CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 239046 422302 36.15 661348 2 218244 445917 32.86 664161 3 194081 390056 33.23 584137 4 196324 290974 40.29 487298 5 185870 242020 43.44 427890 6 183512 209014 46.75 392526 7 201864 202575 49.91 404439 8 95232 233325 28.98 328557 9 85751 213744 28.63 299495 10 86629 204539 29.75 291168 11 90473 208275 30.28 298748 12 87253 214383 28.93 301636 13 85195 219332 27.98 304527 14 79333 217130 26.76 296463 15 75658 219047 25.67 294705 16 70064 213064 24.75 283128 17 65207 207883 23.88 273090 18 67890 211273 24.32 279163 19 66682 214189 23.74 280871 20 67210 216286 23.71 283496 21 68265 219117 23.75 287382 22 66262 216645 23.42 282907 23 66072 214333 23.56 280405 24 65196 213350 23.41 278546 25 62848 212195 22.85 275043 26 63556 209135 23.31 272691 27 63686 214694 22.88 278380 28 65192 211384 23.57 276576 29 63478 218616 22.50 282094 30 62043 213006 22.56 275049 31 63669 210590 23.21 274259 32 62066 206458 23.11 268524 33 63005 207914 23.26 270919 34 63972 207356 23.58 271328 35 62224 206268 23.18 268492 36 62072 210483 22.77 272555 37 60474 206207 22.68 266681 38 59884 205671 22.55 265555 39 61252 207758 22.77 269010 40 62289 205602 23.25 267891 41 62477 206808 23.20 269285 42 62475 210044 22.93 272519 43 62041 208768 22.91 270809 44 61412 206783 22.90 268195 45 62210 206536 23.15 268746 46 63418 207995 23.37 271413 47 62716 204558 23.47 267274 48 62677 207004 23.24 269681 49 64136 205529 23.78 269665 50 61436 208295 22.78 269731 51 62386 207348 23.13 269734 52 62291 216142 22.37 278433 53 61318 206106 22.93 267424 54 60064 204488 22.70 264552 55 60136 199686 23.15 259822 56 59370 197355 23.13 256725 57 60954 199670 23.39 260624 58 61078 200206 23.38 261284 59 61702 200634 23.52 262336 60 60045 201538 22.95 261583 61 61358 199404 23.53 260762 62 59663 202940 22.72 262603 63 58539 200232 22.62 258771 64 59078 199995 22.80 259073 65 59506 195564 23.33 255070 66 59789 197666 23.22 257455 67 59560 194071 23.48 253631 68 58258 193236 23.16 251494 69 57017 191617 22.93 248634 70 57126 191499 22.98 248625 71 56314 190427 22.82 246741 72 56291 189537 22.90 245828 73 55867 186885 23.01 242752 74 54840 185193 22.85 240033 75 54213 184279 22.73 238492 76 53780 182887 22.72 236667 77 54785 182374 23.10 237159 78 54190 182655 22.88 236845 79 52947 180527 22.68 233474 80 51856 179792 22.39 231648 81 51262 178579 22.30 229841 82 49904 176687 22.02 226591 83 51086 178289 22.27 229375 84 51514 178748 22.37 230262 85 51011 176842 22.39 227853 86 50019 173432 22.38 223451 87 48733 172740 22.00 221473 88 49001 171982 22.17 220983 89 48232 169489 22.15 217721 90 48255 170003 22.11 218258 91 48050 167264 22.32 215314 92 46812 166223 21.97 213035 93 46730 166988 21.87 213718 94 46921 163896 22.26 210817 95 46143 163204 22.04 209347 96 46530 166092 21.88 212622 97 44857 158628 22.04 203485 98 41925 150020 21.84 191945 99 32753 118000 21.73 150753 100 43011 150915 22.18 193926 101 39189 147464 21.00 186653 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 363862 414203 46.76 778065 2 215328 367928 36.92 583256 3 83692 361032 18.82 444724 4 36544 376851 8.84 413395 5 21023 352404 5.63 373427 6 17155 344358 4.75 361513 7 13620 435489 3.03 449109 8 5951 468032 1.26 473983 9 4842 430933 1.11 435775 10 4928 408332 1.19 413260 11 5067 411231 1.22 416298 12 4940 413721 1.18 418661 13 4492 396967 1.12 401459 14 3961 396927 0.99 400888 15 