CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 225432 457052 33.03 682484 2 209527 492102 29.86 701629 3 193488 436562 30.71 630050 4 199878 339027 37.09 538905 5 190976 290781 39.64 481757 6 186686 246330 43.11 433016 7 204149 240296 45.93 444445 8 97057 282685 25.56 379742 9 88045 258277 25.42 346322 10 89739 247878 26.58 337617 11 93939 254088 26.99 348027 12 91199 258259 26.10 349458 13 88560 260636 25.36 349196 14 83053 260582 24.17 343635 15 79708 261382 23.37 341090 16 73772 257100 22.30 330872 17 68852 250860 21.54 319712 18 70771 255432 21.70 326203 19 70390 257396 21.47 327786 20 70222 261365 21.18 331587 21 71197 264567 21.20 335764 22 69147 261745 20.90 330892 23 68722 259108 20.96 327830 24 68054 257792 20.89 325846 25 65945 256686 20.44 322631 26 66403 252062 20.85 318465 27 66229 260682 20.26 326911 28 67712 258812 20.74 326524 29 66261 260172 20.30 326433 30 64664 258166 20.03 322830 31 66299 255667 20.59 321966 32 64884 250659 20.56 315543 33 65807 254268 20.56 320075 34 66917 253353 20.89 320270 35 65787 251316 20.75 317103 36 64631 254447 20.26 319078 37 63052 249079 20.20 312131 38 62854 250279 20.07 313133 39 64800 253138 20.38 317938 40 64542 249220 20.57 313762 41 64169 252176 20.28 316345 42 65474 256467 20.34 321941 43 65210 254722 20.38 319932 44 64669 251201 20.47 315870 45 64969 252707 20.45 317676 46 65687 255028 20.48 320715 47 64610 251019 20.47 315629 48 64615 251752 20.42 316367 49 66510 250379 20.99 316889 50 64177 253798 20.18 317975 51 64878 251607 20.50 316485 52 65401 258587 20.19 323988 53 63853 249367 20.39 313220 54 63199 248011 20.31 311210 55 62639 243773 20.44 306412 56 62610 241699 20.57 304309 57 63254 244274 20.57 307528 58 64481 244526 20.87 309007 59 64918 243281 21.06 308199 60 62842 245450 20.38 308292 61 64583 241893 21.07 306476 62 62761 246147 20.32 308908 63 62056 242689 20.36 304745 64 61614 242792 20.24 304406 65 62530 239830 20.68 302360 66 63346 240847 20.82 304193 67 62506 236436 20.91 298942 68 61404 236068 20.64 297472 69 60251 234044 20.47 294295 70 60081 233479 20.47 293560 71 59339 231803 20.38 291142 72 58855 231154 20.29 290009 73 58645 228471 20.43 287116 74 58825 226877 20.59 285702 75 56630 226444 20.01 283074 76 57014 225406 20.19 282420 77 57715 223785 20.50 281500 78 57530 224945 20.37 282475 79 56160 221579 20.22 277739 80 55511 220910 20.08 276421 81 54541 218612 19.97 273153 82 53629 218091 19.74 271720 83 54361 219097 19.88 273458 84 54217 219555 19.80 273772 85 53418 216268 19.81 269686 86 52962 214385 19.81 267347 87 51535 213719 19.43 265254 88 51971 212087 19.68 264058 89 50972 209473 19.57 260445 90 51147 210093 19.58 261240 91 50910 207151 19.73 258061 92 49663 205561 19.46 255224 93 49713 205775 19.46 255488 94 49862 205138 19.55 255000 95 48947 201821 19.52 250768 96 48886 203997 19.33 252883 97 48148 195585 19.75 243733 