0.97 181875 51 1743 169820 1.02 171563 52 1790 170076 1.04 171866 53 2256 186508 1.20 188764 54 1686 171462 0.97 173148 55 1641 169383 0.96 171024 56 1615 170047 0.94 171662 57 1633 162091 1.00 163724 58 1501 161680 0.92 163181 59 1410 165273 0.85 166683 60 1225 156269 0.78 157494 61 1141 157547 0.72 158688 62 1158 160361 0.72 161519 63 1177 160687 0.73 161864 64 1040 148431 0.70 149471 65 1145 155431 0.73 156576 66 1011 144358 0.70 145369 67 1145 153012 0.74 154157 68 1051 150261 0.69 151312 69 1055 148063 0.71 149118 70 1005 146272 0.68 147277 71 1029 148392 0.69 149421 72 960 138508 0.69 139468 73 985 137938 0.71 138923 74 925 142236 0.65 143161 75 1041 136744 0.76 137785 76 869 130889 0.66 131758 77 932 137833 0.67 138765 78 922 130961 0.70 131883 79 942 131750 0.71 132692 80 894 127621 0.70 128515 81 847 122677 0.69 123524 82 908 121482 0.74 122390 83 929 122815 0.75 123744 84 842 118039 0.71 118881 85 868 126988 0.68 127856 86 879 119057 0.73 119936 87 882 118057 0.74 118939 88 861 113636 0.75 114497 89 924 119254 0.77 120178 90 875 115409 0.75 116284 91 861 117219 0.73 118080 92 857 113125 0.75 113982 93 855 109267 0.78 110122 94 818 107460 0.76 108278 95 894 110194 0.80 111088 96 829 105313 0.78 106142 97 805 104123 0.77 104928 98 691 100152 0.69 100843 99 501 0 100.00 501 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 70112 349941 16.69 420053 2 58208 291618 16.64 349826 3 59498 299059 16.59 358557 4 59963 292883 16.99 352846 5 9189 558707 1.62 567896 6 9295 781740 1.18 791035 7 10376 1039970 0.99 1050346 8 9824 1033784 0.94 1043608 9 10591 970805 1.08 981396 10 10237 994005 1.02 1004242 11 10170 976572 1.03 986742 12 9954 912749 1.08 922703 13 9740 938810 1.03 948550 14 9859 947863 1.03 957722 15 9451 953524 0.98 962975 16 9091 913667 0.99 922758 17 9830 914422 1.06 924252 18 9447 909290 1.03 918737 19 8583 857940 0.99 866523 20 9761 892393 1.08 902154 21 9155 847832 1.07 856987 22 9336 830434 1.11 839770 23 9225 811867 1.12 821092 24 8640 784473 1.09 793113 25 9296 785034 1.17 794330 26 8658 781279 1.10 789937 27 9248 816876 1.12 826124 28 8739 791126 1.09 799865 29 8572 776969 1.09 785541 30 8993 759474 1.17 768467 31 8707 748587 1.15 757294 32 8293 733845 1.12 742138 33 8851 720054 1.21 728905 34 8219 714927 1.14 723146 35 8803 733304 1.19 742107 36 8428 725930 1.15 734358 37 8181 717571 1.13 725752 38 8840 739753 1.18 748593 39 8708 694777 1.24 703485 40 8300 711137 1.15 719437 41 8377 685009 1.21 693386 42 8445 690611 1.21 699056 43 8379 667363 1.24 675742 44 7813 664899 1.16 672712 45 8147 662515 1.21 670662 46 7854 668833 1.16 676687 47 7589 658164 1.14 665753 48 7709 644436 1.18 652145 49 7523 645879 1.15 653402 50 7441 639727 1.15 647168 51 7556 625168 1.19 632724 52 7205 595588 1.20 602793 53 7210 598385 1.19 605595 54 6995 584600 1.18 591595 55 6855 595191 1.14 602046 56 6912 583093 1.17 590005 57 6775 590283 1.13 597058 58 6569 577659 1.12 584228 59 6468 560283 1.14 566751 60 6386 571499 1.11 577885 61 6420 550557 1.15 556977 62 6221 546226 1.13 552447 63 5846 541049 1.07 546895 64 6069 527653 1.14 533722 65 5644 530906 1.05 536550 66 5760 516040 1.10 521800 67 5587 515012 1.07 520599 68 5727 526003 1.08 531730 69 5758 513884 1.11 519642 70 5551 501854 1.09 507405 71 5488 496671 1.09 502159 72 5734 490989 1.15 496723 73 5422 486454 1.10 491876 74 5205 486636 1.06 491841 75 5357 485364 1.09 490721 76 5052 468376 1.07 473428 77 5376 465269 1.14 470645 78 5306 466932 1.12 472238 79 5138 471084 1.08 476222 80 5143 456424 1.11 461567 81 5238 452887 1.14 458125 82 5249 448866 1.16 454115 83 4812 445128 1.07 449940 84 5085 441548 1.14 446633 85 4995 434115 1.14 439110 86 4748 432831 1.09 437579 87 4811 426839 1.11 431650 88 4587 416962 1.09 421549 89 4578 414253 1.09 418831 90 4721 414558 1.13 419279 91 4607 411451 1.11 416058 92 4373 406624 1.06 410997 93 4343 401796 1.07 406139 94 4391 393448 1.10 397839 95 4346 389023 1.10 393369 96 4132 382793 1.07 386925 97 4099 380174 1.07 384273 98 3513 358922 0.97 362435 99 2511 0 100.00 2511