3761 405552 0.92 409313 16 3494 405830 0.85 409324 17 3583 401383 0.88 404966 18 3643 400973 0.90 404616 19 3150 401448 0.78 404598 20 3307 421228 0.78 424535 21 3113 428035 0.72 431148 22 3372 423659 0.79 427031 23 3466 427223 0.80 430689 24 3254 431354 0.75 434608 25 3130 415481 0.75 418611 26 3647 423849 0.85 427496 27 3247 426313 0.76 429560 28 3154 424529 0.74 427683 29 3509 429127 0.81 432636 30 3325 433400 0.76 436725 31 3259 425121 0.76 428380 32 3155 426591 0.73 429746 33 3232 427756 0.75 430988 34 3160 421055 0.74 424215 35 3356 424916 0.78 428272 36 3266 425901 0.76 429167 37 3195 416470 0.76 419665 38 3425 420767 0.81 424192 39 3304 418962 0.78 422266 40 3119 416925 0.74 420044 41 3133 419319 0.74 422452 42 3214 422347 0.76 425561 43 3113 415869 0.74 418982 44 3113 421405 0.73 424518 45 3219 422371 0.76 425590 46 3072 417939 0.73 421011 47 3227 419029 0.76 422256 48 3174 424433 0.74 427607 49 3117 416765 0.74 419882 50 3303 419132 0.78 422435 51 3331 421717 0.78 425048 52 3176 419569 0.75 422745 53 3289 418727 0.78 422016 54 3521 424228 0.82 427749 55 3407 417824 0.81 421231 56 3460 421116 0.81 424576 57 3407 421144 0.80 424551 58 4076 416422 0.97 420498 59 3648 420463 0.86 424111 60 3849 425137 0.90 428986 61 3803 419079 0.90 422882 62 3956 421888 0.93 425844 63 3816 416363 0.91 420179 64 3997 415162 0.95 419159 65 4289 413144 1.03 417433 66 4092 408730 0.99 412822 67 4044 399412 1.00 403456 68 4069 401864 1.00 405933 69 3890 401643 0.96 405533 70 3940 396879 0.98 400819 71 4053 396370 1.01 400423 72 3889 395797 0.97 399686 73 3839 388148 0.98 391987 74 3898 387928 0.99 391826 75 3873 390286 0.98 394159 76 3867 380409 1.01 384276 77 4051 382050 1.05 386101 78 3868 377406 1.01 381274 79 3659 371144 0.98 374803 80 3834 370492 1.02 374326 81 3855 367204 1.04 371059 82 3797 362499 1.04 366296 83 3905 368598 1.05 372503 84 3947 368412 1.06 372359 85 3945 360508 1.08 364453 86 3987 364298 1.08 368285 87 3984 363809 1.08 367793 88 3847 356153 1.07 360000 89 3914 354371 1.09 358285 90 3933 355368 1.09 359301 91 4033 348353 1.14 352386 92 4147 349775 1.17 353922 93 4232 348083 1.20 352315 94 4193 342548 1.21 346741 95 4161 341070 1.21 345231 96 4228 338624 1.23 342852 97 4068 309474 1.30 313542 98 3864 284729 1.34 288593 99 2405 184185 1.29 186590 100 2742 187760 1.44 190502 101 5417 303281 1.75 308698 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 318924 457495 41.08 776419 2 148892 483705 23.54 632597 3 68219 618522 9.93 686741 4 54388 672291 7.48 726679 5 47530 802580 5.59 850110 6 38259 884584 4.15 922843 7 34669 1126092 2.99 1160761 8 21205 1208030 1.73 1229235 9 16663 1106079 1.48 1122742 10 16360 1081891 1.49 1098251 11 18831 1085707 1.70 1104538 12 16733 1112587 1.48 1129320 13 18381 1140332 1.59 1158713 14 18705 1173483 1.57 1192188 15 17001 1209225 1.39 1226226 16 16595 1240098 1.32 1256693 17 18050 1251020 1.42 1269070 18 16765 1300266 1.27 1317031 19 16388 1331782 1.22 1348170 20 18228 1372532 1.31 1390760 21 16523 1379411 1.18 1395934 22 17379 1381010 1.24 1398389 23 18744 1383060 1.34 1401804 24 16796 1385465 1.20 1402261 25 17524 1394905 1.24 1412429 26 18825 1407868 1.32 1426693 27 16812 1413709 1.18 1430521 28 16963 1415198 1.18 1432161 29 18353 1411657 1.28 1430010 30 16723 1398627 1.18 1415350 31 16547 1379299 1.19 1395846 32 17817 1390072 1.27 1407889 33 16161 1386518 1.15 1402679 34 17977 1395205 1.27 1413182 35 18372 1385964 