98 44627 184944 19.44 229571 99 35266 146895 19.36 182161 100 45715 186440 19.69 232155 101 41359 183286 18.41 224645 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 387756 458537 45.82 846293 2 229529 415168 35.60 644697 3 85950 409823 17.34 495773 4 38022 425249 8.21 463271 5 22484 393852 5.40 416336 6 18304 376200 4.64 394504 7 15190 484200 3.04 499390 8 6503 522543 1.23 529046 9 5578 485657 1.14 491235 10 5440 460156 1.17 465596 11 5694 462519 1.22 468213 12 5411 462065 1.16 467476 13 4926 444985 1.09 449911 14 4501 443407 1.00 447908 15 4274 454617 0.93 458891 16 3949 454234 0.86 458183 17 4154 449158 0.92 453312 18 4383 447301 0.97 451684 19 3505 448913 0.77 452418 20 3596 470858 0.76 474454 21 3645 477089 0.76 480734 22 3791 472337 0.80 476128 23 3905 477348 0.81 481253 24 3649 480288 0.75 483937 25 3478 466777 0.74 470255 26 4057 471456 0.85 475513 27 3666 477155 0.76 480821 28 3638 475725 0.76 479363 29 3994 479599 0.83 483593 30 3774 485217 0.77 488991 31 3602 474052 0.75 477654 32 3495 477646 0.73 481141 33 3557 480271 0.74 483828 34 3475 472878 0.73 476353 35 3795 476338 0.79 480133 36 3616 476509 0.75 480125 37 3588 466080 0.76 469668 38 3599 471802 0.76 475401 39 3626 469621 0.77 473247 40 3567 470405 0.75 473972 41 3535 469676 0.75 473211 42 3512 471856 0.74 475368 43 3480 465946 0.74 469426 44 3517 472993 0.74 476510 45 3670 471932 0.77 475602 46 3415 467552 0.73 470967 47 3602 469018 0.76 472620 48 3499 476194 0.73 479693 49 3562 466177 0.76 469739 50 3758 467233 0.80 470991 51 3618 471524 0.76 475142 52 3585 470493 0.76 474078 53 3712 469592 0.78 473304 54 3842 475155 0.80 478997 55 3842 468871 0.81 472713 56 3708 472132 0.78 475840 57 3890 472530 0.82 476420 58 4451 464774 0.95 469225 59 4158 469854 0.88 474012 60 4105 472770 0.86 476875 61 4205 467743 0.89 471948 62 4383 469925 0.92 474308 63 4340 465655 0.92 469995 64 4355 462098 0.93 466453 65 4692 461972 1.01 466664 66 4490 455956 0.98 460446 67 4402 448129 0.97 452531 68 4664 451611 1.02 456275 69 4457 452595 0.98 457052 70 4276 445822 0.95 450098 71 4331 444517 0.96 448848 72 4207 444044 0.94 448251 73 4570 439071 1.03 443641 74 4354 435155 0.99 439509 75 4437 439237 1.00 443674 76 4203 428568 0.97 432771 77 4350 431303 1.00 435653 78 4062 424413 0.95 428475 79 4153 418688 0.98 422841 80 4192 417116 0.99 421308 81 4184 415067 1.00 419251 82 4121 409312 1.00 413433 83 4236 415316 1.01 419552 84 4269 413891 1.02 418160 85 4235 408226 1.03 412461 86 4202 409040 1.02 413242 87 4297 408617 1.04 412914 88 4260 402090 1.05 406350 89 4324 400399 1.07 404723 90 4237 400256 1.05 404493 91 4328 394031 1.09 398359 92 4602 396182 1.15 400784 93 4565 394104 1.15 398669 94 4573 386522 1.17 391095 95 4597 387499 1.17 392096 96 4678 383212 1.21 387890 97 4508 350633 1.27 355141 98 4138 324733 1.26 328871 99 2673 212340 1.24 215013 100 3000 215045 1.38 