Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-119_S31_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-119_S31_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 28905983
Paired-end alignments with a unique best hit 17855290
Pairs without alignments under any condition 6103503
Pairs that did not map uniquely 4947190
Genomic sequence context not extractable (edges of chromosomes) 54114

Cytosine Methylation

Total C's analysed 584935129
Methylated C's in CpG context 15464480
Methylated C's in CHG context 2577134
Methylated C's in CHH context 5369999
Methylated C's in Unknown context 154349
Unmethylated C's in CpG context 78865615
Unmethylated C's in CHG context 122139280
Unmethylated C's in CHH context 360518621
Unmethylated C's in Unknown context 2531231
Percentage methylation (CpG context) 16.4%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 1.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8752859 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 9048317 original bottom strand