1.31 1404336 36 16784 1395638 1.19 1412422 37 16455 1391341 1.17 1407796 38 18329 1397507 1.29 1415836 39 16731 1388968 1.19 1405699 40 17128 1392712 1.21 1409840 41 18739 1396129 1.32 1414868 42 17486 1407246 1.23 1424732 43 17820 1389465 1.27 1407285 44 18148 1397744 1.28 1415892 45 17370 1388855 1.24 1406225 46 17038 1392977 1.21 1410015 47 18057 1390173 1.28 1408230 48 16461 1392835 1.17 1409296 49 16561 1376334 1.19 1392895 50 17915 1374322 1.29 1392237 51 16214 1362638 1.18 1378852 52 16986 1361308 1.23 1378294 53 17731 1354011 1.29 1371742 54 16189 1357833 1.18 1374022 55 16757 1359606 1.22 1376363 56 17677 1356105 1.29 1373782 57 16360 1371237 1.18 1387597 58 18173 1357451 1.32 1375624 59 18458 1374304 1.33 1392762 60 16205 1352707 1.18 1368912 61 17187 1347061 1.26 1364248 62 17723 1338103 1.31 1355826 63 16226 1326122 1.21 1342348 64 17189 1318480 1.29 1335669 65 17525 1317420 1.31 1334945 66 16548 1311503 1.25 1328051 67 16483 1304706 1.25 1321189 68 17207 1299353 1.31 1316560 69 16162 1295030 1.23 1311192 70 16465 1291865 1.26 1308330 71 17271 1283624 1.33 1300895 72 16008 1279920 1.24 1295928 73 17107 1269654 1.33 1286761 74 17530 1266019 1.37 1283549 75 15955 1258624 1.25 1274579 76 16133 1251699 1.27 1267832 77 17260 1242308 1.37 1259568 78 15347 1233940 1.23 1249287 79 15728 1228107 1.26 1243835 80 16536 1221621 1.34 1238157 81 15624 1210429 1.27 1226053 82 15950 1200925 1.31 1216875 83 16563 1205215 1.36 1221778 84 15474 1190600 1.28 1206074 85 15163 1177201 1.27 1192364 86 15902 1168980 1.34 1184882 87 14606 1164767 1.24 1179373 88 14709 1159761 1.25 1174470 89 15771 1149086 1.35 1164857 90 14706 1146222 1.27 1160928 91 14947 1132854 1.30 1147801 92 15853 1131893 1.38 1147746 93 14580 1120621 1.28 1135201 94 14848 1112628 1.32 1127476 95 15720 1100647 1.41 1116367 96 14543 1080286 1.33 1094829 97 14319 1054073 1.34 1068392 98 14566 979992 1.46 994558 99 9510 680077 1.38 689587 100 9796 609640 1.58 619436 101 14251 985639 1.43 999890 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 145020 207598 41.13 352618 2 130098 191132 40.50 321230 3 140037 211754 39.81 351791 4 133672 238984 35.87 372656 5 56634 298610 15.94 355244 6 32708 161091 16.88 193799 7 30293 173515 14.86 203808 8 32381 164658 16.43 197039 9 29022 145610 16.62 174632 10 31979 159273 16.72 191252 11 34148 155575 18.00 189723 12 33137 150997 18.00 184134 13 33945 147355 18.72 181300 14 35498 148839 19.26 184337 15 34502 137223 20.09 171725 16 33469 134453 19.93 167922 17 39795 145899 21.43 185694 18 38758 138507 21.86 177265 19 37081 134186 21.65 171267 20 35243 131669 21.11 166912 21 37078 130582 22.11 167660 22 36014 133309 21.27 169323 23 34102 128274 21.00 162376 24 33285 122382 21.38 155667 25 35987 130358 21.63 166345 26 33245 124456 21.08 157701 27 36062 124561 22.45 160623 28 33792 120670 21.88 154462 29 34530 125540 21.57 160070 30 33237 115927 22.28 149164 31 32092 119320 21.20 151412 32 31279 113214 21.65 144493 33 33524 113084 22.87 146608 34 33375 116445 22.28 149820 35 38883 122443 24.10 161326 36 33829 112255 23.16 146084 37 33932 116259 22.59 150191 38 30938 112186 21.62 143124 39 32458 109480 22.87 141938 40 33859 110837 23.40 144696 41 31339 106049 22.81 137388 42 31537 109584 22.35 141121 43 31719 108022 22.70 139741 44 29720 103659 22.28 133379 45 34496 109835 23.90 144331 46 29496 99019 22.95 128515 47 29735 100409 22.85 130144 48 29405 99048 22.89 128453 