218045 101 5815 345858 1.65 351673 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 372704 514201 42.02 886905 2 173381 559252 23.67 732633 3 76919 695775 9.95 772694 4 61804 754667 7.57 816471 5 53805 906708 5.60 960513 6 43290 994502 4.17 1037792 7 38060 1274957 2.90 1313017 8 22496 1375044 1.61 1397540 9 18097 1245451 1.43 1263548 10 17894 1209817 1.46 1227711 11 20150 1215796 1.63 1235946 12 18404 1237965 1.46 1256369 13 20248 1265688 1.57 1285936 14 20393 1301505 1.54 1321898 15 18777 1339440 1.38 1358217 16 18127 1373021 1.30 1391148 17 19396 1388304 1.38 1407700 18 17928 1440251 1.23 1458179 19 18038 1475753 1.21 1493791 20 19790 1523480 1.28 1543270 21 17806 1526889 1.15 1544695 22 18921 1533910 1.22 1552831 23 20251 1536017 1.30 1556268 24 17856 1538588 1.15 1556444 25 18519 1545860 1.18 1564379 26 20026 1561839 1.27 1581865 27 18339 1569313 1.16 1587652 28 18276 1572522 1.15 1590798 29 20061 1567447 1.26 1587508 30 17981 1552952 1.14 1570933 31 17909 1532907 1.15 1550816 32 18733 1542033 1.20 1560766 33 17753 1540592 1.14 1558345 34 19088 1552634 1.21 1571722 35 19575 1541171 1.25 1560746 36 17838 1552387 1.14 1570225 37 17655 1546612 1.13 1564267 38 19903 1551424 1.27 1571327 39 17761 1542554 1.14 1560315 40 18155 1544122 1.16 1562277 41 19913 1550546 1.27 1570459 42 18425 1559398 1.17 1577823 43 19077 1540991 1.22 1560068 44 19343 1551742 1.23 1571085 45 18488 1543742 1.18 1562230 46 18214 1548786 1.16 1567000 47 18959 1544991 1.21 1563950 48 17459 1547115 1.12 1564574 49 17672 1531548 1.14 1549220 50 18963 1529811 1.22 1548774 51 17375 1521259 1.13 1538634 52 18193 1514867 1.19 1533060 53 18950 1508731 1.24 1527681 54 17524 1512991 1.14 1530515 55 18067 1507143 1.18 1525210 56 18980 1506885 1.24 1525865 57 17577 1524866 1.14 1542443 58 19693 1511937 1.29 1531630 59 19592 1524077 1.27 1543669 60 17569 1507173 1.15 1524742 61 18461 1498311 1.22 1516772 62 19069 1490374 1.26 1509443 63 17470 1479187 1.17 1496657 64 18886 1473036 1.27 1491922 65 18745 1471612 1.26 1490357 66 17633 1465899 1.19 1483532 67 17786 1457539 1.21 1475325 68 18637 1453020 1.27 1471657 69 17163 1448979 1.17 1466142 70 17486 1439595 1.20 1457081 71 18447 1436818 1.27 1455265 72 17373 1436064 1.20 1453437 73 18168 1420410 1.26 1438578 74 18463 1418439 1.28 1436902 75 17252 1407695 1.21 1424947 76 17206 1405758 1.21 1422964 77 18319 1394497 1.30 1412816 78 16249 1387249 1.16 1403498 79 16800 1382228 1.20 1399028 80 17786 1375039 1.28 1392825 81 16426 1358494 1.19 1374920 82 17229 1350268 1.26 1367497 83 17723 1353165 1.29 1370888 84 16863 1337527 1.25 1354390 85 16156 1324560 1.21 1340716 86 17119 1313902 1.29 1331021 87 15735 1308559 1.19 1324294 88 15769 1302342 1.20 1318111 89 17288 1292044 1.32 1309332 90 15733 1289418 1.21 1305151 91 16000 1277939 1.24 1293939 92 16674 1277028 1.29 1293702 93 15595 1264655 1.22 1280250 