CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 260948 431345 37.69 692293 2 237495 454246 34.33 691741 3 207369 399026 34.20 606395 4 200912 301796 39.97 502708 5 189712 250171 43.13 439883 6 187649 216112 46.48 403761 7 206406 208186 49.79 414592 8 97638 240093 28.91 337731 9 87635 218105 28.66 305740 10 88333 208467 29.76 296800 11 91002 212536 29.98 303538 12 87287 218760 28.52 306047 13 86273 223833 27.82 310106 14 80386 221897 26.59 302283 15 77196 223988 25.63 301184 16 71601 220015 24.55 291616 17 67471 213433 24.02 280904 18 69779 216636 24.36 286415 19 69099 219689 23.93 288788 20 69968 222587 23.92 292555 21 70641 225429 23.86 296070 22 68762 222362 23.62 291124 23 68085 219292 23.69 287377 24 67111 219589 23.41 286700 25 65224 218369 23.00 283593 26 66043 214169 23.57 280212 27 65242 220231 22.85 285473 28 68184 219047 23.74 287231 29 65924 225330 22.63 291254 30 64868 221229 22.67 286097 31 65548 217526 23.16 283074 32 64091 213278 23.11 277369 33 64760 215642 23.10 280402 34 65099 214338 23.30 279437 35 64342 212906 23.21 277248 36 63996 216144 22.84 280140 37 62508 213173 22.67 275681 38 62169 214160 22.50 276329 39 63952 214200 22.99 278152 40 65144 213084 23.41 278228 41 64863 213987 23.26 278850 42 65190 216366 23.15 281556 43 64440 215074 23.05 279514 44 64027 212945 23.12 276972 45 64959 212914 23.38 277873 46 65292 214900 23.30 280192 47 65364 211982 23.57 277346 48 65055 212845 23.41 277900 49 66243 211785 23.83 278028 50 63354 214531 22.80 277885 51 64485 214725 23.10 279210 52 64163 221981 22.42 286144 53 62917 212572 22.84 275489 54 61840 211403 22.63 273243 55 61359 207278 22.84 268637 56 61346 204261 23.10 265607 57 62004 206616 23.08 268620 58 63144 206969 23.38 270113 59 63733 206663 23.57 270396 60 61961 208241 22.93 270202 61 63071 205762 23.46 268833 62 61916 208875 22.86 270791 63 60821 206455 22.76 267276 64 60632 206596 22.69 267228 65 61080 202213 23.20 263293 66 61908 203381 23.34 265289 67 60921 200488 23.30 261409 68 60121 199309 23.17 259430 69 58672 197730 22.88 256402 70 58997 196904 23.05 255901 71 57957 195541 22.86 253498 72 58397 194529 23.09 252926 73 57169 192396 22.91 249565 74 56951 191730 22.90 248681 75 54871 189986 22.41 244857 76 55521 189187 22.69 244708 77 55799 187716 22.91 243515 78 55107 188453 22.63 243560 79 54851 186142 22.76 240993 80 53498 185732 22.36 239230 81 53179 183851 22.44 237030 82 51658 182184 22.09 233842 83 52894 183163 22.41 236057 84 52836 184132 22.30 236968 85 52524 180957 22.50 233481 86 51194 178269 22.31 229463 87 50559 177740 22.15 228299 88 50589 177670 22.16 228259 89 49536 174232 22.14 223768 90 49998 174211 22.30 224209 91 49179 172982 22.14 222161 92 48282 170738 22.04 219020 93 48035 170958 21.93 218993 94 48263 168664 22.25 216927 95 47684 168179 22.09 215863 96 47945 170629 21.94 218574 97 45846 163730 21.88 209576 98 42809 154356 21.71 197165 99 33811 121898 21.71 155709 100 44572 154284 22.41 198856 101 40523 151401 21.11 191924 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 373229 430761 46.42 803990 2 224530 386058 36.77 610588 3 91104 378635 19.39 469739 4 40444 392688 9.34 433132 5 23603 366397 6.05 390000 6 18977 360710 5.00 379687 7 14044 449234 3.03 463278 8 6022 485062 1.23 491084 9 4947 447176 1.09 452123 10 4849 426437 1.12 431286 11 5084 427907 1.17 432991 12 4867 433471 1.11 438338 13 4275 412861 1.02 417136 14 3963 412756 0.95 416719 15 