49 28273 101705 21.75 129978 50 27142 95383 22.15 122525 51 27563 94102 22.65 121665 52 28150 97185 22.46 125335 53 28122 93398 23.14 121520 54 27488 92785 22.85 120273 55 26970 91210 22.82 118180 56 26083 90324 22.41 116407 57 26292 87097 23.19 113389 58 26116 87827 22.92 113943 59 25180 84585 22.94 109765 60 25957 85687 23.25 111644 61 23010 83021 21.70 106031 62 23063 81699 22.01 104762 63 24370 80182 23.31 104552 64 23536 80969 22.52 104505 65 22986 76288 23.15 99274 66 23904 78855 23.26 102759 67 22445 77828 22.38 100273 68 23295 78773 22.82 102068 69 21817 76067 22.29 97884 70 21499 76149 22.02 97648 71 21965 71584 23.48 93549 72 21123 70376 23.09 91499 73 21107 72553 22.54 93660 74 19606 69131 22.09 88737 75 19775 68801 22.33 88576 76 19932 68176 22.62 88108 77 19473 67448 22.40 86921 78 19815 67648 22.66 87463 79 18694 66245 22.01 84939 80 18509 64399 22.32 82908 81 18231 64241 22.11 82472 82 18410 64147 22.30 82557 83 18410 61594 23.01 80004 84 19647 64580 23.33 84227 85 17781 62723 22.09 80504 86 17345 61350 22.04 78695 87 17189 60060 22.25 77249 88 17340 60265 22.34 77605 89 18342 59082 23.69 77424 90 17887 58866 23.30 76753 91 17224 57613 23.02 74837 92 16529 56743 22.56 73272 93 16590 57292 22.45 73882 94 16598 56877 22.59 73475 95 16698 55716 23.06 72414 96 16285 55471 22.69 71756 97 17300 56515 23.44 73815 98 15492 51742 23.04 67234 99 13663 0 100.00 13663 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51299 276414 15.65 327713 2 54109 283745 16.02 337854 3 51199 288112 15.09 339311 4 55314 302308 15.47 357622 5 4051 544773 0.74 548824 6 3148 651995 0.48 655143 7 2025 358489 0.56 360514 8 2056 385504 0.53 387560 9 1801 327675 0.55 329476 10 1796 315861 0.57 317657 11 2494 394224 0.63 396718 12 2058 331067 0.62 333125 13 1971 330164 0.59 332135 14 1921 323853 0.59 325774 15 1957 306838 0.63 308795 16 1803 288811 0.62 290614 17 2075 307417 0.67 309492 18 2078 277006 0.74 279084 19 1997 275822 0.72 277819 20 2012 270740 0.74 272752 21 2222 261715 0.84 263937 22 2046 281207 0.72 283253 23 1939 279175 0.69 281114 24 1814 255571 0.70 257385 25 1900 261363 0.72 263263 26 2009 269667 0.74 271676 27 1832 252692 0.72 254524 28 1802 242771 0.74 244573 29 1978 256400 0.77 258378 30 1985 250165 0.79 252150 31 1976 242806 0.81 244782 32 1892 247018 0.76 248910 33 2069 271300 0.76 273369 34 2014 241063 0.83 243077 35 2074 244278 0.84 246352 36 1980 241802 0.81 243782 37 1748 229261 0.76 231009 38 1881 235701 0.79 237582 39 1978 227441 0.86 229419 40 1889 220026 0.85 221915 41 2035 218759 0.92 220794 42 2022 206498 0.97 208520 43 2089 211514 0.98 213603 44 1835 214922 0.85 216757 45 1795 198836 0.89 200631 46 1827 200560 0.90 202387 47 1918 205667 0.92 207585 48 1863 197114 0.94 198977 49 1814 200486 0.90 202300 50 1971 196674 0.99 198645 51 1835 184815 0.98 186650 52 2109 184599 1.13 186708 53 2537 204126 1.23 206663 54 1846 186557 0.98 188403 55 1807 185764 0.96 187571 56 1834 186125 0.98 187959 57 1815 176958 1.02 178773 58 1610 175858 0.91 177468 59 1534 179854 0.85 181388 60 1347 171328 0.78 172675 61 1231 172694 0.71 173925 62 1229 175091 0.70 176320 63 1259 175910 0.71 177169 64 1146 163851 0.69 164997 65 1164 168676 0.69 169840 66 1172 157472 0.74 158644 67 1174 166337 0.70 167511 68 1075 163525 0.65 164600 69 1111 161567 0.68 162678 70 1099 159288 0.69 160387 71 1060 160674 0.66 161734 72 1095 151434 0.72 152529 73 1039 150685 0.68 151724 