94 15891 1256936 1.25 1272827 95 16891 1244651 1.34 1261542 96 15499 1220714 1.25 1236213 97 15330 1190721 1.27 1206051 98 15565 1109252 1.38 1124817 99 9802 772638 1.25 782440 100 10421 691589 1.48 702010 101 15078 1120276 1.33 1135354 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 160513 258411 38.32 418924 2 143930 237009 37.78 380939 3 154697 263848 36.96 418545 4 151629 301467 33.47 453096 5 61914 378612 14.05 440526 6 35836 204267 14.93 240103 7 32278 215142 13.05 247420 8 34455 204988 14.39 239443 9 30824 180867 14.56 211691 10 34405 199030 14.74 233435 11 36447 192965 15.89 229412 12 35869 187410 16.06 223279 13 36161 184345 16.40 220506 14 38482 187689 17.01 226171 15 37581 171691 17.96 209272 16 36145 167986 17.71 204131 17 42440 181067 18.99 223507 18 41637 174489 19.27 216126 19 40017 169540 19.10 209557 20 38007 165096 18.71 203103 21 39754 163975 19.51 203729 22 38774 167164 18.83 205938 23 36298 160174 18.47 196472 24 35838 155122 18.77 190960 25 39255 161315 19.57 200570 26 35921 155777 18.74 191698 27 38519 155331 19.87 193850 28 36237 151094 19.34 187331 29 37146 156768 19.16 193914 30 36558 147349 19.88 183907 31 34547 150084 18.71 184631 32 33628 142953 19.04 176581 33 36677 144374 20.26 181051 34 35566 147760 19.40 183326 35 41402 156891 20.88 198293 36 36299 143829 20.15 180128 37 36670 145848 20.09 182518 38 33877 141301 19.34 175178 39 35213 138276 20.30 173489 40 36688 140071 20.76 176759 41 33719 135900 19.88 169619 42 33915 138983 19.62 172898 43 34161 137553 19.89 171714 44 31974 132833 19.40 164807 45 37154 140135 20.96 177289 46 31904 126054 20.20 157958 47 32188 128124 20.08 160312 48 32227 126219 20.34 158446 49 30814 128764 19.31 159578 50 29670 121964 19.57 151634 51 29678 119756 19.86 149434 52 30228 123035 19.72 153263 53 30453 119154 20.36 149607 54 29510 119753 19.77 149263 55 29795 117314 20.25 147109 56 27948 115580 19.47 143528 57 28913 114827 20.11 143740 58 28257 114451 19.80 142708 59 27280 107692 20.21 134972 60 28128 109233 20.48 137361 61 25449 107045 19.21 132494 62 25509 105249 19.51 130758 63 26939 103850 20.60 130789 64 25492 103391 19.78 128883 65 25080 97251 20.50 122331 66 25985 100599 20.53 126584 67 24797 101935 19.57 126732 68 25544 104071 19.71 129615 69 24045 98285 19.66 122330 70 23449 97388 19.41 120837 71 24192 92033 20.81 116225 72 23109 90752 20.30 113861 73 22955 93099 19.78 116054 74 21474 89549 19.34 111023 75 21956 89660 19.67 111616 76 21878 87016 20.09 108894 77 21668 88020 19.75 109688 78 21523 88137 19.63 109660 79 20801 85368 19.59 106169 80 20440 83062 19.75 103502 81 20178 83213 19.52 103391 82 20258 82536 19.71 102794 83 20293 79583 20.32 99876 84 21437 85333 20.08 106770 85 19800 80945 19.65 100745 86 19158 80082 19.30 99240 87 19018 77694 19.66 96712 88 19135 77775 19.75 96910 89 19723 77488 20.29 97211 90 19427 77612 20.02 97039 