3857 421184 0.91 425041 16 3683 422061 0.87 425744 17 3704 417226 0.88 420930 18 3879 417930 0.92 421809 19 3271 417216 0.78 420487 20 3326 438392 0.75 441718 21 3406 446115 0.76 449521 22 3421 438556 0.77 441977 23 3544 443632 0.79 447176 24 3215 448570 0.71 451785 25 3349 433893 0.77 437242 26 3658 438709 0.83 442367 27 3284 443912 0.73 447196 28 3206 442765 0.72 445971 29 3602 445970 0.80 449572 30 3382 450766 0.74 454148 31 3191 442407 0.72 445598 32 3234 443950 0.72 447184 33 3221 444829 0.72 448050 34 3217 435778 0.73 438995 35 3454 442818 0.77 446272 36 3350 445816 0.75 449166 37 3157 432972 0.72 436129 38 3354 439086 0.76 442440 39 3317 437314 0.75 440631 40 3319 435315 0.76 438634 41 3365 435297 0.77 438662 42 3189 438725 0.72 441914 43 3141 433292 0.72 436433 44 3190 441151 0.72 444341 45 3295 437828 0.75 441123 46 3233 434659 0.74 437892 47 3386 434581 0.77 437967 48 3149 442936 0.71 446085 49 3235 432908 0.74 436143 50 3497 435508 0.80 439005 51 3395 439746 0.77 443141 52 3462 437615 0.78 441077 53 3352 436288 0.76 439640 54 3491 442527 0.78 446018 55 3376 433900 0.77 437276 56 3437 438506 0.78 441943 57 3548 439922 0.80 443470 58 4217 434264 0.96 438481 59 3837 437412 0.87 441249 60 3931 442103 0.88 446034 61 3979 436508 0.90 440487 62 4168 439100 0.94 443268 63 4047 434383 0.92 438430 64 4120 433754 0.94 437874 65 4458 430033 1.03 434491 66 4125 425216 0.96 429341 67 4086 415240 0.97 419326 68 4400 419322 1.04 423722 69 4148 418754 0.98 422902 70 4154 412614 1.00 416768 71 4078 412100 0.98 416178 72 4054 411357 0.98 415411 73 4136 403693 1.01 407829 74 4200 402970 1.03 407170 75 4101 405016 1.00 409117 76 3961 394802 0.99 398763 77 4053 397149 1.01 401202 78 3827 394267 0.96 398094 79 3969 386397 1.02 390366 80 3889 385018 1.00 388907 81 3959 383227 1.02 387186 82 3818 377591 1.00 381409 83 3979 383421 1.03 387400 84 3879 382996 1.00 386875 85 4029 374235 1.07 378264 86 4132 379099 1.08 383231 87 3968 377198 1.04 381166 88 4030 368320 1.08 372350 89 4157 366797 1.12 370954 90 4087 369043 1.10 373130 91 4237 361592 1.16 365829 92 4193 362349 1.14 366542 93 4459 360347 1.22 364806 94 4419 354171 1.23 358590 95 4283 354314 1.19 358597 96 4603 350507 1.30 355110 97 4324 320125 1.33 324449 98 3905 295231 1.31 299136 99 2570 189476 1.34 192046 100 2825 192990 1.44 195815 101 5474 314360 1.71 319834 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 328162 487438 40.24 815600 2 154302 510395 23.21 664697 3 70454 648379 9.80 718833 4 55591 713951 7.22 769542 5 48529 849652 5.40 898181 6 38598 942123 3.94 980721 7 34414 1191497 2.81 1225911 8 20864 1280847 1.60 1301711 9 16619 1169850 1.40 1186469 10 16350 1146653 1.41 1163003 11 18747 1148891 1.61 1167638 12 16845 1173607 1.42 1190452 13 17844 1198976 1.47 1216820 14 18566 1233411 1.48 1251977 15 16707 1266514 1.30 1283221 16 16209 1296285 1.23 1312494 17 17692 1303861 1.34 1321553 18 15923 1355071 1.16 1370994 19 16256 1384594 1.16 1400850 20 17978 1429230 1.24 1447208 21 16090 1434018 1.11 1450108 22 17083 1435923 1.18 1453006 23 18561 1438326 1.27 1456887 24 16112 1437943 1.11 1454055 25 17017 1449039 1.16 1466056 26 18088 1463903 1.22 1481991 27 16313 1469328 1.10 1485641 28 16433 1469764 1.11 1486197 29 18303 1466699 1.23 1485002 30 16268 1451993 1.11 1468261 31 16284 1432149 1.12 1448433 32 17352 1442842 1.19 1460194 33 15904 1440136 1.09 1456040 34 17386 1449891 1.18 1467277 35 18153 1441035 