Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-120_S32_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-120_S32_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 24140505
Paired-end alignments with a unique best hit 15369023
Pairs without alignments under any condition 4643634
Pairs that did not map uniquely 4127848
Genomic sequence context not extractable (edges of chromosomes) 53828

Cytosine Methylation

Total C's analysed 486319884
Methylated C's in CpG context 14621580
Methylated C's in CHG context 2256711
Methylated C's in CHH context 4783449
Methylated C's in Unknown context 139312
Unmethylated C's in CpG context 54571478
Unmethylated C's in CHG context 101857437
Unmethylated C's in CHH context 308229229
Unmethylated C's in Unknown context 2213712
Percentage methylation (CpG context) 21.1%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7610067 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7705128 original bottom strand