91 18773 75005 20.02 93778 92 18040 74329 19.53 92369 93 18361 74008 19.88 92369 94 18583 72996 20.29 91579 95 18431 71978 20.39 90409 96 18205 72598 20.05 90803 97 18908 74089 20.33 92997 98 17047 66770 20.34 83817 99 14847 0 100.00 14847 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 57690 310755 15.66 368445 2 61275 323564 15.92 384839 3 57973 330360 14.93 388333 4 64315 346497 15.66 410812 5 4632 629631 0.73 634263 6 3591 749052 0.48 752643 7 2342 411908 0.57 414250 8 2380 439491 0.54 441871 9 2084 375757 0.55 377841 10 2073 360149 0.57 362222 11 2775 449563 0.61 452338 12 2310 378140 0.61 380450 13 2278 375499 0.60 377777 14 2285 370287 0.61 372572 15 2304 353308 0.65 355612 16 2057 332171 0.62 334228 17 2345 352271 0.66 354616 18 2341 317425 0.73 319766 19 2168 313497 0.69 315665 20 2122 311963 0.68 314085 21 2446 300596 0.81 303042 22 2318 321985 0.71 324303 23 2227 317989 0.70 320216 24 2175 293414 0.74 295589 25 2170 299540 0.72 301710 26 2318 311022 0.74 313340 27 2108 290012 0.72 292120 28 2045 279938 0.73 281983 29 2257 296930 0.75 299187 30 2183 288050 0.75 290233 31 2159 278137 0.77 280296 32 2146 284679 0.75 286825 33 2424 315968 0.76 318392 34 2128 278248 0.76 280376 35 2292 282690 0.80 284982 36 2215 280505 0.78 282720 37 2037 265227 0.76 267264 38 2160 272419 0.79 274579 39 2147 262333 0.81 264480 40 2139 255896 0.83 258035 41 2195 253817 0.86 256012 42 2216 240376 0.91 242592 43 2245 246379 0.90 248624 44 2084 248757 0.83 250841 45 2014 230714 0.87 232728 46 1951 233171 0.83 235122 47 2110 238250 0.88 240360 48 2034 230872 0.87 232906 49 2082 236731 0.87 238813 50 2204 231602 0.94 233806 51 2014 216646 0.92 218660 52 2114 215217 0.97 217331 53 2544 237811 1.06 240355 54 2094 216910 0.96 219004 55 2062 216355 0.94 218417 56 1943 215991 0.89 217934 57 2085 206890 1.00 208975 58 1888 207190 0.90 209078 59 1770 209139 0.84 210909 60 1592 201024 0.79 202616 61 1401 200693 0.69 202094 62 1469 205896 0.71 207365 63 1443 206916 0.69 208359 64 1274 191132 0.66 192406 65 1404 197680 0.71 199084 66 1253 182978 0.68 184231 67 1408 194463 0.72 195871 68 1293 192086 0.67 193379 69 1267 189316 0.66 190583 70 1229 187441 0.65 188670 71 1312 190153 0.69 191465 72 1228 177984 0.69 179212 73 1163 176666 0.65 177829 74 1246 182062 0.68 183308 75 1197 175077 0.68 176274 76 1045 168306 0.62 169351 77 1192 175495 0.67 176687 78 1162 169647 0.68 170809 79 1166 169284 0.68 170450 80 1106 164257 0.67 165363 81 1129 157442 0.71 158571 82 1120 157019 0.71 158139 83 1123 159835 0.70 160958 84 1059 153368 0.69 154427 85 1147 165004 0.69 166151 86 1131 154350 0.73 155481 87 1122 153592 0.73 154714 88 1069 147361 0.72 148430 89 1158 155401 0.74 156559 90 1084 150245 0.72 151329 91 1044 152215 0.68 153259 92 1035 148222 0.69 149257 93 1023 143012 0.71 144035 94 1008 140987 0.71 141995 95 1024 143147 0.71 144171 96 1044 