74 1039 155293 0.66 156332 75 1064 149212 0.71 150276 76 918 143860 0.63 144778 77 1067 150300 0.70 151367 78 1021 144003 0.70 145024 79 975 143778 0.67 144753 80 1015 139302 0.72 140317 81 925 134547 0.68 135472 82 911 133027 0.68 133938 83 1013 135552 0.74 136565 84 898 129512 0.69 130410 85 969 138734 0.69 139703 86 893 129573 0.68 130466 87 888 129205 0.68 130093 88 855 124649 0.68 125504 89 905 131439 0.68 132344 90 958 125641 0.76 126599 91 887 128018 0.69 128905 92 821 124172 0.66 124993 93 871 120210 0.72 121081 94 865 118526 0.72 119391 95 876 121246 0.72 122122 96 843 115841 0.72 116684 97 899 114640 0.78 115539 98 709 109588 0.64 110297 99 523 0 100.00 523 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 76445 391441 16.34 467886 2 63283 326742 16.23 390025 3 64120 336458 16.01 400578 4 64448 326386 16.49 390834 5 9058 613498 1.45 622556 6 9477 863104 1.09 872581 7 10500 1141809 0.91 1152309 8 9811 1134208 0.86 1144019 9 10647 1065967 0.99 1076614 10 10284 1090347 0.93 1100631 11 10136 1070913 0.94 1081049 12 10027 1000285 0.99 1010312 13 9810 1032439 0.94 1042249 14 9948 1039991 0.95 1049939 15 9577 1044211 0.91 1053788 16 9292 998376 0.92 1007668 17 9891 999459 0.98 1009350 18 9831 995897 0.98 1005728 19 8838 940670 0.93 949508 20 9898 977655 1.00 987553 21 9201 926838 0.98 936039 22 9608 911037 1.04 920645 23 9099 891453 1.01 900552 24 8650 860278 1.00 868928 25 9349 862511 1.07 871860 26 8826 855079 1.02 863905 27 9173 890683 1.02 899856 28 9029 865209 1.03 874238 29 8942 852387 1.04 861329 30 9111 830805 1.08 839916 31 8725 819261 1.05 827986 32 8327 803749 1.03 812076 33 8961 788533 1.12 797494 34 8554 782106 1.08 790660 35 9205 801635 1.14 810840 36 8424 794274 1.05 802698 37 8515 783189 1.08 791704 38 8976 808395 1.10 817371 39 8610 760423 1.12 769033 40 8527 777825 1.08 786352 41 8568 750069 1.13 758637 42 8573 754170 1.12 762743 43 8529 728498 1.16 737027 44 7914 728649 1.07 736563 45 8379 723807 1.14 732186 46 8148 732725 1.10 740873 47 7697 720861 1.06 728558 48 7893 706175 1.11 714068 49 7684 705815 1.08 713499 50 7579 699235 1.07 706814 51 7667 683592 1.11 691259 52 7180 654303 1.09 661483 53 7275 656500 1.10 663775 54 7119 640427 1.10 647546 55 6953 650600 1.06 657553 56 6884 638564 1.07 645448 57 6868 645550 1.05 652418 58 6540 631294 1.03 637834 59 6510 612117 1.05 618627 60 6449 624574 1.02 631023 61 6358 602654 1.04 609012 62 6085 599155 1.01 605240 63 5879 595804 0.98 601683 64 6092 580790 1.04 586882 65 5882 581283 1.00 587165 66 5777 568910 1.01 574687 67 5738 565979 1.00 571717 68 5774 577991 0.99 583765 69 5776 563198 1.02 568974 70 5648 551981 1.01 557629 71 5479 545839 0.99 551318 72 5618 540232 1.03 545850 73 5467 535479 1.01 540946 74 5229 535045 0.97 540274 75 5393 535067 1.00 540460 76 5126 517616 0.98 522742 77 5355 512160 1.03 517515 78 5382 513438 1.04 518820 79 5206 517989 1.00 523195 80 5213 500883 1.03 506096 81 5300 499091 1.05 504391 82 5230 494444 1.05 499674 83 4949 491583 1.00 496532 84 5285 487798 1.07 493083 85 4894 478416 1.01 483310 86 4753 477705 0.99 482458 87 5026 470849 1.06 475875 88 4719 460769 1.01 465488 89 4634 458153 1.00 462787 90 4618 457066 1.00 461684 91 4506 453547 0.98 458053 92 4471 449931 0.98 454402 93 4381 443306 0.98 447687 94 4334 434575 0.99 438909 95 4399 430948 1.01 435347 96 4274 423253 1.00 427527 97 4048 421348 0.95 425396 98 3518 398041 0.88 401559 99 2560 0 100.00 2560