Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-127_S33_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-127_S33_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 22262118
Paired-end alignments with a unique best hit 14156647
Pairs without alignments under any condition 4255255
Pairs that did not map uniquely 3850216
Genomic sequence context not extractable (edges of chromosomes) 45994

Cytosine Methylation

Total C's analysed 453982272
Methylated C's in CpG context 13614684
Methylated C's in CHG context 2108552
Methylated C's in CHH context 4652553
Methylated C's in Unknown context 142849
Unmethylated C's in CpG context 53426305
Unmethylated C's in CHG context 94970218
Unmethylated C's in CHH context 285209960
Unmethylated C's in Unknown context 2001531
Percentage methylation (CpG context) 20.3%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6976245 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7134408 original bottom strand