Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-113_S30_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-113_S30_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 26302191
Paired-end alignments with a unique best hit 16483292
Pairs without alignments under any condition 5220361
Pairs that did not map uniquely 4598538
Genomic sequence context not extractable (edges of chromosomes) 58233

Cytosine Methylation

Total C's analysed 526188769
Methylated C's in CpG context 15267809
Methylated C's in CHG context 2440214
Methylated C's in CHH context 4843988
Methylated C's in Unknown context 146901
Unmethylated C's in CpG context 62712360
Unmethylated C's in CHG context 110290531
Unmethylated C's in CHH context 330633867
Unmethylated C's in Unknown context 2346374
Percentage methylation (CpG context) 19.6%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.4%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8104046 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8321013 original bottom strand