1.24 1459188 36 16115 1450748 1.10 1466863 37 16240 1444946 1.11 1461186 38 18184 1450863 1.24 1469047 39 16045 1444766 1.10 1460811 40 16487 1445876 1.13 1462363 41 18231 1453726 1.24 1471957 42 16789 1463940 1.13 1480729 43 17186 1446869 1.17 1464055 44 17862 1455593 1.21 1473455 45 16698 1446087 1.14 1462785 46 16562 1448555 1.13 1465117 47 17513 1446356 1.20 1463869 48 15770 1450263 1.08 1466033 49 16337 1430948 1.13 1447285 50 17418 1426417 1.21 1443835 51 15717 1414891 1.10 1430608 52 16558 1414050 1.16 1430608 53 17556 1406873 1.23 1424429 54 15874 1411223 1.11 1427097 55 16250 1412857 1.14 1429107 56 17375 1408560 1.22 1425935 57 16061 1425379 1.11 1441440 58 17733 1412040 1.24 1429773 59 17982 1426226 1.25 1444208 60 16012 1405526 1.13 1421538 61 16905 1400352 1.19 1417257 62 17574 1389356 1.25 1406930 63 15994 1377379 1.15 1393373 64 16853 1369151 1.22 1386004 65 17138 1371222 1.23 1388360 66 16246 1362069 1.18 1378315 67 16174 1353202 1.18 1369376 68 17157 1348246 1.26 1365403 69 15709 1341408 1.16 1357117 70 15958 1338375 1.18 1354333 71 17237 1334200 1.28 1351437 72 15660 1327774 1.17 1343434 73 16714 1312614 1.26 1329328 74 17158 1311198 1.29 1328356 75 15657 1303720 1.19 1319377 76 15701 1295566 1.20 1311267 77 16877 1288348 1.29 1305225 78 15025 1279173 1.16 1294198 79 15448 1270500 1.20 1285948 80 16514 1265555 1.29 1282069 81 15167 1251049 1.20 1266216 82 15547 1240537 1.24 1256084 83 16404 1241682 1.30 1258086 84 14796 1228550 1.19 1243346 85 14946 1216294 1.21 1231240 86 15706 1208622 1.28 1224328 87 14427 1202836 1.19 1217263 88 14552 1197744 1.20 1212296 89 15812 1187254 1.31 1203066 90 14284 1183106 1.19 1197390 91 14839 1168287 1.25 1183126 92 15482 1167699 1.31 1183181 93 14286 1156327 1.22 1170613 94 14603 1149030 1.25 1163633 95 15483 1135954 1.34 1151437 96 14088 1114148 1.25 1128236 97 14117 1086669 1.28 1100786 98 14343 1010057 1.40 1024400 99 9277 701537 1.31 710814 100 9892 628645 1.55 638537 101 14076 1015871 1.37 1029947 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 148884 212748 41.17 361632 2 133272 194941 40.61 328213 3 143078 217401 39.69 360479 4 135590 244635 35.66 380225 5 57960 304758 15.98 362718 6 33214 164538 16.80 197752 7 30760 178330 14.71 209090 8 32947 167946 16.40 200893 9 29806 149127 16.66 178933 10 32975 163719 16.76 196694 11 34694 159240 17.89 193934 12 34003 154266 18.06 188269 13 35116 150839 18.88 185955 14 35387 152818 18.80 188205 15 34623 139925 19.84 174548 16 34481 137276 20.08 171757 17 40553 149692 21.32 190245 18 39407 140958 21.85 180365 19 36696 136585 21.18 173281 20 35434 133501 20.97 168935 21 37078 133091 21.79 170169 22 36377 135393 21.18 171770 23 34519 130175 20.96 164694 24 33379 125782 20.97 159161 25 36047 132106 21.44 168153 26 34328 127462 21.22 161790 27 36739 127071 22.43 163810 28 34823 124059 21.92 158882 29 35409 128859 21.56 164268 30 33757 119106 22.08 152863 31 32312 121651 20.99 153963 32 31796 115623 21.57 147419 33 33498 116151 22.38 149649 34 33488 118611 22.02 152099 35 39606 124283 24.17 163889 36 34285 114868 22.99 149153 37 34616 118129 22.66 152745 38 31674 113993 21.74 145667 39 32743 111314 22.73 144057 40 34169 112692 23.27 146861 41 31326 108934 22.33 140260 42 31411 111031 22.05 142442 43 31927 109930 22.51 141857 44 29846 106599 21.87 136445 45 35213 111065 24.07 146278 46 29191 101065 22.41 130256 47 29739 101675 22.63 131414 48 28960 100483 22.37 