EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 12688900 lines in total Total number of methylation call strings processed: 25377800 Final Cytosine Methylation Report ================================= Total number of C's analysed: 298191131 Total methylated C's in CpG context: 10186869 Total methylated C's in CHG context: 1462308 Total methylated C's in CHH context: 3226983 Total C to T conversions in CpG context: 30850360 Total C to T conversions in CHG context: 60956834 Total C to T conversions in CHH context: 191507777 C methylated in CpG context: 24.8% C methylated in CHG context: 2.3% C methylated in CHH context: 1.7%