EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 14114527 lines in total Total number of methylation call strings processed: 28229054 Final Cytosine Methylation Report ================================= Total number of C's analysed: 339132197 Total methylated C's in CpG context: 10734677 Total methylated C's in CHG context: 1595800 Total methylated C's in CHH context: 3556551 Total C to T conversions in CpG context: 37931197 Total C to T conversions in CHG context: 69174107 Total C to T conversions in CHH context: 216139865 C methylated in CpG context: 22.1% C methylated in CHG context: 2.3% C methylated in CHH context: 1.6%