137068 0.76 138112 97 991 136174 0.72 137165 98 823 131127 0.62 131950 99 641 0 100.00 641 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 85706 436175 16.42 521881 2 70966 365115 16.27 436081 3 71539 376723 15.96 448262 4 71817 367389 16.35 439206 5 9774 694589 1.39 704363 6 10332 968718 1.06 979050 7 11544 1290557 0.89 1302101 8 10972 1282377 0.85 1293349 9 11718 1205440 0.96 1217158 10 11089 1235724 0.89 1246813 11 11336 1212038 0.93 1223374 12 11135 1134109 0.97 1145244 13 10632 1167495 0.90 1178127 14 11246 1180204 0.94 1191450 15 10833 1186252 0.90 1197085 16 10045 1134198 0.88 1144243 17 11132 1138689 0.97 1149821 18 10860 1135239 0.95 1146099 19 9838 1072882 0.91 1082720 20 11017 1115489 0.98 1126506 21 10344 1059957 0.97 1070301 22 10592 1037592 1.01 1048184 23 10012 1017557 0.97 1027569 24 9690 983877 0.98 993567 25 10334 985075 1.04 995409 26 9783 978270 0.99 988053 27 10581 1023695 1.02 1034276 28 9737 994930 0.97 1004667 29 9835 976825 1.00 986660 30 10224 954609 1.06 964833 31 9544 937600 1.01 947144 32 9277 919297 1.00 928574 33 9905 903111 1.08 913016 34 9191 898383 1.01 907574 35 9872 922245 1.06 932117 36 9535 914373 1.03 923908 37 9089 900628 1.00 909717 38 9835 926514 1.05 936349 39 9698 872885 1.10 882583 40 9223 899037 1.02 908260 41 9435 865417 1.08 874852 42 9515 873042 1.08 882557 43 9372 840760 1.10 850132 44 8683 840144 1.02 848827 45 9301 838052 1.10 847353 46 8934 843947 1.05 852881 47 8527 828665 1.02 837192 48 8972 813297 1.09 822269 49 8572 815051 1.04 823623 50 8548 809507 1.04 818055 51 8755 792186 1.09 800941 52 7969 757760 1.04 765729 53 8145 760152 1.06 768297 54 7867 742979 1.05 750846 55 7845 755468 1.03 763313 56 7681 740531 1.03 748212 57 7646 750333 1.01 757979 58 7293 732940 0.99 740233 59 7381 711043 1.03 718424 60 7190 725007 0.98 732197 61 7061 697421 1.00 704482 62 6842 692449 0.98 699291 63 6669 688729 0.96 695398 64 6572 675301 0.96 681873 65 6369 677508 0.93 683877 66 6599 661966 0.99 668565 67 6345 657788 0.96 664133 68 6508 673621 0.96 680129 69 6655 657035 1.00 663690 70 6234 642963 0.96 649197 71 6107 634964 0.95 641071 72 6390 628826 1.01 635216 73 6112 623380 0.97 629492 74 5919 621219 0.94 627138 75 6006 620507 0.96 626513 76 5589 601663 0.92 607252 77 5963 597267 0.99 603230 78 5936 597748 0.98 603684 79 5890 604295 0.97 610185 80 5772 587253 0.97 593025 81 6008 583073 1.02 589081 82 5822 576913 1.00 582735 83 5405 573986 0.93 579391 84 5787 570115 1.00 575902 85 5364 559963 0.95 565327 86 5440 558145 0.97 563585 87 5432 550282 0.98 555714 88 5211 538829 0.96 544040 89 5177 534939 0.96 540116 90 5185 533931 0.96 539116 91 4968 530486 0.93 535454 92 4941 523366 0.94 528307 93 4957 519001 0.95 523958 94 4771 510702 0.93 515473 95 4879 503805 0.96 508684 96 4678 498135 0.93 502813 97 4400 492186 0.89 496586 98 3984 467586 0.84 471570 99 2815 0 100.00 2815