129443 49 28563 103035 21.70 131598 50 27395 97022 22.02 124417 51 27853 95084 22.66 122937 52 28184 97955 22.34 126139 53 28113 93634 23.09 121747 54 27175 94348 22.36 121523 55 27084 92097 22.73 119181 56 25804 91154 22.06 116958 57 26314 88149 22.99 114463 58 25861 88786 22.56 114647 59 25095 85042 22.79 110137 60 25662 85720 23.04 111382 61 22960 83937 21.48 106897 62 23109 83124 21.75 106233 63 24311 81252 23.03 105563 64 23654 82226 22.34 105880 65 22909 76538 23.04 99447 66 23804 79375 23.07 103179 67 22243 78642 22.05 100885 68 23627 79115 23.00 102742 69 21811 76626 22.16 98437 70 21776 76142 22.24 97918 71 22234 71124 23.82 93358 72 21443 70966 23.20 92409 73 21237 72353 22.69 93590 74 19545 69585 21.93 89130 75 19891 69686 22.21 89577 76 19940 68373 22.58 88313 77 19430 68155 22.18 87585 78 19794 67751 22.61 87545 79 19033 66525 22.25 85558 80 18222 64137 22.13 82359 81 18249 64282 22.11 82531 82 18244 64385 22.08 82629 83 18345 61933 22.85 80278 84 19287 65320 22.80 84607 85 17739 62521 22.10 80260 86 17476 61692 22.07 79168 87 17049 60071 22.11 77120 88 16967 59891 22.08 76858 89 17590 59218 22.90 76808 90 17499 58055 23.16 75554 91 17245 57916 22.94 75161 92 16127 56589 22.18 72716 93 15920 57411 21.71 73331 94 16322 56174 22.51 72496 95 16438 55770 22.76 72208 96 15786 55141 22.26 70927 97 16282 55718 22.61 72000 98 15166 50734 23.01 65900 99 13362 0 100.00 13362 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54126 285090 15.96 339216 2 56582 291078 16.28 347660 3 53139 298554 15.11 351693 4 57662 308434 15.75 366096 5 4194 561576 0.74 565770 6 3049 670426 0.45 673475 7 2067 369000 0.56 371067 8 2061 396658 0.52 398719 9 1792 338260 0.53 340052 10 1898 326919 0.58 328817 11 2422 406725 0.59 409147 12 1973 339264 0.58 341237 13 1987 338984 0.58 340971 14 1989 334250 0.59 336239 15 1935 316928 0.61 318863 16 1754 296126 0.59 297880 17 2079 317944 0.65 320023 18 2138 283847 0.75 285985 19 1919 284043 0.67 285962 20 1961 280109 0.70 282070 21 2150 268932 0.79 271082 22 2082 288307 0.72 290389 23 1947 288662 0.67 290609 24 1824 262013 0.69 263837 25 1982 270044 0.73 272026 26 2024 277534 0.72 279558 27 1945 260395 0.74 262340 28 1883 248911 0.75 250794 29 2059 262858 0.78 264917 30 2123 257452 0.82 259575 31 1975 248327 0.79 250302 32 1949 255459 0.76 257408 33 2069 277987 0.74 280056 34 1954 246647 0.79 248601 35 2082 251110 0.82 253192 36 1993 247121 0.80 249114 37 1833 235143 0.77 236976 38 1867 241428 0.77 243295 39 1830 232528 0.78 234358 40 1933 225432 0.85 227365 41 2027 223442 0.90 225469 42 2129 210989 1.00 213118 43 2123 216500 0.97 218623 44 1942 219632 0.88 221574 45 1894 202636 0.93 204530 46 1857 204319 0.90 206176 47 1939 209811 0.92 211750 48 1929 200899 0.95 202828 49 2000 204219 0.97 206219 50 2056 201228 1.01 203284 51 1960 189001 1.03 190961 52 2047 188419 1.07 190466 53 2545 208856 1.20 211401 54 1893 190367 0.98 192260 55 1846 188460 0.97 190306 56 1781 189933 0.93 191714 57 1792 181291 0.98 183083 58 1530 179104 0.85 180634 59 1502 184897 0.81 186399 60 1346 172352 0.77 173698 61 1194 174648 0.68 175842 62 1270 177274 0.71 178544 63 1228 178197 0.68 179425 64 1123 165809 0.67 166932 65 1126 172919 0.65 174045 66 1036 159000 0.65 160036 67 1133 168857 0.67 169990 68 1115 165646 0.67 166761 69 1117 163466 0.68 164583 70 1115 161596 0.69 162711 71 1118 163669 0.68 164787 72 1058 153115 0.69 154173 73 1045 152436 0.68 153481 74 1053 158188 0.66 159241 75 995 151507 0.65 152502 76 971 145345 0.66 146316 77 1060 152560 0.69 153620 78 984 145430 0.67 146414 79 998 145498 0.68 146496 80 951 141189 0.67 142140 81 908 135733 0.66 136641 82 914 135108 0.67 136022 83 988 136884 0.72 137872 84 886 130441 0.67 131327 85 905 138708 0.65 139613 86 949 131296 0.72 132245 87 908 129917 0.69 130825 88 837 124454 0.67 125291 89 932 131853 0.70 132785 90 972 126556 0.76 127528 91 910 128437 0.70 129347 92 849 125144 0.67 125993 93 925 120724 0.76 121649 94 786 118647 0.66 119433 95 918 121290 0.75 122208 96 864 115986 0.74 116850 97 855 114349 0.74 115204 98 681 110460 0.61 111141 99 538 0 100.00 538 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 78268 400294 16.35 478562 2 64701 337366 16.09 402067 3 65528 345012 15.96 410540 4 66167 336931 16.41 403098 5 9080 635650 1.41 644730 6 9259 892265 1.03 901524 7 10344 1178903 0.87 1189247 8 9830 1171388 0.83 1181218 9 10431 1102088 0.94 1112519 10 10065 1129363 0.88 1139428 11 9991 1107475 0.89 1117466 12 9755 1033810 0.93 1043565 13 9572 1064786 0.89 1074358 14 9894 1073272 0.91 1083166 15 9635 1077881 0.89 1087516 16 9032 1030203 0.87 1039235 17 9695 1032785 0.93 1042480 18 9634 1025902 0.93 1035536 19 8705 967720 0.89 976425 20 9662 1004755 0.95 1014417 21 8979 951223 0.94 960202 22 9284 937225 0.98 946509 23 8997 916773 0.97 925770 24 8457 883940 0.95 892397 25 9129 885796 1.02 894925 26 8525 878544 0.96 887069 27 9384 915351 1.01 924735 28 8696 886189 0.97 894885 29 8574 875352 0.97 883926 30 8759 849645 1.02 858404 31 8781 838136 1.04 846917 32 8152 821486 0.98 829638 33 8921 807979 1.09 816900 34 8256 801461 1.02 809717 35 8831 819612 1.07 828443 36 8233 812193 1.00 820426 37 8212 803116 1.01 811328 38 8680 825628 1.04 834308 39 8295 777138 1.06 785433 40 8288 793801 1.03 802089 41 8273 765761 1.07 774034 42 8393 768606 1.08 776999 43 8219 740609 1.10 748828 44 7784 743160 1.04 750944 45 8194 738983 1.10 747177 46 7871 742443 1.05 750314 47 7522 733303 1.02 740825 48 7699 719504 1.06 727203 49 7610 718310 1.05 725920 50 7332 710658 1.02 717990 51 7553 695311 1.07 702864 52 7162 664751 1.07 671913 53 7190 665081 1.07 672271 54 7051 650567 1.07 657618 55 6689 660197 1.00 666886 56 6932 649811 1.06 656743 57 6806 654327 1.03 661133 58 6415 640804 0.99 647219 59 6349 619730 1.01 626079 60 6248 633086 0.98 639334 61 6117 609953 0.99 616070 62 6012 606441 0.98 612453 63 5702 600168 0.94 605870 64 5846 586699 0.99 592545 65 5633 587353 0.95 592986 66 5782 571481 1.00 577263 67 5529 569191 0.96 574720 68 5523 584105 0.94 589628 69 5588 567330 0.98 572918 70 5367 556221 0.96 561588 71 5250 549771 0.95 555021 72 5526 543294 1.01 548820 73 5396 536611 1.00 542007 74 5024 536170 0.93 541194 75 5273 535955 0.97 541228 76 4890 521368 0.93 526258 77 5222 514953 1.00 520175 78 5117 515583 0.98 520700 79 5048 520562 0.96 525610 80 4904 503904 0.96 508808 81 5080 499738 1.01 504818 82 5019 496318 1.00 501337 83 4770 492071 0.96 496841 84 4960 488572 1.01 493532 85 4820 478229 1.00 483049 86 4552 477098 0.95 481650 87 4627 470543 0.97 475170 88 4505 461153 0.97 465658 89 4451 458660 0.96 463111 90 4662 457437 1.01 462099 91 4388 454574 0.96 458962 92 4231 450186 0.93 454417 93 4332 443615 0.97 447947 94 4229 431916 0.97 436145 95 4278 429471 0.99 433749 96 3983 421912 0.94 425895 97 3969 419679 0.94 423648 98 3425 396721 0.86 400146 99 2387 0 100.00 2387